Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g00506 ATGCCTGAAGAAGCCATGACAGGTAGAGCGTCATCGGGAAGGACGCCGACTTGGAAGGAAAGGGAGAACAATAAGAGGAGGGAGAGACGGCGGAGGGCTATTGCTGCTAAGATCTACACTGGTCTCAGAACTCAGGGGAACTATAAGCTTCCTAAGCACTGTGATAACAACGAGGTCTTGAAGGCGCTTTGTAGTGAAGCTGGTTGGGTGGTTGAAGAAGATGGCACCACCTATCGCAAGGGATGCAAGCCTCCTCCGATTGATATTGGCACTTCTGCTAACATGAGCGCTTGTTCTTCTCTTCAACCAAGCCCACAATCTTCATGTTTCCCAAGTCCTGTACCATCCTACCATGCCAGCCCTTCTTCATCCTCTTTTCCGAGCCCAACTCGATTTGATGGGAATCCATCTTATCTTTTGCCATTCCTTCAAAATATAACCTCTATACCTGCTAATCTCGCACCTCTCAGAATATCAAACAGTGCACCTGTTACGCCACCTCTTTCTTCCCCGACATCGAGGGGTTCGAAGCGAAAACCTGACTGGGAGTCCATTCCAAATAGCTACTTGACCTCTTTCCGCCACCCCCTCTACGCTGTCTCTGCTCCTTCAAGTCCTACAAGATGCCGCCATCTTACACCAGCAACAATTCCAGAATGTGATGAGTCTGATGCTTCTACTGTGGACTCTGGCCGCTGGGTCAGTTTCCAAACTGTAGCACCTTCTGTTGCTCCTCCCTCCCCTACATTTAATCTGATGAAACCAGTGAGCCAGCAAAAGTCTCTCCACGATTCAGTTGACAGACATGGAGCAATGGGCTGGGGTGCTGCATCGGACAGGGGGCGAGGCTCTGAGTTCGAATTCGAGAAATTTGAGAATGGCAAAGTGAAGCCATGGGAGGGTGAGAGAATTCATGAAGTTGGGGTGGACGATTTGGAGCTTACACTTGGGAGTGGGAAGGCCCGTGGTTAA 972 50.0 MPEEAMTGRASSGRTPTWKERENNKRRERRRRAIAAKIYTGLRTQGNYKLPKHCDNNEVLKALCSEAGWVVEEDGTTYRKGCKPPPIDIGTSANMSACSSLQPSPQSSCFPSPVPSYHASPSSSSFPSPTRFDGNPSYLLPFLQNITSIPANLAPLRISNSAPVTPPLSSPTSRGSKRKPDWESIPNSYLTSFRHPLYAVSAPSSPTRCRHLTPATIPECDESDASTVDSGRWVSFQTVAPSVAPPSPTFNLMKPVSQQKSLHDSVDRHGAMGWGAASDRGRGSEFEFEKFENGKVKPWEGERIHEVGVDDLELTLGSGKARG 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2298841 2300921 - CmoCh07G005060.1 Cmo07g00506 385814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g00506 323 MobiDBLite consensus disorder prediction 1 30 - -
Cmo07g00506 323 Pfam BES1/BZR1 plant transcription factor, N-terminal 11 133 IPR008540 -
Cmo07g00506 323 MobiDBLite consensus disorder prediction 15 29 - -
Cmo07g00506 323 PANTHER BES1/BZR1 HOMOLOG PROTEIN 1 6 322 - -
Cmo07g00506 323 MobiDBLite consensus disorder prediction 160 175 - -
Cmo07g00506 323 PANTHER BES1/BZR1 HOMOLOG PROTEIN 3-RELATED 6 322 IPR033264 GO:0003700|GO:0006351|GO:0009742
Cmo07g00506 323 MobiDBLite consensus disorder prediction 160 183 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo03g00806 Cmo07g00506 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00234 Cmo-Chr5:1002966 Cmo07g00506 Cmo-Chr7:2298841 1.45E-90 dispersed
Cmo07g00506 Cmo-Chr7:2298841 Cmo13g00609 Cmo-Chr13:6674594 4.65E-49 dispersed
Cmo12g00435 Cmo-Chr12:2676074 Cmo07g00506 Cmo-Chr7:2298841 8.72E-88 wgd
Cmo03g00806 Cmo-Chr3:6530547 Cmo07g00506 Cmo-Chr7:2298841 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10111 PF05687 BES1_N 1.00E-63 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g00506 K14503 - csv:101216171 554.673