Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g00569 ATGGATTTCGAAGATCAAGATGACCACGACGACGACATGGAGATGGCGGCGGCGGCGGCGGCAGCGAGTTACGACCCTTTGCAGGGTAACTCAGGTGGGCGAGTCAAAACCCCAACCAGTACGGACCCAAGTGGACAGAGGAAACCCAAGTACAGAGAGTGCTTAAAAAATCACGCGGTTGGCATTGGAGGTCACGCCCTTGACGGCTGCGGCGAATTTCTAGCAGCTGGAGCTGAAGGAACTCTCGACGCTCTTAAATGCGCCGCCTGCAACTGCCACCGCAACTTCCACCGCAAGGAGACGGATAACCTCAACGCCACCGCGGTTGGTGTTGGACTTGGAATCGCAGAGCCATTTCTATTGCCACACCCGAGTCAGTTCTCTCCTTACTACCGAACCCCAACTGGGTACCTCCACGTGGCACCACACCACAGACCTCTAGCTCTCCCCTCCACCTCCGGTGGCGGTGGTGGTGGCACCCTGAGCAGGGAGGAGCAGGAGGACATGTCGAATCCGAGCGGTGGCGGGGGAGGGAGTAGCAGCTTAGGGAGGAAGAGATTTAGAACAAAGTTCACACAAGAACAGAAGGACAGAATGCTGGGACTGGCGGAGACATTGGGGTGGAGGATCCAAAAACACGATGAGGCGTTGGTGCAGCAGTTCTGTAACGAGACCGGAGTGAAGCGGCACGTGCTTAAAGTGTGGATGCATAATAACAAGAACACTCTTGGTAAGAAACCCTAG 744 55.91 MDFEDQDDHDDDMEMAAAAAAASYDPLQGNSGGRVKTPTSTDPSGQRKPKYRECLKNHAVGIGGHALDGCGEFLAAGAEGTLDALKCAACNCHRNFHRKETDNLNATAVGVGLGIAEPFLLPHPSQFSPYYRTPTGYLHVAPHHRPLALPSTSGGGGGGTLSREEQEDMSNPSGGGGGSSSLGRKRFRTKFTQEQKDRMLGLAETLGWRIQKHDEALVQQFCNETGVKRHVLKVWMHNNKNTLGKKP 247
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2559410 2560153 + CmoCh07G005690.1 Cmo07g00569 385877
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g00569 247 MobiDBLite consensus disorder prediction 30 45 - -
Cmo07g00569 247 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 1 35 246 - -
Cmo07g00569 247 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 50 100 IPR006456 -
Cmo07g00569 247 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 51 100 IPR006456 -
Cmo07g00569 247 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 35 246 - -
Cmo07g00569 247 Pfam ZF-HD protein dimerisation region 50 101 IPR006456 -
Cmo07g00569 247 MobiDBLite consensus disorder prediction 145 185 - -
Cmo07g00569 247 MobiDBLite consensus disorder prediction 155 178 - -
Cmo07g00569 247 SUPERFAMILY Homeodomain-like 169 245 IPR009057 -
Cmo07g00569 247 MobiDBLite consensus disorder prediction 1 49 - -
Cmo07g00569 247 Gene3D - 168 244 - -
Cmo07g00569 247 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 184 241 IPR006455 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00007 Cmo-Chr6:34618 Cmo07g00569 Cmo-Chr7:2559410 6.75E-54 dispersed
Cmo07g00483 Cmo-Chr7:2202787 Cmo07g00569 Cmo-Chr7:2559410 5.12E-54 dispersed
Cmo07g00569 Cmo-Chr7:2559410 Cmo12g00418 Cmo-Chr12:2570610 1.70E-67 dispersed
Cmo04g00894 Cmo-Chr4:4510277 Cmo07g00569 Cmo-Chr7:2559410 9.26E-70 transposed
Cmo03g00874 Cmo-Chr3:6821712 Cmo07g00569 Cmo-Chr7:2559410 3.82E-126 wgd
Cmo05g00555 Cmo-Chr5:2677874 Cmo07g00569 Cmo-Chr7:2559410 3.81E-67 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10115 PF04770 ZF-HD_dimer 1.00E-28 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g00569 - - csv:101204784 384.03