Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g00576 ATGGCGAAGGAGAAAATCCAGATCAGGAAGATCGATAACGCGACGGCGAGGCAGGTCACCTTCTCTAAGCGCCGGAGGGGACTTTTTAAGAAAGCCAAAGAGCTATCCGTTTTATGCGACGCTGATGTTGCCCTCATTATCTTCTCCACCACCGGGAAGCTGTTTGAGTACTCCAGCTCAAGTATGAAGGGAATTATAGAAAGACATAACTTGCACTCTAAGAACCTCCAGAAATTGGAACAACCATCCCTTGAACTACAGCTCGTTGAAAACAGCAATTACACTCGATTAAACAAGGAAATTGCAGAGAAAACTCATCAGCTAAGGCAAATGAGGGGCGAAGAGCTGCAAACGTTGAATATTGATGAACTGCAGCAGCTAGAGAAGTCACTGGAGTTTGGATTGAGCCGTGTAATGGAGAAAAAGGGCGAAAAGATCATGAAGGAGATCACTGATCTTCAAAGAAAGGTCAAGTACCATCTTCCAATAATAAGGCTATTGAGCAAAGGACCCATATTAGTAGAATCTATTGCAACCTTCCTATAA 546 43.59 MAKEKIQIRKIDNATARQVTFSKRRRGLFKKAKELSVLCDADVALIIFSTTGKLFEYSSSSMKGIIERHNLHSKNLQKLEQPSLELQLVENSNYTRLNKEIAEKTHQLRQMRGEELQTLNIDELQQLEKSLEFGLSRVMEKKGEKIMKEITDLQRKVKYHLPIIRLLSKGPILVESIATFL 181
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2610497 2613883 + CmoCh07G005760.1 Cmo07g00576 385884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g00576 181 PANTHER MADS-BOX PROTEIN SVP ISOFORM X1 1 157 - -
Cmo07g00576 181 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cmo07g00576 181 ProSiteProfiles K-box domain profile. 87 181 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cmo07g00576 181 SUPERFAMILY SRF-like 3 85 IPR036879 GO:0003677|GO:0046983
Cmo07g00576 181 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 157 - -
Cmo07g00576 181 Pfam K-box region 92 158 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cmo07g00576 181 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Cmo07g00576 181 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cmo07g00576 181 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cmo07g00576 181 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cmo07g00576 181 Coils Coil 94 114 - -
Cmo07g00576 181 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Cmo07g00576 181 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cmo07g00576 181 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g00576 Cmo-Chr7:2610497 Cmo19g00492 Cmo-Chr19:5857286 4.51E-56 dispersed
Cmo12g00151 Cmo-Chr12:982096 Cmo07g00576 Cmo-Chr7:2610497 3.24E-69 wgd
Cmo03g00881 Cmo-Chr3:6865695 Cmo07g00576 Cmo-Chr7:2610497 6.34E-103 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10117 PF01486 K-box 1.10E-13 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g00576 - - csv:101203152 285.804