Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g00480 ATGGCTTTGAAGCCGAACGAAGCTCTGTTTCTTGATGGTGGAATCGCCGTATTCAAGTTTACGCATTGCTTAAATCGTCCATTCGATTCGAGGAGTAGCGTTGAGTTTCGAATCAAAGGGTTGCTATGCCACACAATTATGTCCTTCAAAAGCTTTTTTCGCGAGCTATGGGAAATCAAAGACGGTCTTTCGATGAAACCGAAGCGAGGGGGAGAAGGAAGGAACTGGCGAAGTCGAACCAGGTCACATATTGCACCTGATGAAGTGCCTCCTCAGCCAGAAGCAGTTCAGCAAGGCCAGTGGGCAAATTTGCCTCCTGAGTTGCTTTTGGACATAATCCGAAGAGTAGAAGAGAGTGAAACCTCGTGGCCTGCTAGGACTGCTGTCCTGTTTTGTGCTTCAGTGTGCAAGTCATGGAGAAACATTACGAAGGAAGTTGTCAAAACTCCTGAGCAGTGTGGGAGGCTCACGTTTCCCATTTCACTGAAACAGGTAAAGGGCTTACTTTCATTGATCTCCTTTGATAAGTTTATGCTTCAACTTACACTTGCCATTGTTTCTCTTGCGAAGCCGGGACCTCGAGACTCCCCAATTCAATGCTATGTTAGAAGGCACCGAGCAACTTCGACCTATCGTCTATACTCCGGATTGGTGCCTTCGGAGAATGAAAGTGATAAACTGTTATTAGCAGCTAAGAGAGTAAGAAGGGCTACAGGTACAGATTTTGTTATATCACTGGTTGCTGATGATTTTTCCTGGATCCGCAGTACCTATGTAGGCAAATTAAGGCAAGCGTCCAACTTCTTTGGCACAAAGTTCACCATGTATGATACTCAACAGAATAATCAATCAATCCGTTCAATTCATGCTAATAAGCAAGTCTCTCCAAGAATGTCAGCTTGTAACTACACTATAGGGGCAATCTCTTATGAGCTTAATGTTCTACGCACTAGAGGGCCCAGAAGAATGCACTGTGCCATACACTCAATCCCTGTATCTTGCATTCAACAGGGAGGAAATGCACCGACACCGACATCATTCACGGCCTGTGTCGATAACCAATGCTCTCCTCTACCAGCTTCTAAAGGAAAGGAGCCAGAGACAGATGCAAGTTCCACATGCATCCAAGGTGCACAGATTCAAGATTTGGGAGAATCCTTGGTTCTTAAGAACAAGGCTCCTAGATGGCACGAACAGCTTCGATGCTGGTGCTTGAACTTCAGAGGACGTGTGACAGTGGCTTCTGTAAAAAACTTTCAACTCGTGGTCGATGTAGATCCCGCCCTCAACGTGTCGGTTGAAGAACAAGAGAAGATAATATTGCAGTTTGGGAAAATTGGAAAGGACATCTTCACAATGGATTATCGCTACCCGCTCTCCGCCTTCCAAGCTTTCGCAATCTGCTTGAGTAGCTTCGACACCAAACCAGCATGTGAATAA 1440 45.56 MALKPNEALFLDGGIAVFKFTHCLNRPFDSRSSVEFRIKGLLCHTIMSFKSFFRELWEIKDGLSMKPKRGGEGRNWRSRTRSHIAPDEVPPQPEAVQQGQWANLPPELLLDIIRRVEESETSWPARTAVLFCASVCKSWRNITKEVVKTPEQCGRLTFPISLKQVKGLLSLISFDKFMLQLTLAIVSLAKPGPRDSPIQCYVRRHRATSTYRLYSGLVPSENESDKLLLAAKRVRRATGTDFVISLVADDFSWIRSTYVGKLRQASNFFGTKFTMYDTQQNNQSIRSIHANKQVSPRMSACNYTIGAISYELNVLRTRGPRRMHCAIHSIPVSCIQQGGNAPTPTSFTACVDNQCSPLPASKGKEPETDASSTCIQGAQIQDLGESLVLKNKAPRWHEQLRCWCLNFRGRVTVASVKNFQLVVDVDPALNVSVEEQEKIILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE 479
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2191845 2194884 + CmoCh07G004800.1 Cmo07g00480 385788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g00480 479 ProSitePatterns Tub family signature 2. 464 479 IPR018066 -
Cmo07g00480 479 MobiDBLite consensus disorder prediction 67 97 - -
Cmo07g00480 479 PANTHER TUBBY-RELATED 47 166 - -
Cmo07g00480 479 PANTHER TUBBY-RELATED 181 479 - -
Cmo07g00480 479 PANTHER TUBBY-LIKE F-BOX PROTEIN 47 166 - -
Cmo07g00480 479 Gene3D - 94 147 - -
Cmo07g00480 479 SUPERFAMILY F-box domain 95 144 IPR036047 GO:0005515
Cmo07g00480 479 Pfam F-box domain 101 147 IPR001810 GO:0005515
Cmo07g00480 479 Pfam Tub family 188 474 IPR000007 -
Cmo07g00480 479 ProSitePatterns Tub family signature 1. 407 420 IPR018066 -
Cmo07g00480 479 PANTHER TUBBY-LIKE F-BOX PROTEIN 181 479 - -
Cmo07g00480 479 SUPERFAMILY Tubby C-terminal domain-like 186 479 IPR025659 -
Cmo07g00480 479 Gene3D Tubby Protein; Chain A 179 479 IPR025659 -
Cmo07g00480 479 MobiDBLite consensus disorder prediction 67 84 - -
Cmo07g00480 479 PRINTS Tubby superfamily signature 242 258 IPR000007 -
Cmo07g00480 479 PRINTS Tubby superfamily signature 389 406 IPR000007 -
Cmo07g00480 479 PRINTS Tubby superfamily signature 407 423 IPR000007 -
Cmo07g00480 479 PRINTS Tubby superfamily signature 436 455 IPR000007 -
Cmo07g00480 479 PRINTS Tubby superfamily signature 457 479 IPR000007 -
Cmo07g00480 479 PRINTS Tubby superfamily signature 302 329 IPR000007 -
Cmo07g00480 479 PRINTS Tubby superfamily signature 260 284 IPR000007 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g00480 Cmo-Chr7:2191845 Cmo04g02565 Cmo-Chr4:18784932 8.69E-137 dispersed
Cmo01g01979 Cmo-Chr1:14009925 Cmo07g00480 Cmo-Chr7:2191845 8.10E-152 wgd
Cmo16g00672 Cmo-Chr16:3330233 Cmo07g00480 Cmo-Chr7:2191845 0 wgd
Cmo04g00803 Cmo-Chr4:4013710 Cmo07g00480 Cmo-Chr7:2191845 0 wgd
Cmo07g00480 Cmo-Chr7:2191845 Cmo09g00146 Cmo-Chr9:656942 2.09E-169 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10105 PF01167 Tub 1.80E-96 CL0395 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g00480 K19600 - csv:101221704 676.011