Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g00464 ATGTTGAATTTCAAGGAAATGCCTCCGTCCGCTTCTTCCCTGTTCGCGGCGTATGCCTCCTTCGCCACTTCCATGATGATGATCCGTTCCATAACCAACGACCTTCTTCCTCCCCAACTCATCTCCTTCATCTCCTCCATTTTCACCTACTTTTTCCCCCCGAAATCCTCCCCTCAGACCACCCTTGTCATCGAGAAAAAGACGAACTACAACAAAAACCAGGTATTCGAAGCTGCCGAGATCTACCTTCGTACCAAAATCAGCCCCTCAATGGACCGTCTCAAGGTCTCCAAAACTCCCAGGCAGCAGAGAGTTTCCCTCTCCATGGAAAAGGATCAAGAAATTGTAGATCAATTCGAAGACATTCATCTCAAATGGCGCTTCGTCGCCGAGAAAAAGAAGGAAGGTAATGAGTTTGTCAAGGAGAAACGCCATTACGAGCTTGTTTTCGATAAGAAATTCATGGATAAAGTAGTGGATTTCTATTTGCCTTACATCTTACGAAGAGCCAAGGAGATTACAGAAATGGAGAATGTTTCCAAACTCTGTAGTCAAAATTTATCGTACAGTGACGATTTTGGTGATGAGAGATGTCGAGGGAATTGGGGATCCATCGGTCTGGAGCATCCGGCGACGTTCGATACTCTGGCGATGGATCCTGATTTGAAGAAGATGATAATCGATGATTTGGATCGATTCTTGAAGCGGAAGGAATTTTATCGCAAGGTTGGAAAGGCTTGGAAGAGAGGCTACTTGTTGTACGGTCCACCTGGTACGGGGAAATCGAGCTTAATCGCCGCCATGGCTAATTACCTCAAGTTTGATATCTACGATTTAGATCTCACAGATATCTGCAGCAATAGCGAGCTGAGAAGATCGTTACTCTCCACTTCAAATCGCTCGATTTTGGTGATTGAGGATATCGATTGCAGCGTTAATTTGCAGAATCGGGCCAATAGCGACGACGAAAGCGAAAATAACGACGATTACAGAAGCAAGTTGACGCTGTCTGGTATGCTTAATTTTATGGATGGATTGTGGTCGAGCTGCGGCGATGAGAGGATCATCGTTCTCACGACGAATCACAAGGACCGATTAGATCCAGCGCTGTTGCGACCTGGTCGAATGGACGTCCATATCCACTTGAGCTACTGCTCCTCAAAGGCGTTCGAGGCTTTAACCACCAATTACCTCGGCGGCGGAGCTATTCATCACCCGCTGTACGAAGAAATCGAAGCGCTGGTCGAGCACGCCAATGTGACTCCGGCGGAGGTTGCGGAAGAACTGATGAAGGACGACGACATTGACATCGTGATGGAAGGTTTAGCCAAGTTTGTGAAGCGAAAGAGAGAGGAACAGAATGATGGAAATAACGCGGCGGAGGAAGAAGGGTCTGATCTTGAGAGCTCTGAGGATGAGAGGAATACATCCATTGGGTCCTTCAAGCAGAAGGCAGCCCTTGCCTCCTCCATGTTCAGGCATTCTATGACACGAAGGGGTAGGAGAAGTAGTAGAGTCACATCTATGAGAATTGAAGATGTGCATGACACAGAGGAGCTGCGGGCTGTCGATTCCTTTCGCCAAGCATTGATTTTGGAGGAGTTACTACCTTGCAAGCATGATGACTATCACATGATGCTCAGATTCTTGAAGGCCAGGAAGTTTGATATTGAGAAAACAAAGCAAATGTGGACTGACATGCTCCAATGGCGTAAAGAATTTGGTGCTGACACCATAATGGAGGATTTTGTATTCGAGGAGCTTGATCAAGTCTTAGATTATTATCCTCAAGGGAATCATGGTGTAGATAAGGAAGGAAGGCCAGTATATATTGAGAAATTGGGCATGGTGGATCCCACCAAGTTGATGCAAGTCACTGATATTGAACGCTATCTGAAATACCATGTACGAGAGTTTGAGAGGACATTCGCGGTAAAGTTTCCTGCCTGTTCAATAGCTTCCAAGAGGCACATTGATCAAAGTACAACAATCTTGGACGTTCAGGGAGTGGGACTTAAAAGCTTCAATAAGATTGCTCGGGAACTCATCTCCCGCCTTCAGAAAATTGATGGCGAGAACTATCCGGAGACCTTAAATCGTATGTTCATCATTAATGCTGGTTCCGGATTTAGAATGCTGTGGAACACTGTAAAATCTTTTCTAGATCCTAAAACCACTGCAAAGATCCATGTTCTTGGAAATAAATACCAAAGCAAGTTGCTGGAAATTATTGATTCCAGGTATGTTACTGAAGAGACAGTAAACTTTCACGTATCGTATAAATTTGGAAATGTTCATGCAAAGTTTTGCCCTCCTGTTGTGGTGTCATGTTGCACCAGTGAATTGCCAGAGTTTCTTGGAGGCACCTGTACCTGTGCTGATCAAGGAGGGTGCATGCGTTCTGATAAAGGTCCATGGAAGGACCCAAATATATTGAAGATGGTCAGCAATGGAACCCATAAATGTTCAGTGATATCTAGGGACAACGAGGAAGCATTTCCTGATTTTAAGGATGTTTGCTCCATCTCCTCCAAACATCCTTTTAATCACGTTCAGCGTCCACTCCTGTCTCCTCTCCATGAGGTTTCAATTACCAAGAATATTCGTGTGGCATACAACGAGGATTGTGTCCCCGTGGTTGATAAAACTGTGGATTTTGCATGGAAAAATGTGTCAAAAAAGAGCATGCCAGCCTCATCCAACGCAATGGATTTTGATATGGCTGGTTCAGGCGAGGTCCCTGGGGGTCTTAAATCAAAGATTTTGGCTAGTGTTTTGGCCTTCATCGTGGGAATTTCTGCTACGGTGAGGTTGGCTCGCACCATGCCTAACAAACTGACCAATGCCTCCATATACTCCGAACCATTTTACTATGTCGACGACTCTAACATGCTCAAGGGTCAGCCACCTTTATTTGAACCCTTGCCTGATTACATGTCAACCGTAAAACGCATGGCTAAATTGGAAGAGAGAGTCAATAACTTGTGCTCTAAACCTGCTGACCTGCCTCGCGAGAAAGAGGAACTACTCAATGCTGTAACAAGCCGTGTTGAAGCCCTCGAACAGGATCTTCTCGTAACCAAAAAGGTTCTGGAGGAAACACTAGCTAGACAAGAAGAGATTTTTGCTTATATTGAGAAGAGGAAGAAAAAGAAGAAACTGTTATCGTTCCCCTGGTGA 3180 45.09 MLNFKEMPPSASSLFAAYASFATSMMMIRSITNDLLPPQLISFISSIFTYFFPPKSSPQTTLVIEKKTNYNKNQVFEAAEIYLRTKISPSMDRLKVSKTPRQQRVSLSMEKDQEIVDQFEDIHLKWRFVAEKKKEGNEFVKEKRHYELVFDKKFMDKVVDFYLPYILRRAKEITEMENVSKLCSQNLSYSDDFGDERCRGNWGSIGLEHPATFDTLAMDPDLKKMIIDDLDRFLKRKEFYRKVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDLDLTDICSNSELRRSLLSTSNRSILVIEDIDCSVNLQNRANSDDESENNDDYRSKLTLSGMLNFMDGLWSSCGDERIIVLTTNHKDRLDPALLRPGRMDVHIHLSYCSSKAFEALTTNYLGGGAIHHPLYEEIEALVEHANVTPAEVAEELMKDDDIDIVMEGLAKFVKRKREEQNDGNNAAEEEGSDLESSEDERNTSIGSFKQKAALASSMFRHSMTRRGRRSSRVTSMRIEDVHDTEELRAVDSFRQALILEELLPCKHDDYHMMLRFLKARKFDIEKTKQMWTDMLQWRKEFGADTIMEDFVFEELDQVLDYYPQGNHGVDKEGRPVYIEKLGMVDPTKLMQVTDIERYLKYHVREFERTFAVKFPACSIASKRHIDQSTTILDVQGVGLKSFNKIARELISRLQKIDGENYPETLNRMFIINAGSGFRMLWNTVKSFLDPKTTAKIHVLGNKYQSKLLEIIDSRYVTEETVNFHVSYKFGNVHAKFCPPVVVSCCTSELPEFLGGTCTCADQGGCMRSDKGPWKDPNILKMVSNGTHKCSVISRDNEEAFPDFKDVCSISSKHPFNHVQRPLLSPLHEVSITKNIRVAYNEDCVPVVDKTVDFAWKNVSKKSMPASSNAMDFDMAGSGEVPGGLKSKILASVLAFIVGISATVRLARTMPNKLTNASIYSEPFYYVDDSNMLKGQPPLFEPLPDYMSTVKRMAKLEERVNNLCSKPADLPREKEELLNAVTSRVEALEQDLLVTKKVLEETLARQEEIFAYIEKRKKKKKLLSFPW 1059
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2122300 2130300 - CmoCh07G004640.1 Cmo07g00464 385772

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g00464 1059 Pfam ATPase family associated with various cellular activities (AAA) 252 383 IPR003959 GO:0005524|GO:0016887
Cmo07g00464 1059 Gene3D - 381 452 - -
Cmo07g00464 1059 PANTHER PHOSPHATIDYLINOSITOL/PHOSPHATIDYLCHOLINE TRANSFER PROTEIN SFH10-RELATED 466 749 - -
Cmo07g00464 1059 Coils Coil 443 463 - -
Cmo07g00464 1059 Pfam Domain associated at C-terminal with AAA 36 129 IPR025753 -
Cmo07g00464 1059 SMART AAA_5 247 386 IPR003593 -
Cmo07g00464 1059 Gene3D - 205 380 IPR027417 -
Cmo07g00464 1059 PANTHER PHOSPHATIDYLINOSITOL/PHOSPHATIDYLCHOLINE TRANSFER PROTEIN SFH10-RELATED 779 1054 - -
Cmo07g00464 1059 Gene3D - 575 820 IPR036865 -
Cmo07g00464 1059 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 587 794 IPR001251 -
Cmo07g00464 1059 SUPERFAMILY CRAL/TRIO N-terminal domain 516 583 IPR036273 -
Cmo07g00464 1059 SUPERFAMILY CRAL/TRIO domain 586 749 IPR036865 -
Cmo07g00464 1059 SMART sec14_4 587 758 IPR001251 -
Cmo07g00464 1059 CDD AAA 248 384 - -
Cmo07g00464 1059 ProSitePatterns AAA-protein family signature. 354 372 IPR003960 GO:0005524|GO:0016887
Cmo07g00464 1059 CDD SEC14 590 752 IPR001251 -
Cmo07g00464 1059 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 154 431 IPR027417 -
Cmo07g00464 1059 Pfam CRAL/TRIO domain 594 751 IPR001251 -
Cmo07g00464 1059 Pfam CRAL/TRIO, N-terminal domain 540 566 IPR011074 -
Cmo07g00464 1059 SMART CRAL_TRIO_N_2 542 567 IPR011074 -
Cmo07g00464 1059 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 466 749 - -
Cmo07g00464 1059 Gene3D - 502 574 - -
Cmo07g00464 1059 MobiDBLite consensus disorder prediction 449 476 - -
Cmo07g00464 1059 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 779 1054 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g00464 - - - csv:101208423 888.256
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo03g00748 Cmo07g00464 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00820 Cmo-Chr4:4078956 Cmo07g00464 Cmo-Chr7:2122300 3.76E-156 dispersed
Cmo07g00464 Cmo-Chr7:2122300 Cmo20g00843 Cmo-Chr20:4240374 0 dispersed
Cmo07g00467 Cmo-Chr7:2139821 Cmo07g00464 Cmo-Chr7:2122300 5.99E-84 dispersed
Cmo07g00464 Cmo-Chr7:2122300 Cmo07g00465 Cmo-Chr7:2131899 0 tandem
Cmo04g01919 Cmo-Chr4:9791425 Cmo07g00464 Cmo-Chr7:2122300 9.53E-114 transposed
Cmo03g00748 Cmo-Chr3:6314670 Cmo07g00464 Cmo-Chr7:2122300 0 wgd
Cmo07g00464 Cmo-Chr7:2122300 Cmo09g00136 Cmo-Chr9:627349 1.08E-68 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1029 . . . . . . . . . . Cma03g00721 Cma07g00466 Car03g00661 Car07g00413 . Cpe19g00824 Cpe10g00635 Bhi03g00922 . . . . . . Cla01g01939 Cam01g2027 Cec04g1687 Cco04g1751 Clacu01g2050 Cmu01g1926 Cre04g1600 . . . . Lsi01g00646 . . Cme08g00885 . . . . . . . . Sed01g0289 Cmo03g00748 Cmo07g00464 . Cma20g00834 . . . . Bhi10g01982 Tan05g1281 Cmetu11g0971 . Hepe08g1000 . . . . . . . . . . Csa06g03279 Chy02g00615 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009311 0 2 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 0 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo07g00464 Cmo_Chr07 FPKM 7.02193 5.708621 6.035633 6.206101 12.113489 11.793062 12.247544 7.206874 6.793751 6.240383