Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g00478 ATGATTGAATCCATGGGGAAGAAAAACAGAGTTCATGTGTTCCGGGAAGGTGGAGATCGGAGAAGAAGGCTACTGTGCAAGGTGAATATGGAAAACAGTGCTGGAGAAGGAAATTCCGCAAATGCAGGAGTCCCTAGGATTACGCTCAATGAAAGAATTCTTTCTTCCATGTCTAGAAGATCTGTGGCTGCTCACCCTTGGCATGATTTGGAGATCGGACCTGGTGCGCCGTCGGTTTTCAATTGTGTTATAGAAATTAGCAAAGGCAGCAAGGTCAAATATGAGCTTGACAAGGCCAGTGGCCTTATAAAAGTCGACCGTGTACTTTACTCATCAGTTGTTTACCCACACAACTATGGTTTCATCCCGCGTACAATCTGTGAAGACAGTGATCCTATGGATGTTCTTGTACTGATGCAGGAGCCTGTGCTCCCTGGATCTTTCCTCCGAGCTCGTGCTATTGGATTGATGCCCATGATTGATCAAGGAGAAAGGGATGACAAAATCATAGCAGTATGTGCTGACGACCCAGAATTTCGCCATTACAAGGACATCAAGGAGATTCCCCCGCACCGGTTGGCTGAAATTCGCCGATTCTTCGAAGACTACAAGAAGAACGAGAACAAGAAAGTGGACGTTGAAGACTTCCTGCCAGCTGAAGCTGCCAGTGATGCCGTCAAGTACTCCATGTAA 693 46.61 MIESMGKKNRVHVFREGGDRRRRLLCKVNMENSAGEGNSANAGVPRITLNERILSSMSRRSVAAHPWHDLEIGPGAPSVFNCVIEISKGSKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQEPVLPGSFLRARAIGLMPMIDQGERDDKIIAVCADDPEFRHYKDIKEIPPHRLAEIRRFFEDYKKNENKKVDVEDFLPAEAASDAVKYSM 230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2180102 2183070 - CmoCh07G004780.1 Cmo07g00478 385786

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g00478 230 PANTHER INORGANIC PYROPHOSPHATASE 45 230 IPR008162 GO:0000287|GO:0004427|GO:0005737|GO:0006796
Cmo07g00478 230 Pfam Inorganic pyrophosphatase 82 228 IPR008162 GO:0000287|GO:0004427|GO:0005737|GO:0006796
Cmo07g00478 230 CDD pyrophosphatase 79 230 IPR008162 GO:0000287|GO:0004427|GO:0005737|GO:0006796
Cmo07g00478 230 ProSitePatterns Inorganic pyrophosphatase signature. 129 135 - -
Cmo07g00478 230 SUPERFAMILY Inorganic pyrophosphatase 59 229 IPR036649 GO:0000287|GO:0004427|GO:0005737|GO:0006796
Cmo07g00478 230 Hamap Inorganic pyrophosphatase [ppa]. 78 229 IPR008162 GO:0000287|GO:0004427|GO:0005737|GO:0006796
Cmo07g00478 230 Gene3D Inorganic pyrophosphatase 61 230 IPR036649 GO:0000287|GO:0004427|GO:0005737|GO:0006796
Cmo07g00478 230 PANTHER BNAC07G03580D PROTEIN 45 230 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g00478 K01507 ppa; inorganic pyrophosphatase [EC:3.6.1.1] - csv:101222890 418.313
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo03g00767 Cmo07g00478 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g00478 Cmo-Chr7:2180102 Cmo07g01018 Cmo-Chr7:5040466 7.96E-119 dispersed
Cmo17g00533 Cmo-Chr17:5248652 Cmo07g00478 Cmo-Chr7:2180102 2.56E-32 transposed
Cmo03g00767 Cmo-Chr3:6383818 Cmo07g00478 Cmo-Chr7:2180102 1.08E-138 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g997 . Blo16g00052 . . . Bpe13g00439 . . . . Cma03g00738 Cma07g00478 Car03g00674 Car07g00421 Sed14g1131 Cpe19g00816 Cpe10g00622 Bhi03g01322 Tan03g1998 Cmetu08g1280 . . . . . . . . . . . Cone8ag0818 Cone12ag0770 . . Lsi01g00667 . . Cme08g00859 . . Bda11g01859 . . . . Bma06g00117 . Cmo03g00767 Cmo07g00478 . . . . . . . . . . . . . . . . . . . . . Csa06g03255 Chy02g00634 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000387 7 6 4 6 6 3 5 2 3 3 2 3 6 3 2 5 3 4 6 2 3 4 2 2 3 2 3 12 11 3 126
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo07g00478 Cmo_Chr07 FPKM 13.174169 12.940794 28.57011 30.530411 16.750605 17.046513 18.068678 16.724367 16.919647 17.839262