Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g00588 ATGGAGAAGAAAGACAGAAGAAGAAGCACACAGCCATGGATTTGGAAGCTTGAGCTCTCATCAATGGCGCTCCTTCTCTTATTCATCTTCACTTTATCGCTCGCCAAAGCACTGCCACAACAGCAGCATTCGTCCCCGCCGTTGGCACCCGACGTAGCCCTACAATGGCAGATTCGTGGACAGGTGGCAATTGACAATGGGTTGATTCGAGTCACTTTTTCTCACGAAGGCAACGTTATTGGCATAAAATACAATAACATGGATAACATACTTGATTTTCACAATGCATACAATAACAGAGCATATTTGGATTTGGCTTGGAACACCCCAAATCAGACAAGTATTATTGAAAGAGTAAAGGCAACCAATGTGAAGGTGGTTACAGCCACCGGTGACCAAATAGAGCTTTCATTCACCAGATATTGGAATTCTTCCGACCCTTTTTCAGTCCCTTCGAACATAGATCAGAGGTATATTTTGAGACGGGGCGATTCTGGATATTATACATATAGCATATTTGAACGGCTGGAAAATTGGCCTGAACTTGGAGTGGACGAGATCAGAATCGCCTACAAAGCCCTAAGAGACAAATTTCATTACATGGCGATATCGGACGATCGACAGAGGATCATGCCCACGCAACTGGACCGGATGACTGGGCAGCGTCTCGCTTACGCGGAGGCGGTTCTCATAACCCAACCCACCAACCCGGACCTCAAAGGAGAGGTGGACGATAAGTACCAGTACTCGCAAGAGAATATGGAGAACAGGGTGCATGGATGGGTGTCTAGGGACCCAAACGTGGGGTTCTGGATGATCACGGCCAGTGATGAGTTTCGTTCGGGGGGGCCGGTCAAGCAAGAACTCACATCCCACGTTGGCCCCACAACTCTTACGGTGTTCAAGAGTAATCATTATGCGGGTAAGGATGCTTCGATGAGATTTAAGGAGGGAGAAGCATGGAAAAAGGTTTTGGGCCCGGTTTTCATTTATCTAAACTCGGACCCGACCGGCACTGAAACCCCGGGTTCACTATGGGAAGATGCTAAAAACCAGATGAGGATAGAGAGGGGGAAGTGGCCGTATGGGTTCGTCGAGTCGAAAGAATTTCCATGCTCAGAGGAAAGAGGCAGCGTTAGTGGCCGATTAATGGTCCGAGATAGATTCGCCAAGAAGGGGCAAATGTGGGCCGATTCTGCGTTTGTGGGCCTCGCAGCTCCCGGGGAAGTGGGGTCTTGGCAAACTGAGAGCAAGGGGTATCAATTTTGGACACGAGCGGATCAAGATGGAAATTTCTTCATTCAAAATATAAGGCCAGGAAACTACAATCTCTACGCATGGGTACCCGGCGTCATTGGCGATTACAAGTACGACGGCGACGTCACCGTCACGGCGGCGAGTTCCACTAACCTGAGTGTGCTGATTTACGACCCACCACGACGAGGCCCAACTCTGTGGGAGATCGGCATCCCTGACCGGAAGGCAGCCGAGTTCTACATACCGGATCCTGAACCCACCTTAATGAGCCACTTTTACAACAACACCAAAATTCAAAACCCAGATAAGTTCCGGCAGTACGGTATCTGGGCACGCTACGCTGATTTGTACCCTGATCAGGATCTGGTGTACAACGTTGACACGGATGACTACCGCCGCCATTGGTTTTACGCTCACGTAACCAGAGCCACTGAATCCGGGGACTACCAAGCAACTACGTGGCAGATTGTGTTTCGTCTTCGAGGACCCATAAAGACCGGAACCTATACGCTCCGGTTGGCGTTGGCCTCCAGTAGTCATGGGGTGGTCGATGTCCGGTTCAACAACCCGATGGCCAGACGACCTGCTTTCACGACTGGGTATTGGAATGCAGGAAGAGATAACGCAATCGCAAGACATGGCATTCATGGGCTTTATCGGTTATTCAACTTCGATGTTCCCAGTTATTATTTGGTCGAAGGAGACAACGTAATCTATCTTACACAGAGAAGACATGCAGGTCCTTTCCAAGGAGTAATGTACGACTACATACGATTTGAAGGTGTAGAGTAG 2049 49.24 MEKKDRRRSTQPWIWKLELSSMALLLLFIFTLSLAKALPQQQHSSPPLAPDVALQWQIRGQVAIDNGLIRVTFSHEGNVIGIKYNNMDNILDFHNAYNNRAYLDLAWNTPNQTSIIERVKATNVKVVTATGDQIELSFTRYWNSSDPFSVPSNIDQRYILRRGDSGYYTYSIFERLENWPELGVDEIRIAYKALRDKFHYMAISDDRQRIMPTQLDRMTGQRLAYAEAVLITQPTNPDLKGEVDDKYQYSQENMENRVHGWVSRDPNVGFWMITASDEFRSGGPVKQELTSHVGPTTLTVFKSNHYAGKDASMRFKEGEAWKKVLGPVFIYLNSDPTGTETPGSLWEDAKNQMRIERGKWPYGFVESKEFPCSEERGSVSGRLMVRDRFAKKGQMWADSAFVGLAAPGEVGSWQTESKGYQFWTRADQDGNFFIQNIRPGNYNLYAWVPGVIGDYKYDGDVTVTAASSTNLSVLIYDPPRRGPTLWEIGIPDRKAAEFYIPDPEPTLMSHFYNNTKIQNPDKFRQYGIWARYADLYPDQDLVYNVDTDDYRRHWFYAHVTRATESGDYQATTWQIVFRLRGPIKTGTYTLRLALASSSHGVVDVRFNNPMARRPAFTTGYWNAGRDNAIARHGIHGLYRLFNFDVPSYYLVEGDNVIYLTQRRHAGPFQGVMYDYIRFEGVE 682
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2657026 2660326 - CmoCh07G005880.1 Cmo07g00588 385896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g00588 682 CDD RGL4_C 486 679 - -
Cmo07g00588 682 SUPERFAMILY Galactose mutarotase-like 150 337 IPR011013 GO:0003824|GO:0005975|GO:0030246
Cmo07g00588 682 CDD RGL4_M 375 474 IPR029413 -
Cmo07g00588 682 Pfam Polysaccharide lyase family 4, domain II 398 471 IPR029413 -
Cmo07g00588 682 CDD RGL4_N 61 337 - -
Cmo07g00588 682 Gene3D - 482 678 - -
Cmo07g00588 682 SUPERFAMILY Galactose-binding domain-like 482 679 IPR008979 -
Cmo07g00588 682 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 57 680 - -
Cmo07g00588 682 Pfam Rhamnogalacturonate lyase family 50 243 IPR010325 -
Cmo07g00588 682 Pfam Polysaccharide lyase family 4, domain III 484 677 IPR029411 -
Cmo07g00588 682 Gene3D - 60 344 IPR014718 GO:0030246
Cmo07g00588 682 SUPERFAMILY Starch-binding domain-like 374 474 IPR013784 GO:0030246
Cmo07g00588 682 Gene3D - 372 474 - -
Cmo07g00588 682 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 57 680 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g00167 Cmo-Chr12:1101111 Cmo07g00588 Cmo-Chr7:2657026 0 wgd
Cmo03g00891 Cmo-Chr3:6907147 Cmo07g00588 Cmo-Chr7:2657026 0 wgd
Cmo07g00588 Cmo-Chr7:2657026 Cmo09g00585 Cmo-Chr9:2873512 2.74E-173 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g00588 K18195 - csv:101206696 959.518