Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g00502 ATGGCCGCCGCCGACGACGACAATACATTACTGATGTCGAATCTCTACAGCCCTGGAGTTTTTACTCAAATACTCACCCAACAAGGTGCGGCGGAGGGAAATAAGCCGACGAAGCGGAGGCGGCGGAGGAGCAAAGCGAAGGAGGCGGCCGGGGCGGCGGGGTTGAAGAAGAGGAAGCTGAGTACAGAGCAAGTGAAACTTTTAGAGATGAATTTTGGGGATGAACACAAATTGGAATCGGAGAGGAAAGATCGGTTGGCTTCTGAATTGGGACTTGATCCACGACAAGTCGCCATGGCGAAATTGAGCGAGCAATTAAGAGAGGCGAAGAACGAGATCCAACGATTGGTAGAAGGAAGTGAGAAGATTTGGAGCAGTAGCCCGACGTCATCGGAGACGATGGATGCCATGCCACCGCCGGTGCCGTCGTGGGGAGAGCTGTTCTTGGGAGAATATGAAGATGTATTCTATTGCATGCAACAGCAACACGGCAATTACAGTCAAGGAATGGAGTGGCTTAATCTTTATATTTGGTTCATTGGGGACGATGATTCTGAAGATTTGGGTTCCGAGTGCGCCCTCAAGATCGAACCTAGTTTGCTCATTGACCTTCGTTGTTTAAAGATTGGTGAAGTTATTGGCGAAGGTTCTTACTCCATTGTGTATGAAGGACTGTACGATTATCAACCTGTTGCCGTGAAGATTATACAGCCGAGTAGGACATCGGCTATAAGTACTAGAAACAAAGAAAGATTCCTGAGAGAGGTTGCGTTGCTAGCAATAGTGAATCACGAGAACGTTATTCAGTTCATTGGCGCTGCCATAGCGCCGACGTTGATGATAATCACTGAGCTAATGAGAGGTGGATCACTCCAAAAGTACTTGTGGAGCATACGGCCGGAGACCCCAGAACTGAAGCTTTCCTTAAGTTTGGCTCTAGATCTATCACGAGTAATGGCATACTTACATTCAAATGGAGTCGTTCATCGCGACTTAAAGCCAAGCAATCTATTGCTAACAGAAGACAAGCAACGGATTAAACTAGCAGACTTTGGGTTGGCTAGAGAGGAAATATCTGGTGAAATGACTACTGAGGCGGGTACTTACCGATGGATGGCCCCTGAGCTGTTTAGCATTGATCCATTGCCTGTTGGAGGTAGGAAATTTTATGATCACAAGGCAGATGTCTACAGCTTCTCGATAATTCTTTGGGAGTTGATGACAAACAAAACTCCATTCAAGGGCAGAAACAATATAATGGTGGCATATGCCGCAGCTAAGAACATAAGACCAAGTCTTGAAGGAATCCCAGAAGATATCGCCCGTCTCTTGCAGTCATGCTGGGCTGAGGATCCAAAAATCCGTCCAGAATTTACAAAAGTGATAGATTCTCTAAGGAATATTCTCCAAACTTTTTGCTTACAAGAATCTTCAGTTCCTGTCATGGCGGACACAGAGGAGGACGTCGAAGAGGCGGTTCCAGTGGTGGCGCCATTCTCTTCCTCCGCCGTGACTTCATCTTCATTCCGCCCGTCTCCGCCGCCGGGCGGGTTCCGACACACTCGCCCTCATCCACGCGGAGAAGAGGGCACGCCTTCTAAAACTTCCAGACCTCCCTCTTCATCTCAGGAAATACCCCCGACGCCTTCATATCCTGATTGGTCAAGCTCAATGCAGGCTTACTATGGTGCTGGGGCTACTCCTCCTCCTTTCTTTGCATCTACTGTTGCTTCTCCAACTCCCCACCCTTACCTTTGGGGAAGTCAGCATCCTTTGATGCCACCTTATGGAACTCCAGTACCTTATCCAGCTATGTATCCTCCTGGGGGAGTTTATGCACATCCCAATATCACTGTGCCTCCTGGCTCTGCCCCAATTAATGCGGAATATGAAGGAAAATCTCCTGATGGAAAAGAAAGGGCATCCAAGAAATCCAAGGGTACGTCGGGAAATACTGGTTCAGGTGGCGGTAGGACCGGGGAGAGAGGAAAGGTGGCTTCAAGTTCTGGAAATGATGGTGCATCTCAAAGTGAAAGTGGTACTGAGGGCTCATCAGAAGGCAGTGATGAGAATGCTAACCAGCAGGAATTTGCTGCGAATAAGAAGGGCAGCTTCAACCAGATGCTGGCTGATGGAGCCAATGCACAAAGTAACACGGGTGGACCAAATTCCAAATCTTCAGTGACTGGGAAACCCATCACTTCCATTCCTGCAACTAATCTGAACATGGGAATGGATTTGTGGAATACCACCACTGCTGCTTCAGGGGCTGCAAAAGCAAGAGCAAATGCGGTCTCCTCAGCTATTGTTCCAGGAACGATGATTGGTCGTGATGGTGTGATGCCTGAACAATGGGCTCAAGATGAACGAGAGCTAAAACGACAGAAAAGGAAGCAATCTAACCGAGAGTCTGCTAGGAGGTCAAGATTACGTAAGCAGGCGGAGTGTGAAGAATTACAGGCCAGAGTGCAGACACTGAACAACGAGAACCGTACTCTCAGGGATGAGCTGCAGAGACTCTCCGAGGAATGTGAAAAGCTAACATCAGAAAATAGTTCCATCAAGGAAGAATTGACACGATTTTGTGGACCGGAGGCATTAGCTAAATTTGAGAAAGGAACTGCTGCTACTCCAGCTGTCCAGTCGCGCGGTGGTGACGAGGGTTACTTCCAGCCTGATTTGGTCTGGCTGGCCCAATCCTTGATGATTGCTCGTCTGTTACAGTGGTGGAGAAGAACGTAG 2742 48.36 MAAADDDNTLLMSNLYSPGVFTQILTQQGAAEGNKPTKRRRRRSKAKEAAGAAGLKKRKLSTEQVKLLEMNFGDEHKLESERKDRLASELGLDPRQVAMAKLSEQLREAKNEIQRLVEGSEKIWSSSPTSSETMDAMPPPVPSWGELFLGEYEDVFYCMQQQHGNYSQGMEWLNLYIWFIGDDDSEDLGSECALKIEPSLLIDLRCLKIGEVIGEGSYSIVYEGLYDYQPVAVKIIQPSRTSAISTRNKERFLREVALLAIVNHENVIQFIGAAIAPTLMIITELMRGGSLQKYLWSIRPETPELKLSLSLALDLSRVMAYLHSNGVVHRDLKPSNLLLTEDKQRIKLADFGLAREEISGEMTTEAGTYRWMAPELFSIDPLPVGGRKFYDHKADVYSFSIILWELMTNKTPFKGRNNIMVAYAAAKNIRPSLEGIPEDIARLLQSCWAEDPKIRPEFTKVIDSLRNILQTFCLQESSVPVMADTEEDVEEAVPVVAPFSSSAVTSSSFRPSPPPGGFRHTRPHPRGEEGTPSKTSRPPSSSQEIPPTPSYPDWSSSMQAYYGAGATPPPFFASTVASPTPHPYLWGSQHPLMPPYGTPVPYPAMYPPGGVYAHPNITVPPGSAPINAEYEGKSPDGKERASKKSKGTSGNTGSGGGRTGERGKVASSSGNDGASQSESGTEGSSEGSDENANQQEFAANKKGSFNQMLADGANAQSNTGGPNSKSSVTGKPITSIPATNLNMGMDLWNTTTAASGAAKARANAVSSAIVPGTMIGRDGVMPEQWAQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVQTLNNENRTLRDELQRLSEECEKLTSENSSIKEELTRFCGPEALAKFEKGTAATPAVQSRGGDEGYFQPDLVWLAQSLMIARLLQWWRRT 913
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2267677 2278713 - CmoCh07G005020.1 Cmo07g00502 385810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g00502 913 SUPERFAMILY Homeodomain-like 56 98 IPR009057 -
Cmo07g00502 913 SUPERFAMILY Protein kinase-like (PK-like) 200 481 IPR011009 -
Cmo07g00502 913 PANTHER G-BOX-BINDING FACTOR 3-RELATED 527 885 IPR044827 GO:0003700|GO:0006355|GO:0043565
Cmo07g00502 913 SMART HOX_1 54 107 IPR001356 GO:0003677
Cmo07g00502 913 ProSitePatterns Serine/Threonine protein kinases active-site signature. 327 339 IPR008271 GO:0004672|GO:0006468
Cmo07g00502 913 PANTHER G-BOX-BINDING FACTOR 1 527 885 - -
Cmo07g00502 913 MobiDBLite consensus disorder prediction 27 56 - -
Cmo07g00502 913 Gene3D - 792 849 - -
Cmo07g00502 913 SMART serkin_6 207 472 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo07g00502 913 Pfam G-box binding protein MFMR 529 617 IPR012900 -
Cmo07g00502 913 MobiDBLite consensus disorder prediction 503 553 - -
Cmo07g00502 913 ProSitePatterns Protein kinases ATP-binding region signature. 213 234 IPR017441 GO:0005524
Cmo07g00502 913 MobiDBLite consensus disorder prediction 664 693 - -
Cmo07g00502 913 Gene3D Transferase(Phosphotransferase) domain 1 197 495 - -
Cmo07g00502 913 SMART brlzneu 789 853 IPR004827 GO:0003700|GO:0006355
Cmo07g00502 913 Gene3D - 51 99 - -
Cmo07g00502 913 PRINTS Tyrosine kinase catalytic domain signature 283 296 IPR001245 GO:0004672|GO:0006468
Cmo07g00502 913 PRINTS Tyrosine kinase catalytic domain signature 436 458 IPR001245 GO:0004672|GO:0006468
Cmo07g00502 913 PRINTS Tyrosine kinase catalytic domain signature 321 339 IPR001245 GO:0004672|GO:0006468
Cmo07g00502 913 PRINTS Tyrosine kinase catalytic domain signature 394 416 IPR001245 GO:0004672|GO:0006468
Cmo07g00502 913 SUPERFAMILY Leucine zipper domain 792 848 IPR046347 GO:0003700|GO:0006355
Cmo07g00502 913 ProSiteProfiles Protein kinase domain profile. 207 469 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo07g00502 913 MobiDBLite consensus disorder prediction 711 733 - -
Cmo07g00502 913 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 796 811 IPR004827 GO:0003700|GO:0006355
Cmo07g00502 913 MobiDBLite consensus disorder prediction 623 693 - -
Cmo07g00502 913 Coils Coil 99 119 - -
Cmo07g00502 913 CDD bZIP_plant_GBF1 794 844 IPR045314 GO:0003700|GO:0006355
Cmo07g00502 913 MobiDBLite consensus disorder prediction 783 798 - -
Cmo07g00502 913 Pfam Homeodomain 57 98 IPR001356 GO:0003677
Cmo07g00502 913 MobiDBLite consensus disorder prediction 780 812 - -
Cmo07g00502 913 CDD STKc_MAP3K-like 213 465 - -
Cmo07g00502 913 MobiDBLite consensus disorder prediction 533 553 - -
Cmo07g00502 913 Coils Coil 802 857 - -
Cmo07g00502 913 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 791 854 IPR004827 GO:0003700|GO:0006355
Cmo07g00502 913 Pfam bZIP transcription factor 789 851 IPR004827 GO:0003700|GO:0006355
Cmo07g00502 913 Pfam Protein tyrosine and serine/threonine kinase 207 465 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00798 Cmo-Chr3:6497862 Cmo07g00502 Cmo-Chr7:2267677 0 dispersed
Cmo06g00633 Cmo-Chr6:3138763 Cmo07g00502 Cmo-Chr7:2267677 1.22E-62 dispersed
Cmo06g01064 Cmo-Chr6:8264306 Cmo07g00502 Cmo-Chr7:2267677 3.37E-42 dispersed
Cmo07g00502 Cmo-Chr7:2267677 Cmo10g00095 Cmo-Chr10:410087 3.26E-95 dispersed
Cmo14g02149 Cmo-Chr14:15463162 Cmo07g00502 Cmo-Chr7:2267677 1.03E-33 dispersed
Cmo16g01240 Cmo-Chr16:8879499 Cmo07g00502 Cmo-Chr7:2267677 1.34E-60 dispersed
Cmo03g00796 Cmo-Chr3:6493621 Cmo07g00502 Cmo-Chr7:2267677 0 wgd
Cmo04g00828 Cmo-Chr4:4132503 Cmo07g00502 Cmo-Chr7:2267677 2.52E-25 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10110 PF07714 PK_Tyr_Ser-Thr 1.30E-53 CL0016 Cmo TF
74459 PF07714 PK_Tyr_Ser-Thr 1.30E-53 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g00502 K09060 - csv:101217128 603.594