Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g00505 ATGACAGCCCAAGAAACCAAAGCCCATGTTGCTTTACTGGTCAGCCCCGGCATGGGCCACCTCATTCCCTTCCTTGAGCTAGCCCACCGCCTTGTCCACCACCACAACCTCCACGCCACCCTCTTCGTCGTCTGCTCTGGCACCTCCGCCGCCGAGTCCCTCCTCCTCCAGAAATCCTCTGCTGTCAACGTCGTGCCTCTTCGCCCCTCCGTCAGTCTCGACCCAAATGCCAATTTCATCGATAAACTCAAGGCCATAATGTCCGCCTCTCCTTCCCTCCTTCGGCGCTCCCTCTCTACTGCGAAGCCCCGCCCGGCGGCGCTGATTGTCGACCTTTTTGGGACATGGGCTCTTGCCATAGCCCACGAACTTGGCATGTTGGGGTTCGTTTTCATGACCACTAGTGCTTGGTTCCTTTCGCTTGCCAGGTTTTTTCCCACCATGGACAAGCAGATGATCAACGACCACGTGTACAACCACGAACCGCTGAGAATCCCGGGTTGCAGCCCGGTCCGGTTCGAGAATACCACCCAGGTGTTAGAGAACGGTGTCTACGACGACTTTGAACTTATGGCAAGGGAGCTTGGAACGGCTGATGGGATCTTATCGAACACGTGGCAGGATCTGGAGCCCACTAACATAAAAGCGCTAACTGAAATTGAGACTCTCACCTTTGGGAAAGCCGAAGGAGTCCCGATTTATCCAATTGGGCCGTTGACTAGACATGCTGAGCCCAATTTGGAGAGCGAGGTGCTGAAGTGGCTCGACAGGCAACCGGATGAGTCGGTGATATATGTGTCGTTTGGGAGTGGGGGGACGTTGAGTGAAGAGCAAATCAAGGAATTGGCGTGGGGGTTGGAGCTGAGTCAGCAGCGGTTCGTTTGGGTGATACGGCCGCCGGTGGATACGGATTCCTCGGGGACATTTTTCACAGCAGGGAACGAATCGAGGGACCACAAGTGGCCGCCGGAATACCTTCCGGAAGGATTTGTAAACAGGACGAAAGAGGTGGGTTTGCTTGTTCCGATGTGGGGACCACAGGCAGAGATTTTGAGTCACCGATCGGTAAGGGGATTTTTGACGCACACTGGTTGGAACTCGTCGTTAGAGAGCATAGTGAACGGAGTGGCGATGGTGACGTGGCCACTGTACGCAGAGCAAAAGATGAACGCGGCGGAGCTGACGGAGGAGGTGGGAGTGGGGGTAAGGGTGTCGCGGGGGTTGGTGAGTAGGGGGGAGATAGAGAGTAAGGTGAGGAAGATAATGGCGGAGGAGGATGAAGAAGGGCGGAGAATCAGAGAGAGGGTTAAGGCGCTTAAGCGTAGTGGGGAAAGGGCCGCCGCCAAGGGTGGGTCGTCGTATAATTCGCTGGCTAAGGTGGCTGCAGAATGTGACATTTTCCGCCGCCAGACACAGCTCAGGATGGCCGCCGCCGCCTGA 1440 56.11 MTAQETKAHVALLVSPGMGHLIPFLELAHRLVHHHNLHATLFVVCSGTSAAESLLLQKSSAVNVVPLRPSVSLDPNANFIDKLKAIMSASPSLLRRSLSTAKPRPAALIVDLFGTWALAIAHELGMLGFVFMTTSAWFLSLARFFPTMDKQMINDHVYNHEPLRIPGCSPVRFENTTQVLENGVYDDFELMARELGTADGILSNTWQDLEPTNIKALTEIETLTFGKAEGVPIYPIGPLTRHAEPNLESEVLKWLDRQPDESVIYVSFGSGGTLSEEQIKELAWGLELSQQRFVWVIRPPVDTDSSGTFFTAGNESRDHKWPPEYLPEGFVNRTKEVGLLVPMWGPQAEILSHRSVRGFLTHTGWNSSLESIVNGVAMVTWPLYAEQKMNAAELTEEVGVGVRVSRGLVSRGEIESKVRKIMAEEDEEGRRIRERVKALKRSGERAAAKGGSSYNSLAKVAAECDIFRRQTQLRMAAAA 479
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2295378 2296817 - CmoCh07G005050.1 Cmo07g00505 385813

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g00505 479 Gene3D Glycogen Phosphorylase B; 249 448 - -
Cmo07g00505 479 PANTHER UDP-GLYCOSYLTRANSFERASE 72E1 3 466 - -
Cmo07g00505 479 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 8 460 - -
Cmo07g00505 479 CDD GT1_Gtf-like 8 449 IPR002213 GO:0008194
Cmo07g00505 479 Pfam UDP-glucoronosyl and UDP-glucosyl transferase 242 425 IPR002213 GO:0008194
Cmo07g00505 479 Gene3D Glycogen Phosphorylase B; 9 453 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g00505 K12356 UGT72E; coniferyl-alcohol glucosyltransferase [EC:2.4.1.111] - csv:101215927 615.92
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo03g00805 Cmo07g00505 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g00505 Cmo-Chr7:2295378 Cmo16g00722 Cmo-Chr16:3609850 3.98E-132 dispersed
Cmo03g00805 Cmo-Chr3:6526951 Cmo07g00505 Cmo-Chr7:2295378 0 wgd
Cmo04g00845 Cmo-Chr4:4220651 Cmo07g00505 Cmo-Chr7:2295378 5.11E-136 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g923 Blo04g00928 . . Bda10g00120 Bpe15g00439 . . Bma15g01008 . . . Cma07g00506 . . . Cpe19g00794 Cpe10g00590 Bhi03g01262 . . . . . . Cla01g01883 . . . . . . . Cone12ag0758 Cone6ag1605 Cone9ag1529 Lsi01g00703 . . Cme08g00822 . . . . Bpe10g00105 . . . . Cmo03g00805 Cmo07g00505 . . . . . . . . . . . . . . . . . . . . Lsi07g00267 Csa06g03213 Chy02g00672 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010742 0 2 0 0 0 1 0 1 1 1 1 1 1 1 1 2 1 2 2 1 1 2 1 2 2 1 1 2 1 0 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo07g00505 Cmo_Chr07 FPKM 11.661908 12.239837 12.835243 13.41836 8.289255 7.924327 7.568241 16.662073 15.191351 16.051601