Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g00500 ATGCCGGTCGATTTCGACAGTTCCTCACCGGCTTCCGGCGAACCCACCGTCTCCACCCCCGGAAACCCCGTCCCGCCTCCCAACTCCGCCGTAAGGAAAAAGCGAAACCTCCCTGGAATGCCAGATCCGGAAGCGGAAGTAATTGCTCTGTCTCCGAAGACCCTTTTGGCCACAAATCGATTTGTTTGCGAGATTTGCAACAAGGGGTTTCAGAGGGATCAGAATCTACAGCTTCACCGGCGAGGACACAATCTTCCATGGAAGCTCCGGCAGAGGTCAAGTAAGGAGGTCAAGAAGAAGGTCTATGTCTGCCCTGAGAGTTCATGTGTTCATCACGATCCCTCTAGAGCTCTTGGTGATCTGACTGGGATTAAAAAGCACTTTTGCAGAAAGCACGGCGAGAAGAAATGGAAATGCGGTAAGTGTTCTAAGAACTACGCCGTTCAGTCCGATTGGAAAGCTCACTCCAAAATTTGTGGCACTCGTGAGTATAAATGCGATTGTGGGACTTTGTTTAACAGGAGGGATAGCTTCATTACACATAGAGCATTCTGTGATGTATTGGCGGAGGAAAGGGCAAAAGCTCTGCTTAAACTGGTGGCGAAACCGAATCCGGAGCCTTCTCCGCCGCCTCCACCATCGCCGCCGCCTCCATCTCCTCCGCAGTCAAGTGGTGAGCCAACAACTGTGTTGGCTGTTCCAAGTCAAGAGCTGCCAGAGAATCGCTTGCAATGTATCGAAGAGGCACCCGATATGTCGGGTACGAGTCGGAGTAGCAGCAGCAGCAGCAGCAGCAATGGTAGCACGAGAAGTAGCAGATTTGCTGGCTTATTTGCTTCCTCAACTACGTCGATGAGCCTCCAACCTCCAATACCATATAGAGACCTAATGCAAGCCATGGCTTGTTCAGATCGCTCACCAGACTATGCACCATCTTCAACCATTGAGCCTATTTCTCTATGTCTTGCAATGAATCAAGGGCCCCAGATGTTTGGAACTGCTAGCCAAGACCACAGACCGTACTTACCAATGCCACACCCTGCAATGTCCGCCACAGCATTACTCCAAAAAGCTGCTCAAGTGGGCGCAGCGGCATCAAATGCCTCGTTGCTTCGTGGCTTAAGCTTTGTGTCATCTTCCTCTGCAGCTGCCCAGCAAGAGAGCTTGGCACGGAACCACCAGAGGCGAGTCGAACCAGATGGCGTGTCGATCGCTGCAGGGCTCGGCCTCGGACTCCCCTGTGATGGGAACTCGGGATTGAAGGAACTAATAAGGGGAAACCATTCCATGTTTGCTCCAAAACACACCACCCTTGATTTCCTCGGATTGGGAATGGCGGCTGGTGGCAGCCCCAACAGCGGCCTGGCCTCACTAATCACATCAATAGGCGGGAGTGTGGATGTTACAACCACAACCCCCGGAGACATATCCACCGTCGGAGAGGTCTCGGAGAATGGTAGGTGGATGGGATTTGTGAAAATTTTCTGTAAAATCATGTCGGCCGATGTAGAAGATTCGTCTATAGCTTCCATAGAGGGTAGCGTTTCTTCTCCTGGAGCGAAATCTGCTACTAAGAAGAAGCGAAATCTTCCCGGAATGCCAGATCCGGAGGCAGAAGTAATTGCTCTGTCTCCGAAGACCCTTTTGGCCACGAATCGATTTGTTTGCGAGATTTGCAACAAGGGGTTTCAGAGGGATCAGAATCTACAGCTTCACCGGCGAGGACACAATCTTCCATGGAAGCTCCGGCAGAGATCAAGTAAGGAGGTCAAGAAGAAGGTCTATGTCTGCCCTGAGAGTTCATGTGTTCATCACGATCCCTCTAGAGCTCTTGGTGATCTGACTGGGATTAAAAAGCACTTTTGCAGAAAGCACGGCGAGAAGAAATGGAAATGCGACAAGTGTTCTAAGAAATACGCCGTTCAGTCCGATTGGAAAGCTCACTCCAAAATCTGTGGCACTCGCGAGTATAAATGCGATTGTGGGACTTTGTTTAACAGGAGGGATAGCTTCATTACACATAGAGCTTTCTGTGATGCATTGGCGGAGGAAAGGGCAAAAGCTCAGCTTAAGCCGGTGGACAAACCGGATTTGGATCCAGACATAGGCGATTCTCAGACGAAGGTGGCGAAACCCAATCCGGAGCCTTCTCCACCATCGCCACCGCCTCCATCTCCTCCGCAGTCAACGGCTGAGCCAACAACTGTGCTGCCTGTTCCAAGTCAAGAGCTGCCAGAGATTCCCTTGCAATATATCGAAGAGGCACCAGGTATGGCGGCGGCTACGAGCGGGAGCAGTAGTAGCAGCAGCAGCAGCAGCAATAGTAGCACGAGAAGTAGCGGGTTTGCTGGGTTATTTGCTTCTTCAACTACGTCGATAAGCCTCCAACCTCCAAGACCTCCATTTACGAACCTAATGCAAGCCATGGCTTGTTCAGATCGTTCATCAGACTATGCACCATCTTCAACCATTGAACCTATTTCTCTATGTCTTGCAATGAATCAAGGCCCTCCGATGTTCGGAACCGCCAGCCAAGACCTCCGACCGTATGTACCAATGCCACACCCTGCAATGTCCGCTACAGCATTACTCCAAAGAGCTGCTCAAATGGGCGCAGCAGCATCAAGTGCGTCGTTGCTTCGTGGCTTGGGGTTAGTATCATCTTCCTCTTCAGCTGCTCAGCAAGAGAGCTGGCCATGGAACCACCAAAGCCAAGTCGAACCAGATGGCGTCTCGATCGCTGCAGGGCTCGGCCTTGGACTCCCCTGCGATGGAAACTCGGGATTGAAGGAACTAATAAGGGGAAACCATTCCATGTTTGCTCCAAAACACACCACCCTTGATTTCCTTGGATTGGGAATGGCAGCTGGGGGCAGCCCCAACAGTGGCCTGGCTGCACTAATAACCTCAGTAGGCAGCAGCGTGGACGTTGCAACAACCGCTCAATCATACCCAGGCGGCGGCGGCCGCGGCGACATATCCGGCCGCCAGGACATGAACAGAAGCAACTGA 3012 51.86 MPVDFDSSSPASGEPTVSTPGNPVPPPNSAVRKKRNLPGMPDPEAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSSKEVKKKVYVCPESSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCGKCSKNYAVQSDWKAHSKICGTREYKCDCGTLFNRRDSFITHRAFCDVLAEERAKALLKLVAKPNPEPSPPPPPSPPPPSPPQSSGEPTTVLAVPSQELPENRLQCIEEAPDMSGTSRSSSSSSSSNGSTRSSRFAGLFASSTTSMSLQPPIPYRDLMQAMACSDRSPDYAPSSTIEPISLCLAMNQGPQMFGTASQDHRPYLPMPHPAMSATALLQKAAQVGAAASNASLLRGLSFVSSSSAAAQQESLARNHQRRVEPDGVSIAAGLGLGLPCDGNSGLKELIRGNHSMFAPKHTTLDFLGLGMAAGGSPNSGLASLITSIGGSVDVTTTTPGDISTVGEVSENGRWMGFVKIFCKIMSADVEDSSIASIEGSVSSPGAKSATKKKRNLPGMPDPEAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSSKEVKKKVYVCPESSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFNRRDSFITHRAFCDALAEERAKAQLKPVDKPDLDPDIGDSQTKVAKPNPEPSPPSPPPPSPPQSTAEPTTVLPVPSQELPEIPLQYIEEAPGMAAATSGSSSSSSSSSNSSTRSSGFAGLFASSTTSISLQPPRPPFTNLMQAMACSDRSSDYAPSSTIEPISLCLAMNQGPPMFGTASQDLRPYVPMPHPAMSATALLQRAAQMGAAASSASLLRGLGLVSSSSSAAQQESWPWNHQSQVEPDGVSIAAGLGLGLPCDGNSGLKELIRGNHSMFAPKHTTLDFLGLGMAAGGSPNSGLAALITSVGSSVDVATTAQSYPGGGGRGDISGRQDMNRSN 1003
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2256698 2263459 + CmoCh07G005000.1 Cmo07g00500 385808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g00500 1003 MobiDBLite consensus disorder prediction 980 1003 - -
Cmo07g00500 1003 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 499 978 - -
Cmo07g00500 1003 MobiDBLite consensus disorder prediction 760 781 - -
Cmo07g00500 1003 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 83 IPR013087 -
Cmo07g00500 1003 MobiDBLite consensus disorder prediction 689 704 - -
Cmo07g00500 1003 MobiDBLite consensus disorder prediction 510 536 - -
Cmo07g00500 1003 MobiDBLite consensus disorder prediction 1 43 - -
Cmo07g00500 1003 Gene3D Classic Zinc Finger 608 688 - -
Cmo07g00500 1003 MobiDBLite consensus disorder prediction 712 733 - -
Cmo07g00500 1003 Gene3D Classic Zinc Finger 59 159 - -
Cmo07g00500 1003 SUPERFAMILY beta-beta-alpha zinc fingers 553 650 IPR036236 -
Cmo07g00500 1003 Gene3D Classic Zinc Finger 534 604 - -
Cmo07g00500 1003 PANTHER ZINC FINGER PROTEIN GAI-ASSOCIATED FACTOR 1 1 479 - -
Cmo07g00500 1003 ProSiteProfiles Zinc finger C2H2 type domain profile. 554 576 IPR013087 -
Cmo07g00500 1003 ProSitePatterns Zinc finger C2H2 type domain signature. 556 576 IPR013087 -
Cmo07g00500 1003 MobiDBLite consensus disorder prediction 757 781 - -
Cmo07g00500 1003 PANTHER ZINC FINGER PROTEIN GAI-ASSOCIATED FACTOR 1 499 978 - -
Cmo07g00500 1003 Pfam Zinc-finger of C2H2 type 554 576 - -
Cmo07g00500 1003 Pfam Zinc-finger of C2H2 type 61 83 - -
Cmo07g00500 1003 MobiDBLite consensus disorder prediction 689 736 - -
Cmo07g00500 1003 MobiDBLite consensus disorder prediction 201 229 - -
Cmo07g00500 1003 MobiDBLite consensus disorder prediction 249 272 - -
Cmo07g00500 1003 SMART c2h2final6 61 83 IPR013087 -
Cmo07g00500 1003 SMART c2h2final6 554 576 IPR013087 -
Cmo07g00500 1003 SMART c2h2final6 595 625 IPR013087 -
Cmo07g00500 1003 SMART c2h2final6 630 650 IPR013087 -
Cmo07g00500 1003 SMART c2h2final6 102 132 IPR013087 -
Cmo07g00500 1003 SUPERFAMILY beta-beta-alpha zinc fingers 60 157 IPR036236 -
Cmo07g00500 1003 MobiDBLite consensus disorder prediction 251 272 - -
Cmo07g00500 1003 MobiDBLite consensus disorder prediction 203 224 - -
Cmo07g00500 1003 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 479 - -
Cmo07g00500 1003 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo07g00500 Cmo16g00708 CCT
Cmo07g00500 Cmo16g00708 ECH
Cmo03g00791 Cmo07g00500 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00793 Cmo-Chr3:6488562 Cmo07g00500 Cmo-Chr7:2256698 0 dispersed
Cmo07g00500 Cmo-Chr7:2256698 Cmo14g00196 Cmo-Chr14:889620 1.50E-102 dispersed
Cmo16g00708 Cmo-Chr16:3529729 Cmo07g00500 Cmo-Chr7:2256698 6.49E-114 transposed
Cmo01g01957 Cmo-Chr1:13912614 Cmo07g00500 Cmo-Chr7:2256698 3.52E-129 wgd
Cmo12g00430 Cmo-Chr12:2652002 Cmo07g00500 Cmo-Chr7:2256698 6.35E-108 wgd
Cmo03g00791 Cmo-Chr3:6482721 Cmo07g00500 Cmo-Chr7:2256698 5.68E-122 wgd
Cmo07g00500 Cmo-Chr7:2256698 Cmo09g00165 Cmo-Chr9:741745 2.14E-118 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10109 PF12874 zf-met 0.008 CL0361 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g00500 K25869 - csv:101217597 635.18