Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo07g00569 | ATGGATTTCGAAGATCAAGATGACCACGACGACGACATGGAGATGGCGGCGGCGGCGGCGGCAGCGAGTTACGACCCTTTGCAGGGTAACTCAGGTGGGCGAGTCAAAACCCCAACCAGTACGGACCCAAGTGGACAGAGGAAACCCAAGTACAGAGAGTGCTTAAAAAATCACGCGGTTGGCATTGGAGGTCACGCCCTTGACGGCTGCGGCGAATTTCTAGCAGCTGGAGCTGAAGGAACTCTCGACGCTCTTAAATGCGCCGCCTGCAACTGCCACCGCAACTTCCACCGCAAGGAGACGGATAACCTCAACGCCACCGCGGTTGGTGTTGGACTTGGAATCGCAGAGCCATTTCTATTGCCACACCCGAGTCAGTTCTCTCCTTACTACCGAACCCCAACTGGGTACCTCCACGTGGCACCACACCACAGACCTCTAGCTCTCCCCTCCACCTCCGGTGGCGGTGGTGGTGGCACCCTGAGCAGGGAGGAGCAGGAGGACATGTCGAATCCGAGCGGTGGCGGGGGAGGGAGTAGCAGCTTAGGGAGGAAGAGATTTAGAACAAAGTTCACACAAGAACAGAAGGACAGAATGCTGGGACTGGCGGAGACATTGGGGTGGAGGATCCAAAAACACGATGAGGCGTTGGTGCAGCAGTTCTGTAACGAGACCGGAGTGAAGCGGCACGTGCTTAAAGTGTGGATGCATAATAACAAGAACACTCTTGGTAAGAAACCCTAG | 744 | 55.91 | MDFEDQDDHDDDMEMAAAAAAASYDPLQGNSGGRVKTPTSTDPSGQRKPKYRECLKNHAVGIGGHALDGCGEFLAAGAEGTLDALKCAACNCHRNFHRKETDNLNATAVGVGLGIAEPFLLPHPSQFSPYYRTPTGYLHVAPHHRPLALPSTSGGGGGGTLSREEQEDMSNPSGGGGGSSSLGRKRFRTKFTQEQKDRMLGLAETLGWRIQKHDEALVQQFCNETGVKRHVLKVWMHNNKNTLGKKP | 247 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 2559410 | 2560153 | + | CmoCh07G005690.1 | Cmo07g00569 | 385877 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo07g00569 | 247 | MobiDBLite | consensus disorder prediction | 30 | 45 | - | - | |
Cmo07g00569 | 247 | PANTHER | ZINC-FINGER HOMEODOMAIN PROTEIN 1 | 35 | 246 | - | - | |
Cmo07g00569 | 247 | TIGRFAM | ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain | 50 | 100 | IPR006456 | - | |
Cmo07g00569 | 247 | ProSiteProfiles | Zinc-finger ZF-HD dimerization-type profile. | 51 | 100 | IPR006456 | - | |
Cmo07g00569 | 247 | PANTHER | ZINC-FINGER HOMEODOMAIN PROTEIN 2 | 35 | 246 | - | - | |
Cmo07g00569 | 247 | Pfam | ZF-HD protein dimerisation region | 50 | 101 | IPR006456 | - | |
Cmo07g00569 | 247 | MobiDBLite | consensus disorder prediction | 145 | 185 | - | - | |
Cmo07g00569 | 247 | MobiDBLite | consensus disorder prediction | 155 | 178 | - | - | |
Cmo07g00569 | 247 | SUPERFAMILY | Homeodomain-like | 169 | 245 | IPR009057 | - | |
Cmo07g00569 | 247 | MobiDBLite | consensus disorder prediction | 1 | 49 | - | - | |
Cmo07g00569 | 247 | Gene3D | - | 168 | 244 | - | - | |
Cmo07g00569 | 247 | TIGRFAM | homeo_ZF_HD: homeobox domain, ZF-HD class | 184 | 241 | IPR006455 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo06g00007 | Cmo-Chr6:34618 | Cmo07g00569 | Cmo-Chr7:2559410 | 6.75E-54 | dispersed | |
Cmo07g00483 | Cmo-Chr7:2202787 | Cmo07g00569 | Cmo-Chr7:2559410 | 5.12E-54 | dispersed | |
Cmo07g00569 | Cmo-Chr7:2559410 | Cmo12g00418 | Cmo-Chr12:2570610 | 1.70E-67 | dispersed | |
Cmo04g00894 | Cmo-Chr4:4510277 | Cmo07g00569 | Cmo-Chr7:2559410 | 9.26E-70 | transposed | |
Cmo03g00874 | Cmo-Chr3:6821712 | Cmo07g00569 | Cmo-Chr7:2559410 | 3.82E-126 | wgd | |
Cmo05g00555 | Cmo-Chr5:2677874 | Cmo07g00569 | Cmo-Chr7:2559410 | 3.81E-67 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
10115 | PF04770 | ZF-HD_dimer | 1.00E-28 | No_clan | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo07g00569 | - | - | csv:101204784 | 384.03 |