Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g00485 ATGATGCAACGCTGTGGAAGCTACCAATGCTACTCCGCCGGAGAGTGTTCTTGTGAGGCTGCGTTTTACGGGCAGCAGACCACCTTCTTCTCCATGCCTGCTTACAACAATTACTATGAATCTCAACATTATTCTTTCCAATCCTCTTCTCCGGTTGTCGATTGTACGCTCTCTCTCGGTACCCCCTCCACTCGTATGACGGAGTTTGATGAGAAACGCCGCGAGGAGCAGCAATCCGCTTCTAATTTCGCCTGGGATTTATCTCGCACCAAACATCCTCCCTCCTCCAAAAGTGGCCGCCGTGGTGGTGATAAATCCAGCTCCAATGCTGACCAAATGTTCGCTCGCCACTGCGCCAATTGCGACACCACTACCACCCCCCTCTGGCGCAACGGCCCTAGTGGCCCAAAGTCGTTATGCAATGCGTGTGGGATTAGATACAAAAAGGAAGAGAGAAAAGCAGCGAGTTCAGGGCAGCAAGCGAGTTCGATGTACAGAAACGAGACAAGCTCGTGGCTTCAGCACCACTCGCACACCCAAAGAACACCCAGATTCGCTCATGGAATTGGGAATGATATGAATCCGAGCGTGGCCATTCTGTCATGGAGCCTCAACGACACAGAACAACCTCAGCTTTACTACGACTTCACAAGTTGA 657 51.45 MMQRCGSYQCYSAGECSCEAAFYGQQTTFFSMPAYNNYYESQHYSFQSSSPVVDCTLSLGTPSTRMTEFDEKRREEQQSASNFAWDLSRTKHPPSSKSGRRGGDKSSSNADQMFARHCANCDTTTTPLWRNGPSGPKSLCNACGIRYKKEERKAASSGQQASSMYRNETSSWLQHHSHTQRTPRFAHGIGNDMNPSVAILSWSLNDTEQPQLYYDFTS 218
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2209766 2210822 - CmoCh07G004850.1 Cmo07g00485 385793

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g00485 218 ProSiteProfiles GATA-type zinc finger domain profile. 112 148 IPR000679 GO:0006355|GO:0043565
Cmo07g00485 218 Pfam GATA zinc finger 118 152 IPR000679 GO:0006355|GO:0043565
Cmo07g00485 218 CDD ZnF_GATA 118 149 IPR000679 GO:0006355|GO:0043565
Cmo07g00485 218 SMART GATA_3 112 163 IPR000679 GO:0006355|GO:0043565
Cmo07g00485 218 MobiDBLite consensus disorder prediction 66 109 - -
Cmo07g00485 218 Gene3D - 114 183 IPR013088 GO:0006355|GO:0008270
Cmo07g00485 218 PANTHER GATA TRANSCRIPTION FACTOR 18 1 215 IPR044272 GO:0003700|GO:0009908
Cmo07g00485 218 PANTHER GATA TRANSCRIPTION FACTOR 18 1 215 - -
Cmo07g00485 218 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 114 153 - -
Cmo07g00485 218 ProSitePatterns GATA-type zinc finger domain. 118 143 IPR000679 GO:0006355|GO:0043565
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g00485 - - - cmo:103485050 384.03
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo03g00775 Cmo07g00485 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g00485 Cmo-Chr7:2209766 Cmo11g00702 Cmo-Chr11:3384478 2.38E-13 dispersed
Cmo20g00060 Cmo-Chr20:336166 Cmo07g00485 Cmo-Chr7:2209766 3.79E-12 transposed
Cmo03g00775 Cmo-Chr3:6413147 Cmo07g00485 Cmo-Chr7:2209766 4.71E-139 wgd
Cmo04g00807 Cmo-Chr4:4030807 Cmo07g00485 Cmo-Chr7:2209766 3.19E-48 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g976 Blo04g00918 Blo16g00045 . . Bpe15g00429 Bpe13g00444 . . . . . Cma07g00487 Car03g00682 Car07g00427 Sed14g1121 Cpe19g00810 Cpe10g00615 Bhi03g01300 Tan03g1982 Cmetu07g2099 . Hepe04g1516 . . Cla01g01911 Cam01g1998 Cec04g1653 Cco04g1715 Clacu01g2017 Cmu01g1891 Cre04g1567 . . . . Lsi01g00673 . Chy07g01246 . . . Bda11g01866 . . . Bma03g00990 . . Cmo03g00775 Cmo07g00485 . . . . . . . . . . . . . . . . . . . . . . Chy02g00647 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002166 2 2 2 1 2 2 3 2 2 2 2 2 3 2 2 3 2 3 3 2 2 1 2 2 2 2 2 4 2 1 64
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10107 PF00320 GATA 3.00E-18 CL0167 Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo07g00485 Cmo_Chr07 FPKM 10.766154 10.769688 45.597359 42.607941 22.202879 26.385408 20.788383 4.292158 4.018629 3.207002