Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmo07g00598 | ATGGAGCTCACTCAGTATGGTTTCTTAGAGGAGTTATTAGCTTCAACGCCTTGGACCTCCTCCTCCTCCTCCTCCTCCTATTCAAATGGGTTCAATGATTTCTTCCCAAATGGCTGCAATTTCAGTTCTTTTGATGAAATTCCCCAAATGGGTACCTCAATTTCACCCCATTTTCCCGGTTTTCAAACGCCTACTGACTTTTCTTTCGCCGACCAACACCTCTACGGCAGTTTTCTTGAAGGGTTTGCATTGCCGGAGGTGGATTCTTCATCGTACACTAAGAACAACGAAACCCCACCATTTGTTTCGGTAGAGGAGATTAGTAATAAGAACAGTGGTTTCCCTCCGACAGCGATGGAGGAGGAAGAATTTGGTTTTATGGAGTGTGAAGCGGCACCAAATGTTTGCAAACAGGAAATGGAGGTAATGGGTGGGCGTGAAAGTAATGATTCTAAAATGGGTGTGGCAGAATTGGGGAAAAGAAGAAGCAACAAGGCTAAGAAGCTTGATGGACAGCCTTCGAAGAATTTAATGGCAGAAAGAAGAAGAAGGAGACGGTTGAATGATCGGCTTTCAATGCTTAGAGCAATAGTTCCTAAAATAAGCAAGATGGATAGAACGTCTATTCTTGGAGACACGATCGATTACGTGAAAGAGCTGCTTGAAAGAATCAAGAACTTGAAAGAAGAAGATTCAAATCATGCAAGTCTAAATGGGATCTCCAAGGAAAGGAAGTCCAATGAAGTTCTGTTCGACGTTGAAAGGAAGGAGAGGGAGACTCGGATCGGCATTTGCTGTACGACGAGGCCAGGATTATTGCTATCCACCGTCAACACATTAGAGGCATTGGGCCTTGAGATTCAGCAGTGTGTTATTAGCTGCTTCAATGATTTCTCAATGCAAGCTTCTTGTTCAGAGGGAAGTTCTCAGAAAGCAGTGCCAAGTTCTGATGATATAAAGGAGGCATTGTTCAGAAATGCAGGCTATGGAGGGAAGTGCTTGTAG | 1005 | 43.88 | MELTQYGFLEELLASTPWTSSSSSSSYSNGFNDFFPNGCNFSSFDEIPQMGTSISPHFPGFQTPTDFSFADQHLYGSFLEGFALPEVDSSSYTKNNETPPFVSVEEISNKNSGFPPTAMEEEEFGFMECEAAPNVCKQEMEVMGGRESNDSKMGVAELGKRRSNKAKKLDGQPSKNLMAERRRRRRLNDRLSMLRAIVPKISKMDRTSILGDTIDYVKELLERIKNLKEEDSNHASLNGISKERKSNEVLFDVERKERETRIGICCTTRPGLLLSTVNTLEALGLEIQQCVISCFNDFSMQASCSEGSSQKAVPSSDDIKEALFRNAGYGGKCL | 334 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 2685687 | 2687209 | + | CmoCh07G005980.1 | Cmo07g00598 | 385906 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmo07g00598 | 334 | Coils | Coil | 210 | 230 | - | - | |
| Cmo07g00598 | 334 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 171 | 220 | IPR011598 | GO:0046983 | |
| Cmo07g00598 | 334 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 174 | 231 | IPR036638 | GO:0046983 | |
| Cmo07g00598 | 334 | PANTHER | TRANSCRIPTION FACTOR SCREAM2-RELATED | 4 | 334 | - | - | |
| Cmo07g00598 | 334 | Pfam | Helix-loop-helix DNA-binding domain | 177 | 220 | IPR011598 | GO:0046983 | |
| Cmo07g00598 | 334 | PANTHER | HELIX-LOOP-HELIX, PUTATIVE, EXPRESSED-RELATED | 4 | 334 | - | - | |
| Cmo07g00598 | 334 | SMART | finulus | 177 | 226 | IPR011598 | GO:0046983 | |
| Cmo07g00598 | 334 | Gene3D | - | 172 | 243 | IPR036638 | GO:0046983 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmo07g00598 | Cmo-Chr7:2685687 | Cmo18g00238 | Cmo-Chr18:1579409 | 1.67E-37 | dispersed | |
| Cmo12g00135 | Cmo-Chr12:844845 | Cmo07g00598 | Cmo-Chr7:2685687 | 6.23E-64 | wgd | |
| Cmo03g00895 | Cmo-Chr3:6930028 | Cmo07g00598 | Cmo-Chr7:2685687 | 0 | wgd | |
| Cmo05g00589 | Cmo-Chr5:2916192 | Cmo07g00598 | Cmo-Chr7:2685687 | 5.23E-48 | wgd | |
| Cmo07g00598 | Cmo-Chr7:2685687 | Cmo09g00594 | Cmo-Chr9:2937102 | 4.12E-73 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 10118 | PF00010 | HLH | 2.20E-09 | No_clan | Cmo | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmo07g00598 | - | - | cmax:111497242 | 637.876 |