Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g00508 ATGGCTACTACTTCATTGCCTTTACCGGAACTTGTATTCGTCTCGCCGAAGCGGCTTCTGTCTACTTCCAGTTCCAGATGTTCGCACTATAGGATTCCTCTCCCTAGAAGCTGTAGTTTTCGTGTTCTTTTTCGGACTAAGGTCAAGGCTGTTAGAGAAGACGGAGTGATTGTTGACAAGAGAGAGAGCGAGTTGATCAAGGAAGCTAATGGTTATGAACTTGGTGGCAATGGAGCTGCTTACAAGGAGAATGGCGATTACAGGTATAATGGCTGGGTTAATGGTGGAGTTACGGTTGTGGAGAGTGAGACTGATAGTAGTAATGGGAGCTTAATGAAGTATGTTAATGGAAATGGTGTTGCTGCGACGGTGGTGGGGGAAATTCAAGCTTCGGAGTCGACGGAGGAGGGGAGGAAGAAGAGGATAGAGGAGATTGGTAAAGAAGAGGCTTGGTTCAAGCGGAGTGAACAGCAACATACCGAGGTTTCTGTGGCACCTGGTGGACGCTGGAATAGATTTAAAACATATTCAACAATTCAGAGAACCTTGGAGATATGGGGATTTGTTTTTACTTTTATCATTAAGGCTTGGCTTAACAGTCAGAAATTTACTTATCGAGGAGGAATGACAGAGGAGAAGCAGGTTTCCAGAAGAAAGATCCTTGCCAAATGGTTGAAAGAAAGCATTCTAAGATTAGGTCCAACGTTTATTAAAATTGGACAGCAGTTTTCCACAAGAGTGGACATTCTACCACAAGAATATGTTGACCAGTTATCAGAACTTCAGGATCAAGTTCCTCCGTTCCCATCTGAGACAGCAATATCAATAGTTGAAGAAGAGCTTGGAGGTCCTTTGGACAATATATTTGATTGGTTTGATCGTGAACCAATAGCAGCTGCTAGTCTTGGTCAGGTTCATCGTGCAAGATTGAAGGGGCAGGAGGTTGTGGTGAAAGTCCAAAGGCCAAGTCTAAAGGAACTCTTTGACATTGACCTTAAGAACCTAAGGGTCATAGCAGAATACCTTCAAAAATTTGATCCGAAGTCAGATGGTGCAAAGAGAGATTGGGTTGCTATATATGATGAGTGTGCTAACGTCCTGTATCAGGAAATAGATTACACCAAGGAAGCAGCTAATGCCGAGCAGTTTGCAAACAACTTTAAAAACTTGAACTACGTGAAAGTCCCATCAATATTCTGGGACTATACTACTCCACAGGTTCTGACTATGGAGTACGTCCCTGGAATAAAAATAAATAAGATTAAAGCTCTGGATCAACTAGGCATTGATCGAAAACGTTTAGGTCGTTATGCAGTTGAATCTTACCTGGAGCAAATTCTGTCTCATGGATTCTTCCACGCAGATCCTCATCCTGGAAATATTGCTGTCGATGATGTCAATGGAGGAAGGTTGATCTTTTATGATTTTGGAATGATGGGAAGTATCAGTTCAAATATCAGAGAGGGTTTGCTAGAAACGTTCTATGGAGTGTATGAGAAAGATCCGGACAAGGTTCTTCAAGCAATGATTCAAATGGGAGTTCTTGTGCCTACTGGAGACATGACCGCTGTTAGACGAACAGCTCAATTCTTCCTCAACAGTTTTGAAGAACGTTTGGCTGCACAGAGAAGGGAGAGAGAGATGGCAACCGCAGAACTTGGCTTTAAGAAACCATTGACCAAGGAGGAAAAGTTGATGAAGAAAAAGGAACGTCTAGCTGCAATTGGAGAAGATCTATTAGCCATTGCAGCAGACCAACCATTTCGCTTTCCGGCCACATTCACATTTGTTGTTAGAGCATTTTCAGTATTAGATGGCATTGGGAAAGGCCTCGACCCACGATTTGATATTACTGAAATTGCCAAGCCATATGCTCTGGAATTATTGAAATTTCGGGAAGCTGGAGTTGAGGTTGCCGTGAAGGACTTCAGAAAGAGATGGGATAGGCAGTCTCGTGCATTCTATAACTTATTTAGACAGGCCGAAAGAGTTGAAAAACTTGCTGAAGTTATCCAAAGACTGGAGCAAGGTGATCTCAAGCTTAGAGTTCGGGCTTTGGAATCTGAAAGAGCATTCCAACGTGTTGCAACAGTTCAGAAGACGCTAGGAAATGCAATAGCTGCTGGAAGCCTAATCAACCTTGCAACAATATTATATATCAATTCTATTCGGATGCCTGCCACTATTGCCTACATATGTTGTGCCTTTTTTGGGTTCCAAGTCCTCATCGCGAAGCTCGACCCTCAAGGAAATGGGTTGGCTTTCTTGGTGCCTCTCTCGAATGCATCCATAAACAAAATGAAGGGAGCTGAGGGTAAGCAGGGTTTGGATGAAGGCAAGCTTATGAGAAAAAGAGCCTCTGATTCTGAACTCAACTGCCTGCTTGAATTCAAGAAGGGGATTCAGAAAGATCCGCACAACTCGCTTCAGGGGAAGTGGGATTTGGCCTTTGTTTCGAACTCCGATGGTTGTCCTTTGTCCTGGACTGGCGTGTCTTGTGATGAGAACGGTAATGTGTCTGCAATTGTGCTGGACCATCTAGGCTTGGGCGGGGAGTTGAAGTTTCAGACTCTGATTGGGCTTAAGAGCCTTAAGAATTTGAGTCTTTCTGGGAATGATTTCACTGGAAGGCTTGTTCCAGCTCTTGGGACATTATATAGTCTGCAGCATTTGGATCTGTCTTTCAATAGATTTTACGGGCCGATCCCCGCGCGGATCAATGATCTTTACAATCTGAACTATCTTAATTTCTCTGTAAATCACTTCACTGGTGGGTTTCCAGTTGGTACATTAAATCTTAATCAGCTCAAGGTATTGGATTTGCACTCTAATCGACTTTATGGGAACATTGGCCTGTTGGTTTCCCAGCTGCGGAATGTTGAACATGTTGATTTAAGCGACAATGAGTTCTACGGTGGAGTTTCAGTTGGCTCCGGGAACATCTCTAGTCTGGCTAATACTTTGAAGAATTTCAACGTAAGTTTCAATAGATTGAATGGTGGGTTCTTTGACGCTGATTCTCTCATGTTATTTCGAAACTTGGTGCTTTTGGATATGGGTCATAACCAGATTATAGGAGAATTGCCTTCATTTGGGGCCTTGCCTAATCTGCGGATTTTGAGGCTTGGTAATAATCTCTTATCCGGCTTGGTGCCTGGGGAACTGTTAAACAGGTCTTTGCAATTGGAGGAATTGGATCTTAGTGGCAATGCATTTACAGGTAAAGAATCGCTTTGTCTTACTATTTCCCCACTATTTATGGTTCCCTGGAGATTGATTGACTGTTCGATTCTTCACGTCAACTCGTCTACTTTGAAATTTTTGGATCTTTCATCCAACGCTTTATCTGGCGATATATCGATTATGCAGAATTGGGAAGCCAAATTTGAGGTTCTTGATTTAAGTTCAAACAAATTCTCAGGAAGTTTCCCAAACTCAACTTCCTTCTTTGAGGGATTAAAGGTGCTTAATGTCAGAAATAATTTCTTAGTTGGCCCTTTGCCGTTTACATTGGGGAGCTCTCCTAGTATATATGCTGTTGACTTCAGTTTAAATGCTCTTAGCGGTACGATCCCTGCTAGTTTCTTATCATCTGTTACCTTGATCAGCCTTAATCTTTCAGGAAACCGGTTTACGGGTCCCATTCCCCTTCAAGGCTCAAGTGTTAGTGAGTTGTTAGTTAAACCTTCAGACCCGCCAATGGAATATCTTGATCTATCCAATAATTCCTTGACTGGTGGGATTTCAGCTGAGATAGATAAGTTGGTGAGGCTCAAATTGCTAAATCTTGCCAAGAATGAATTATCAGGATCGCTTCCTGATCAATTGAACAGATTGAGTAACTTGGAGTATCTTGATTTATCAAACAACAAATTTACCGGTAAAATCCCGGATATGCTTCCCAATCTACTTGTTTTTAACGTGTCCTACAATGATCTCTCAGGTGACGTTCCAGAGAATTTAAGAAACTTCCCTATCTCATCATTTCGTCCTGGAAATGGTAAGCTTAGCTTACCAGAAGATATAGGTCCTCAGAACACGATTCCAAATAATTTCTCCGAGCCGGGAAGACATCGTACTCCTAAAGCTAACATCCAAATAGCTATTATTCTTGCCTCAGTTGGAGCAGTTGTGATGATTGTTTTTCTTTTACTGGCCTATCATAGAGCACAACTTAAAGATTTCCATGGAAGAAGTATATTTAGCAGCCAAGGTGCTGAGAGGGACATTAAGATAGAACATTTCGGGCCTTCTCTTTTCAAATTTCAACCAAACAATCAGCCTCCACCAACCTCTTCAAGTTTGTCAAATGATCATTTACTAACCTCCACTTCAAGATCATTATCAGGGCAAGCAGAATTCTTATCTGAGATTTCGGAACATGTTTTACCTGGAGGAGCTGCAACAAGTTCATCGATGATTATTCCTAATTTGCTCGATGATCATCCCGTTACTTCTGGGAGAAACTCCTCCCCAGATCCCCCACTATCTTCCTCACACCAGTTTGTCGATGGGCGTGAACAACCTGCGACACTAGATGTGTATTCACCAGATCGATTAGCTGGTGAGTTGTTTTTTCTAGACAATTCACTGCTATTCACTGCTGAGGAATTATCCAGAGCTCCGGCTGAAGTTCTTGGTAGAAGCAGTCATGGAACACTATATAAAGCTACTCTCGATAGTGGACATATGCTCGCTGTTAAGTGGTTACGTGTCGGACTGGTCAAACATAAGAAGGAATTTGCCAAGGAAGTTAAAAAAATTGGATCAATGAGGCATAAAAGCATTGTTCCTTTACGAGCTTATTATTGGGGTCCCAGAGAACAAGAGCGGCTTCTTCTAGTTGACTATATTTTGGGAGATAGCTTAGCCTTACATCTTTACGAAACCACACCTCGAAGGTACTCTCGGCTGTCGTTCAGCCAGAGACTTAAAATTGCAGTGGAAGTCGCTCGCTGTCTGTTATATCTTCATGATAGGGGCCTCCCCCATGGAAACTTAAAGCCAACAAATATAATCTTGGCAGGCCGTGATTTTGATGCCCGGCTCACTGACTATGGCCTTCATCGCTTGATGACACCAGCAGGCATTGCGGAGCAGATACTAAATCTAGGAGCACTTGGATATTGTGCTCCAGAACTGGCTTGTGCGGCAAAACCTGGTCCATCTTTCAAGGCTGACATTTATTCATTTGGGGTGATTTTAATGGAGCTTTTAACCAAAAGAAGTGCAGGCGACATAATATCAGGCCAATCTGGGGCTGTAGATCTCACCGATTGGGTTCGTCTATGCGATCAAGAAGGACGAAGAATGGACTGCATAGACAGAGATATCGTCGTCGGAGAAGAAGAGCCTACGAAAGCCATGGATGAACTGCTGGGTGTGTCCCTCAGGTGCATTCTCCCTGTAAATGAGAGGCCTAACATCAGACAAGTCTTGGATGATTTATGCGCTATATCTGTTTGA 5466 42.77 MATTSLPLPELVFVSPKRLLSTSSSRCSHYRIPLPRSCSFRVLFRTKVKAVREDGVIVDKRESELIKEANGYELGGNGAAYKENGDYRYNGWVNGGVTVVESETDSSNGSLMKYVNGNGVAATVVGEIQASESTEEGRKKRIEEIGKEEAWFKRSEQQHTEVSVAPGGRWNRFKTYSTIQRTLEIWGFVFTFIIKAWLNSQKFTYRGGMTEEKQVSRRKILAKWLKESILRLGPTFIKIGQQFSTRVDILPQEYVDQLSELQDQVPPFPSETAISIVEEELGGPLDNIFDWFDREPIAAASLGQVHRARLKGQEVVVKVQRPSLKELFDIDLKNLRVIAEYLQKFDPKSDGAKRDWVAIYDECANVLYQEIDYTKEAANAEQFANNFKNLNYVKVPSIFWDYTTPQVLTMEYVPGIKINKIKALDQLGIDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISSNIREGLLETFYGVYEKDPDKVLQAMIQMGVLVPTGDMTAVRRTAQFFLNSFEERLAAQRREREMATAELGFKKPLTKEEKLMKKKERLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYALELLKFREAGVEVAVKDFRKRWDRQSRAFYNLFRQAERVEKLAEVIQRLEQGDLKLRVRALESERAFQRVATVQKTLGNAIAAGSLINLATILYINSIRMPATIAYICCAFFGFQVLIAKLDPQGNGLAFLVPLSNASINKMKGAEGKQGLDEGKLMRKRASDSELNCLLEFKKGIQKDPHNSLQGKWDLAFVSNSDGCPLSWTGVSCDENGNVSAIVLDHLGLGGELKFQTLIGLKSLKNLSLSGNDFTGRLVPALGTLYSLQHLDLSFNRFYGPIPARINDLYNLNYLNFSVNHFTGGFPVGTLNLNQLKVLDLHSNRLYGNIGLLVSQLRNVEHVDLSDNEFYGGVSVGSGNISSLANTLKNFNVSFNRLNGGFFDADSLMLFRNLVLLDMGHNQIIGELPSFGALPNLRILRLGNNLLSGLVPGELLNRSLQLEELDLSGNAFTGKESLCLTISPLFMVPWRLIDCSILHVNSSTLKFLDLSSNALSGDISIMQNWEAKFEVLDLSSNKFSGSFPNSTSFFEGLKVLNVRNNFLVGPLPFTLGSSPSIYAVDFSLNALSGTIPASFLSSVTLISLNLSGNRFTGPIPLQGSSVSELLVKPSDPPMEYLDLSNNSLTGGISAEIDKLVRLKLLNLAKNELSGSLPDQLNRLSNLEYLDLSNNKFTGKIPDMLPNLLVFNVSYNDLSGDVPENLRNFPISSFRPGNGKLSLPEDIGPQNTIPNNFSEPGRHRTPKANIQIAIILASVGAVVMIVFLLLAYHRAQLKDFHGRSIFSSQGAERDIKIEHFGPSLFKFQPNNQPPPTSSSLSNDHLLTSTSRSLSGQAEFLSEISEHVLPGGAATSSSMIIPNLLDDHPVTSGRNSSPDPPLSSSHQFVDGREQPATLDVYSPDRLAGELFFLDNSLLFTAEELSRAPAEVLGRSSHGTLYKATLDSGHMLAVKWLRVGLVKHKKEFAKEVKKIGSMRHKSIVPLRAYYWGPREQERLLLVDYILGDSLALHLYETTPRRYSRLSFSQRLKIAVEVARCLLYLHDRGLPHGNLKPTNIILAGRDFDARLTDYGLHRLMTPAGIAEQILNLGALGYCAPELACAAKPGPSFKADIYSFGVILMELLTKRSAGDIISGQSGAVDLTDWVRLCDQEGRRMDCIDRDIVVGEEEPTKAMDELLGVSLRCILPVNERPNIRQVLDDLCAISV 1821
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2307932 2326676 + CmoCh07G005080.1 Cmo07g00508 385816

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g00508 1821 Coils Coil 532 552 - -
Cmo07g00508 1821 Pfam Leucine Rich Repeat 1281 1303 IPR001611 GO:0005515
Cmo07g00508 1821 PANTHER OS07G0626500 PROTEIN 785 1817 - -
Cmo07g00508 1821 MobiDBLite consensus disorder prediction 1420 1440 - -
Cmo07g00508 1821 Gene3D Transferase(Phosphotransferase) domain 1 346 497 - -
Cmo07g00508 1821 SUPERFAMILY Protein kinase-like (PK-like) 262 504 IPR011009 -
Cmo07g00508 1821 SMART LRR_typ_2 1279 1303 IPR003591 -
Cmo07g00508 1821 SMART LRR_typ_2 885 909 IPR003591 -
Cmo07g00508 1821 SMART LRR_typ_2 1034 1057 IPR003591 -
Cmo07g00508 1821 Pfam ABC1 atypical kinase-like domain 260 508 IPR004147 -
Cmo07g00508 1821 ProSiteProfiles Leucine-rich repeat profile. 1281 1304 IPR001611 GO:0005515
Cmo07g00508 1821 SUPERFAMILY L domain-like 792 1078 - -
Cmo07g00508 1821 MobiDBLite consensus disorder prediction 1479 1502 - -
Cmo07g00508 1821 Gene3D Ribonuclease Inhibitor 789 953 IPR032675 -
Cmo07g00508 1821 PANTHER OS07G0626500 PROTEIN 785 1817 - -
Cmo07g00508 1821 SUPERFAMILY L domain-like 1086 1325 - -
Cmo07g00508 1821 SUPERFAMILY Protein kinase-like (PK-like) 1543 1816 IPR011009 -
Cmo07g00508 1821 Pfam Leucine rich repeat N-terminal domain 788 834 IPR013210 -
Cmo07g00508 1821 Pfam Protein kinase domain 1544 1744 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo07g00508 1821 MobiDBLite consensus disorder prediction 1418 1440 - -
Cmo07g00508 1821 Gene3D Ribonuclease Inhibitor 1093 1340 IPR032675 -
Cmo07g00508 1821 MobiDBLite consensus disorder prediction 1337 1356 - -
Cmo07g00508 1821 Gene3D Phosphorylase Kinase; domain 1 1525 1617 - -
Cmo07g00508 1821 MobiDBLite consensus disorder prediction 1483 1502 - -
Cmo07g00508 1821 ProSiteProfiles Protein kinase domain profile. 1540 1821 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo07g00508 1821 Gene3D Ribonuclease Inhibitor 954 1085 IPR032675 -
Cmo07g00508 1821 CDD ABC1_ADCK3-like 261 509 - -
Cmo07g00508 1821 Gene3D Transferase(Phosphotransferase) domain 1 1620 1821 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g00508 - - - csv:101215683 1738.39
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00239 Cmo-Chr2:1123519 Cmo07g00508 Cmo-Chr7:2307932 5.89E-136 dispersed
Cmo07g00508 Cmo-Chr7:2307932 Cmo13g00517 Cmo-Chr13:6063491 0 dispersed
Cmo09g00534 Cmo-Chr9:2525735 Cmo07g00508 Cmo-Chr7:2307932 1.42E-42 dispersed
Cmo11g00817 Cmo-Chr11:4052000 Cmo07g00508 Cmo-Chr7:2307932 3.67E-08 dispersed
Cmo12g00328 Cmo-Chr12:2043155 Cmo07g00508 Cmo-Chr7:2307932 4.46E-64 dispersed
Cmo13g00814 Cmo-Chr13:7642453 Cmo07g00508 Cmo-Chr7:2307932 2.40E-37 dispersed
Cmo01g00421 Cmo-Chr1:2063082 Cmo07g00508 Cmo-Chr7:2307932 3.68E-51 transposed
Cmo03g00810 Cmo-Chr3:6553277 Cmo07g00508 Cmo-Chr7:2307932 0 transposed
Cmo04g01121 Cmo-Chr4:5727942 Cmo07g00508 Cmo-Chr7:2307932 4.53E-42 transposed
Cmo04g01435 Cmo-Chr4:7318938 Cmo07g00508 Cmo-Chr7:2307932 3.93E-57 transposed
Cmo04g02029 Cmo-Chr4:10919511 Cmo07g00508 Cmo-Chr7:2307932 3.12E-25 transposed
Cmo04g03029 Cmo-Chr4:21254706 Cmo07g00508 Cmo-Chr7:2307932 1.41E-43 transposed
Cmo05g00660 Cmo-Chr5:3336549 Cmo07g00508 Cmo-Chr7:2307932 6.82E-62 transposed
Cmo11g01266 Cmo-Chr11:8081129 Cmo07g00508 Cmo-Chr7:2307932 5.05E-78 transposed
Cmo03g00808 Cmo-Chr3:6541066 Cmo07g00508 Cmo-Chr7:2307932 7.89E-37 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g877 . . . . . Bpe13g00456 . Bma15g01028 . . . Cma07g00510 . Car07g00446 . . . . . . . . . . . . . . . . . . . . Cone3ag0624 . . . . . . . . . . . . . . Cmo07g00508 . . . Car05g00768 . . Bhi10g02053 Tan05g1355 . . Hepe10g1418 . . . . . . . . . . Csa04g00525 . Cme02g00859
Vvi7g1137 . . . . . . . . . Cmo07g00508 . . . . Sed14g1089 Cpe19g00791 . Bhi03g01256 Tan03g1945 Cmetu10g0647 . Hepe04g1480 . . . . . . . . . . . . . . . . Cme08g00817 . . Bda11g01879 Bda14g01020 . . . . . . . Cma03g00776 . Car03g00706 Car07g00447 Cpe10g00587 . . . . . . . . . . . . . . . . . Chy02g00677 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005789 3 1 2 0 1 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74460 PF00069 Pkinase 5.20E-26 CL0016 Cmo PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo07g00508 Cmo_Chr07 FPKM 19.059732 19.036983 58.343563 59.573853 24.498186 25.651209 26.895966 35.352051 38.688129 35.982395