Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g00483 ATGGAGATGAGAGGTGAAGATGAGGAAATAGGAACTCCTTCCCCTTTGTGCTATCAATCAAATACGGAATCTTCAACCAAACTGCCTAATTCTGATCATTCACATCTAACACCAGCTGATACCAGAAGAGATCACACAGTACCCCAGCTCCATTTCTCTCATCAACTGAATCAAAACCATCACAAACTGAGTCTGCATCAGTATTTGCACAAACACACAACAGACCATCCTGTAGCAACCCCAGATCCAGTCCAGACCTCCGTTACTGCCTCACCCTCTGCAGATACTCAGCCGATCGCAAGCAGCAGATCAATCTCAAGAACACCACCTGCAAGTAATAATGTTATTCCTTCAGTTCGGTATCGAGAATGTTTGAAGAACCACGCAGCGAGTACTGGAGGCCATGTTCTCGATGGTTGTGGCGAGTTCATGCCTGGTGGAGAAACTGGAACCCCCGAGGCCTTGAAGTGTGCAGCCTGTGAATGCCATCGGAACTTTCACCGGAAAGAGGTGAAAGATCACGAGCCCACACAGCTAGCTGTACCCAGTGGCTTTTTCATCTCCAACACCATAAGAAACAATGGCTATCGCACTGATGGGTCACCAGTTCCCCTCTCCCGCCACCATCAATTGCCGGCAGTTCCAATTTCTTCGATGATGGCATTTGGAGGAAGCAATGGAGCTCCGGACGAGTCTTCAAGTGAAGATCTAAACATGTTTCACCAGTCCAATAATGGAGCCCGGGACCTGTTCGGTCAGCAGCAACAATTAATGAAAAAACGATTTAGAACAAAGTTCACACAGGGACAGAAGGACAAGATGGAAGAGTTTGCCGAAAAACTGGGGTGGAGAATTCAGAAACACGATGAATTGGAAGTGCAGCAGTTCTGCGCTGAGGTGGGCGTAAGGAGGCAAGTTTTCAAGGTTTGGATGCACAACAACAAACAAGCCATGAAGAAGAAACAAACGTAA 972 47.22 MEMRGEDEEIGTPSPLCYQSNTESSTKLPNSDHSHLTPADTRRDHTVPQLHFSHQLNQNHHKLSLHQYLHKHTTDHPVATPDPVQTSVTASPSADTQPIASSRSISRTPPASNNVIPSVRYRECLKNHAASTGGHVLDGCGEFMPGGETGTPEALKCAACECHRNFHRKEVKDHEPTQLAVPSGFFISNTIRNNGYRTDGSPVPLSRHHQLPAVPISSMMAFGGSNGAPDESSSEDLNMFHQSNNGARDLFGQQQQLMKKRFRTKFTQGQKDKMEEFAEKLGWRIQKHDELEVQQFCAEVGVRRQVFKVWMHNNKQAMKKKQT 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2202787 2203758 - CmoCh07G004830.1 Cmo07g00483 385791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g00483 323 MobiDBLite consensus disorder prediction 14 35 - -
Cmo07g00483 323 MobiDBLite consensus disorder prediction 1 41 - -
Cmo07g00483 323 MobiDBLite consensus disorder prediction 79 115 - -
Cmo07g00483 323 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 121 170 IPR006456 -
Cmo07g00483 323 SUPERFAMILY Homeodomain-like 256 320 IPR009057 -
Cmo07g00483 323 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 55 321 - -
Cmo07g00483 323 Pfam ZF-HD protein dimerisation region 119 171 IPR006456 -
Cmo07g00483 323 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 7 55 321 - -
Cmo07g00483 323 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 259 316 IPR006455 -
Cmo07g00483 323 MobiDBLite consensus disorder prediction 74 115 - -
Cmo07g00483 323 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 120 171 IPR006456 -
Cmo07g00483 323 Gene3D - 247 320 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g00894 Cmo07g00483 CCT
Cmo04g00894 Cmo07g00483 ECH
Cmo03g00772 Cmo07g00483 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00254 Cmo-Chr5:1089513 Cmo07g00483 Cmo-Chr7:2202787 9.94E-68 dispersed
Cmo07g00483 Cmo-Chr7:2202787 Cmo07g00569 Cmo-Chr7:2559410 5.12E-54 dispersed
Cmo15g00287 Cmo-Chr15:1354802 Cmo07g00483 Cmo-Chr7:2202787 5.22E-23 dispersed
Cmo16g00676 Cmo-Chr16:3347008 Cmo07g00483 Cmo-Chr7:2202787 1.90E-33 dispersed
Cmo18g01173 Cmo-Chr18:11839574 Cmo07g00483 Cmo-Chr7:2202787 6.79E-43 dispersed
Cmo12g00418 Cmo-Chr12:2570610 Cmo07g00483 Cmo-Chr7:2202787 1.55E-69 wgd
Cmo03g00772 Cmo-Chr3:6406729 Cmo07g00483 Cmo-Chr7:2202787 2.41E-128 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10106 PF04770 ZF-HD_dimer 1.90E-30 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g00483 - - csv:101220687 496.123