Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g00539 ATGGATAGGTTTAGTAGCTTACCAGATCTTGCTGAATTAGGTAACTTGTTTGAACTAGTTCTTTTGAGATTCTACTCTTGTCGTAGGCAAATTGAGAGTGTGCATAATATTAACATGAGTTATGCATACCATTTTAGTGATGCGTTTGGCGATTGCATTGGCTTGGTTTTTACGCAGACAATTGAGAGGAAGGCCCACGCGTTGGTGTCTGTGTTTGACTCTACCAAATTAAATGGGTATTGTATTGAATTGCGTGATCAACCCAAATTCCTTTCCCTGCACCTCTCCCTCTCAAATTCTGATACATCCCCCAATTCTAATTCTAATTCTAAGTCTCCGCGCCGCAATGCCATTTTGTCGTTATGTTCCACGTCCCTAGATGCTCACACGTGGATGCATTTCATTGAGAAGTGCGCCTCGAATCACTTCTGGGTGATTCAGGTTCGTTGTTTTCTTGTTCTGGTTTCCGGAAGTCTTCTAGTTTCTTTATTAGACATGGCAGCAGCTTTAGATTTTTGCACTGGAATTTCAGCGCCGGTTTACTCTTCGGATCCTTTTTGCGAAGAGTTAATGAAAGCACTTCAACCTTTTATGAAGAGTGCTGTTTCAACCTCTTCTTCTTCTTCTGTTTCTTATCAGCCTAATGTGAACCCTGATTTTTGCTCCCCGTCGAGCATCCGCTTGTTTCCTCAAGCGTGTTCGGGAATTGAACAAATGGGTCTTGAGCAATCGGGTCCAATCGGGCTAAACAATCCCACCCCTTCACAAGTTCTACAAATTCAAGCTCAAATCCAACTACCCTCACAAACTATGTCTTCCTTCCCTTCTTCTTTTTCATTCCAGTCTCGAGTTTCGTCCCAATACCATAGCGTCCTTGCCCCCAAATCCATTCCGATGAAGCACACCGGCTCTCCGACTAAGCCCACTAGAGTCTACAGGGGAATCCGGCAGCGCCACTGGGGAAAATGGGTCGCCGAAATCAGACTCCCCAAGAACCGAACCAGACTCTGGCTTGGCACTTTCGACACGGCCGAGGAGGCGGCTTTAGCCTATGACAAAGCTGCTTACAAGCTCCGTGGCGACTTGGCTCGCCTCAATTTTCCACATCTCAAACATCAATTCGGGGACTTCGAGCCTCTTCACTCTTCTGTGGACGCGAAACTTCAAGCAATTTGTCAAAGCTTGAAACAGGGGGAAACAGAGAAGCCACCGAGCTCTCCACCTCCATCTGAATCAAACTCAGTGGTTAACAATTTTAAGGAAGCGGAATTAAAAATCGAAGCGGAGACTTCATCTTCATCTTCATCTTCATCTTCATGGTCATCTCCTTCGCTGTGTGAAGATTTCTCCACCGGGTCCTCCCCTGAGTCGAGTATTAGCTTCTTGGATTTCTCAGATTCGCAATGGGGTGAAGGAGAAGCATTCTGTTTGGAAAAGTATCCTTCCGTTGAAATTGATTGGGCAGCTCTGAACCAGCTGGGCGAATCAGAAATGTTTAATTAG 1503 45.51 MDRFSSLPDLAELGNLFELVLLRFYSCRRQIESVHNINMSYAYHFSDAFGDCIGLVFTQTIERKAHALVSVFDSTKLNGYCIELRDQPKFLSLHLSLSNSDTSPNSNSNSKSPRRNAILSLCSTSLDAHTWMHFIEKCASNHFWVIQVRCFLVLVSGSLLVSLLDMAAALDFCTGISAPVYSSDPFCEELMKALQPFMKSAVSTSSSSSVSYQPNVNPDFCSPSSIRLFPQACSGIEQMGLEQSGPIGLNNPTPSQVLQIQAQIQLPSQTMSSFPSSFSFQSRVSSQYHSVLAPKSIPMKHTGSPTKPTRVYRGIRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDLARLNFPHLKHQFGDFEPLHSSVDAKLQAICQSLKQGETEKPPSSPPPSESNSVVNNFKEAELKIEAETSSSSSSSSSWSSPSLCEDFSTGSSPESSISFLDFSDSQWGEGEAFCLEKYPSVEIDWAALNQLGESEMFN 500
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2427365 2430545 + CmoCh07G005390.1 Cmo07g00539 385847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g00539 500 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 166 492 - -
Cmo07g00539 500 SMART rav1_2 311 374 IPR001471 GO:0003700|GO:0006355
Cmo07g00539 500 Pfam AP2 domain 311 360 IPR001471 GO:0003700|GO:0006355
Cmo07g00539 500 CDD AP2 312 370 IPR001471 GO:0003700|GO:0006355
Cmo07g00539 500 Gene3D AP2/ERF domain 311 369 IPR036955 GO:0003700|GO:0006355
Cmo07g00539 500 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF060-LIKE 166 492 - -
Cmo07g00539 500 ProSiteProfiles AP2/ERF domain profile. 311 368 IPR001471 GO:0003700|GO:0006355
Cmo07g00539 500 SUPERFAMILY DNA-binding domain 311 369 IPR016177 GO:0003677
Cmo07g00539 500 PRINTS Ethylene responsive element binding protein signature 312 323 IPR001471 GO:0003700|GO:0006355
Cmo07g00539 500 PRINTS Ethylene responsive element binding protein signature 334 350 IPR001471 GO:0003700|GO:0006355
Cmo07g00539 500 MobiDBLite consensus disorder prediction 396 415 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g00539 Cmo-Chr7:2427365 Cmo09g00639 Cmo-Chr9:3198397 2.51E-71 dispersed
Cmo03g00836 Cmo-Chr3:6662075 Cmo07g00539 Cmo-Chr7:2427365 3.53E-150 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10112 PF00847 AP2 6.10E-14 CL0081 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g00539 K09286 - csv:101211347 453.751