Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g00479 ATGTGTCCAGCTCTGAATCTAATGAAGCAGAGGAAGGATGGATATGAACCGTCTGATACGGAGACAGAATGGCAAGAGAGCCCTTGGAATGACCCTAAGGCGAAGAAACTTGTACTGGATTACAATAACCGACGAGCAGATTCGGCAGCATCGAAGAAGTTCAGTACTGCAGCGAATATTTCTCCTCCTGGTTCGAGAAGAAACAATGGCAAAACACCTCACAGGCCGGCCAAAGACGACAGTGTTCTAGTCATGCATCAGAGAAACATCAGCCCCTTGTCGAGAGCAGAAAGAAGAAGACACAAATCACCTTTTAAAGCTGGAGCAGAGGAAATTGGAAGCTCTAGCATGAGGTCAAGAAAAGAGGAGAAGTTGACTTATTCTCATGGGAGTAACAGAATAAGTCAAAAGCCAAACCACAATAGAAGATCAGTGACTGCTCCAAGGTTGAGAACAAGAGATGAACATATGAGTGCTGTTAACGATTTATCTCAAAGGAGAGACAGAGCTGCTCCATCCTTGCAGGTCAACTCCATCCTGCACCAGTCAAAGGAGGTTTCTCAAGTGAACTCTCTTTCTGTTGGTGAAATGAACGAGATGATTGCAGATGGAAGGGTCCATAGAGGTTCGATTTTTAATGAACCGATGGTTGAAAGCACGGGGTCAATCTCACCGGGGGACATATTCTTTTCGCGTGATGGCATGGCTATTGGAATGAATAACAATGCCACAGGAAAGAGAAATGCATTCAAGAATTATATAAGTCCAAGGCCTAACTTTGTGTCCAAAAAGAATGATGATACTTATAATCAAGTTGAAGTAAATGCTAATGGTAGAGGGGTTACTTCTGCTGGAACAGGTTTGTCAACGACCACAACCAATAGTGCTGCTGTAAGTAGAGAAAATAGTAGTAGAATTAGCACTGAAAGTAGTAAGATCAGTGATGTGAGTGGAAGAACAAGTGAAAGTACAAGAAGGTTTATAGCCAGTAGACGAAAGAAGAAGAACGAGATGTGGTTTTCTTGTATGAGGAATGGGCCCTGCAGGACGACGAAATCGCCCGAAAAGCGGGAGTTCGATGAAGCTACATTCATTGAAAGAGCAAATGTTGTTGAATACTTGAAACCCTTTTGGGCAGATAAGCATCGACCGGTGTCCTTAAGTGGATTCGCTTTCCATAAGCCTGAGGCGCAAACTCTCAAGCAATTAGTTTTACAAGACAGTTTTCCCCACATCCTGTTCAAGGGTCCGCGCGGATCTGGCAAACGAGTGCTCATTATGGCTCTTTTGCGTGAGATATATGGCGATTCATGTTGGAATGTTTCTCATGATTTGCGACGTTTCCAGATTCAGGAAAGAAAACTAACGCAAGTCTTTGTTCCATTGACGTCAAGTGCTCACCATGTGGAACTAAATTTAAGCTCAGAAGCAAATGCTAAGTATGCTCTACTGGGATTGGCTAAAGAAATAGGAAGTGAATATTCCATTAACGTGGAAGCAAGAAATCTCAATCCGAAGGCTAGTTTCAAAGTGGTAATCCTTTTAGATGTAGACAAAGCTGTAGAGGATATTCAACATTTGCTTAGGTGGATTATGGATGGCTATAAGGATGCCTGCAAAGTAGTACTCTGTTGTGACAACGACACAGGCATCCTTGACTCAGTGATAAGCCGCTGCAAAGTTATCAAAATTAACCCTCCAGTAACTCATGAAATCATAGATGTACTTATCCAAATAGCAAAGAAGGAGGAATTTGACGTGCCTATGAACTTCGCTTCTAAGATTGCTACTAAAGCAAAGCAGAACCTGAGAAAAGCAATCATGGCGCTTGAAGCATGCAAGGCACACAATTATCCATTTTCTGATGACCAGCCAATCCCCATTGGATGGGAAGAGGCCGTGGTAGAACTCGCAGCTCATATCCTCGAAGACCCGACGAATCCAAGATTACACCTAGTAAAAGAAAAAATTCAGAAGCTTCTAGTTGAGTCAGTTCATCCAAAACTAATCCTCCAGAAGCTCGTGGAAGAATTTCTGAAAAGAATTGAGCTGAGGTCAAGGAGGGAACTTTATTACTGGCATGCTTATTATAACAAGAGGCTCCCAACTGAAACTGGAACGGGCGCCTTACCCAAATTGGAAGAATTCGTGGCGAAGTTCATGAGCATTGGCTTCTCCATCCCGAAATTCTCTCTTCCTCGTCTTTTCTCACCCGCTGAGCTCGGAATAGAATCTGTTGCCATATATTTGCTCGAGTCGCTTTTGTGTGTCCGATTCACGCTTAATCTCGACGCTGCTACTCTTCTGCTACTGAGTGAGTGA 2322 43.24 MCPALNLMKQRKDGYEPSDTETEWQESPWNDPKAKKLVLDYNNRRADSAASKKFSTAANISPPGSRRNNGKTPHRPAKDDSVLVMHQRNISPLSRAERRRHKSPFKAGAEEIGSSSMRSRKEEKLTYSHGSNRISQKPNHNRRSVTAPRLRTRDEHMSAVNDLSQRRDRAAPSLQVNSILHQSKEVSQVNSLSVGEMNEMIADGRVHRGSIFNEPMVESTGSISPGDIFFSRDGMAIGMNNNATGKRNAFKNYISPRPNFVSKKNDDTYNQVEVNANGRGVTSAGTGLSTTTTNSAAVSRENSSRISTESSKISDVSGRTSESTRRFIASRRKKKNEMWFSCMRNGPCRTTKSPEKREFDEATFIERANVVEYLKPFWADKHRPVSLSGFAFHKPEAQTLKQLVLQDSFPHILFKGPRGSGKRVLIMALLREIYGDSCWNVSHDLRRFQIQERKLTQVFVPLTSSAHHVELNLSSEANAKYALLGLAKEIGSEYSINVEARNLNPKASFKVVILLDVDKAVEDIQHLLRWIMDGYKDACKVVLCCDNDTGILDSVISRCKVIKINPPVTHEIIDVLIQIAKKEEFDVPMNFASKIATKAKQNLRKAIMALEACKAHNYPFSDDQPIPIGWEEAVVELAAHILEDPTNPRLHLVKEKIQKLLVESVHPKLILQKLVEEFLKRIELRSRRELYYWHAYYNKRLPTETGTGALPKLEEFVAKFMSIGFSIPKFSLPRLFSPAELGIESVAIYLLESLLCVRFTLNLDAATLLLLSE 773
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2183312 2188247 - CmoCh07G004790.1 Cmo07g00479 385787

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g00479 773 MobiDBLite consensus disorder prediction 278 319 - -
Cmo07g00479 773 MobiDBLite consensus disorder prediction 1 33 - -
Cmo07g00479 773 SUPERFAMILY post-AAA+ oligomerization domain-like 629 723 IPR008921 GO:0003677|GO:0006260
Cmo07g00479 773 PANTHER OS02G0704966 PROTEIN 184 723 - -
Cmo07g00479 773 CDD AAA 396 562 - -
Cmo07g00479 773 Gene3D - 569 626 - -
Cmo07g00479 773 MobiDBLite consensus disorder prediction 92 107 - -
Cmo07g00479 773 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 377 620 IPR027417 -
Cmo07g00479 773 Gene3D - 629 724 - -
Cmo07g00479 773 MobiDBLite consensus disorder prediction 46 149 - -
Cmo07g00479 773 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 184 723 - -
Cmo07g00479 773 Gene3D - 376 567 IPR027417 -
Cmo07g00479 773 MobiDBLite consensus disorder prediction 48 68 - -
Cmo07g00479 773 MobiDBLite consensus disorder prediction 129 145 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g00479 K10756 RFC3_5; replication factor C subunit 3/5 - csv:101218071 1256.51
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00225 Cmo-Chr3:3512963 Cmo07g00479 Cmo-Chr7:2183312 8.43E-74 dispersed
Cmo06g01192 Cmo-Chr6:9081038 Cmo07g00479 Cmo-Chr7:2183312 2.81E-09 dispersed
Cmo07g00479 Cmo-Chr7:2183312 Cmo16g01059 Cmo-Chr16:7436229 7.93E-10 dispersed
Cmo07g00479 Cmo-Chr7:2183312 Cmo15g00675 Cmo-Chr15:3298109 2.27E-15 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g994 . . . Bda10g00139 . . . . . . . Cma07g00480 . Car07g00423 . Cpe19g00815 . Bhi03g01318 Tan03g1994 . . Hepe04g1525 . . Cla01g01919 Cam01g2005 Cec04g1663 Cco04g1725 Clacu01g2026 Cmu01g1901 Cre04g1577 . . Cone6ag1636 Cone9ag1557 . . . Cme08g00857 . Blo06g00136 . . Bpe10g00121 . . . . . Cmo07g00479 . . . . . . . . . . . . . . . . . . . . . Csa06g03254 Chy02g00635 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006466 1 3 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 4 4 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo07g00479 Cmo_Chr07 FPKM 3.278788 4.235635 3.716479 0.0 1.365245 0.0 0.0 4.617128 3.840387 3.974264