Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo07g00483 | ATGGAGATGAGAGGTGAAGATGAGGAAATAGGAACTCCTTCCCCTTTGTGCTATCAATCAAATACGGAATCTTCAACCAAACTGCCTAATTCTGATCATTCACATCTAACACCAGCTGATACCAGAAGAGATCACACAGTACCCCAGCTCCATTTCTCTCATCAACTGAATCAAAACCATCACAAACTGAGTCTGCATCAGTATTTGCACAAACACACAACAGACCATCCTGTAGCAACCCCAGATCCAGTCCAGACCTCCGTTACTGCCTCACCCTCTGCAGATACTCAGCCGATCGCAAGCAGCAGATCAATCTCAAGAACACCACCTGCAAGTAATAATGTTATTCCTTCAGTTCGGTATCGAGAATGTTTGAAGAACCACGCAGCGAGTACTGGAGGCCATGTTCTCGATGGTTGTGGCGAGTTCATGCCTGGTGGAGAAACTGGAACCCCCGAGGCCTTGAAGTGTGCAGCCTGTGAATGCCATCGGAACTTTCACCGGAAAGAGGTGAAAGATCACGAGCCCACACAGCTAGCTGTACCCAGTGGCTTTTTCATCTCCAACACCATAAGAAACAATGGCTATCGCACTGATGGGTCACCAGTTCCCCTCTCCCGCCACCATCAATTGCCGGCAGTTCCAATTTCTTCGATGATGGCATTTGGAGGAAGCAATGGAGCTCCGGACGAGTCTTCAAGTGAAGATCTAAACATGTTTCACCAGTCCAATAATGGAGCCCGGGACCTGTTCGGTCAGCAGCAACAATTAATGAAAAAACGATTTAGAACAAAGTTCACACAGGGACAGAAGGACAAGATGGAAGAGTTTGCCGAAAAACTGGGGTGGAGAATTCAGAAACACGATGAATTGGAAGTGCAGCAGTTCTGCGCTGAGGTGGGCGTAAGGAGGCAAGTTTTCAAGGTTTGGATGCACAACAACAAACAAGCCATGAAGAAGAAACAAACGTAA | 972 | 47.22 | MEMRGEDEEIGTPSPLCYQSNTESSTKLPNSDHSHLTPADTRRDHTVPQLHFSHQLNQNHHKLSLHQYLHKHTTDHPVATPDPVQTSVTASPSADTQPIASSRSISRTPPASNNVIPSVRYRECLKNHAASTGGHVLDGCGEFMPGGETGTPEALKCAACECHRNFHRKEVKDHEPTQLAVPSGFFISNTIRNNGYRTDGSPVPLSRHHQLPAVPISSMMAFGGSNGAPDESSSEDLNMFHQSNNGARDLFGQQQQLMKKRFRTKFTQGQKDKMEEFAEKLGWRIQKHDELEVQQFCAEVGVRRQVFKVWMHNNKQAMKKKQT | 323 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 2202787 | 2203758 | - | CmoCh07G004830.1 | Cmo07g00483 | 385791 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo07g00483 | 323 | MobiDBLite | consensus disorder prediction | 14 | 35 | - | - | |
Cmo07g00483 | 323 | MobiDBLite | consensus disorder prediction | 1 | 41 | - | - | |
Cmo07g00483 | 323 | MobiDBLite | consensus disorder prediction | 79 | 115 | - | - | |
Cmo07g00483 | 323 | ProSiteProfiles | Zinc-finger ZF-HD dimerization-type profile. | 121 | 170 | IPR006456 | - | |
Cmo07g00483 | 323 | SUPERFAMILY | Homeodomain-like | 256 | 320 | IPR009057 | - | |
Cmo07g00483 | 323 | PANTHER | ZINC-FINGER HOMEODOMAIN PROTEIN 2 | 55 | 321 | - | - | |
Cmo07g00483 | 323 | Pfam | ZF-HD protein dimerisation region | 119 | 171 | IPR006456 | - | |
Cmo07g00483 | 323 | PANTHER | ZINC-FINGER HOMEODOMAIN PROTEIN 7 | 55 | 321 | - | - | |
Cmo07g00483 | 323 | TIGRFAM | homeo_ZF_HD: homeobox domain, ZF-HD class | 259 | 316 | IPR006455 | - | |
Cmo07g00483 | 323 | MobiDBLite | consensus disorder prediction | 74 | 115 | - | - | |
Cmo07g00483 | 323 | TIGRFAM | ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain | 120 | 171 | IPR006456 | - | |
Cmo07g00483 | 323 | Gene3D | - | 247 | 320 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo04g00894 | Cmo07g00483 | CCT | |
Cmo04g00894 | Cmo07g00483 | ECH | |
Cmo03g00772 | Cmo07g00483 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo05g00254 | Cmo-Chr5:1089513 | Cmo07g00483 | Cmo-Chr7:2202787 | 9.94E-68 | dispersed | |
Cmo07g00483 | Cmo-Chr7:2202787 | Cmo07g00569 | Cmo-Chr7:2559410 | 5.12E-54 | dispersed | |
Cmo15g00287 | Cmo-Chr15:1354802 | Cmo07g00483 | Cmo-Chr7:2202787 | 5.22E-23 | dispersed | |
Cmo16g00676 | Cmo-Chr16:3347008 | Cmo07g00483 | Cmo-Chr7:2202787 | 1.90E-33 | dispersed | |
Cmo18g01173 | Cmo-Chr18:11839574 | Cmo07g00483 | Cmo-Chr7:2202787 | 6.79E-43 | dispersed | |
Cmo12g00418 | Cmo-Chr12:2570610 | Cmo07g00483 | Cmo-Chr7:2202787 | 1.55E-69 | wgd | |
Cmo03g00772 | Cmo-Chr3:6406729 | Cmo07g00483 | Cmo-Chr7:2202787 | 2.41E-128 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
10106 | PF04770 | ZF-HD_dimer | 1.90E-30 | No_clan | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo07g00483 | - | - | csv:101220687 | 496.123 |