Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g00598 ATGGAGCTCACTCAGTATGGTTTCTTAGAGGAGTTATTAGCTTCAACGCCTTGGACCTCCTCCTCCTCCTCCTCCTCCTATTCAAATGGGTTCAATGATTTCTTCCCAAATGGCTGCAATTTCAGTTCTTTTGATGAAATTCCCCAAATGGGTACCTCAATTTCACCCCATTTTCCCGGTTTTCAAACGCCTACTGACTTTTCTTTCGCCGACCAACACCTCTACGGCAGTTTTCTTGAAGGGTTTGCATTGCCGGAGGTGGATTCTTCATCGTACACTAAGAACAACGAAACCCCACCATTTGTTTCGGTAGAGGAGATTAGTAATAAGAACAGTGGTTTCCCTCCGACAGCGATGGAGGAGGAAGAATTTGGTTTTATGGAGTGTGAAGCGGCACCAAATGTTTGCAAACAGGAAATGGAGGTAATGGGTGGGCGTGAAAGTAATGATTCTAAAATGGGTGTGGCAGAATTGGGGAAAAGAAGAAGCAACAAGGCTAAGAAGCTTGATGGACAGCCTTCGAAGAATTTAATGGCAGAAAGAAGAAGAAGGAGACGGTTGAATGATCGGCTTTCAATGCTTAGAGCAATAGTTCCTAAAATAAGCAAGATGGATAGAACGTCTATTCTTGGAGACACGATCGATTACGTGAAAGAGCTGCTTGAAAGAATCAAGAACTTGAAAGAAGAAGATTCAAATCATGCAAGTCTAAATGGGATCTCCAAGGAAAGGAAGTCCAATGAAGTTCTGTTCGACGTTGAAAGGAAGGAGAGGGAGACTCGGATCGGCATTTGCTGTACGACGAGGCCAGGATTATTGCTATCCACCGTCAACACATTAGAGGCATTGGGCCTTGAGATTCAGCAGTGTGTTATTAGCTGCTTCAATGATTTCTCAATGCAAGCTTCTTGTTCAGAGGGAAGTTCTCAGAAAGCAGTGCCAAGTTCTGATGATATAAAGGAGGCATTGTTCAGAAATGCAGGCTATGGAGGGAAGTGCTTGTAG 1005 43.88 MELTQYGFLEELLASTPWTSSSSSSSYSNGFNDFFPNGCNFSSFDEIPQMGTSISPHFPGFQTPTDFSFADQHLYGSFLEGFALPEVDSSSYTKNNETPPFVSVEEISNKNSGFPPTAMEEEEFGFMECEAAPNVCKQEMEVMGGRESNDSKMGVAELGKRRSNKAKKLDGQPSKNLMAERRRRRRLNDRLSMLRAIVPKISKMDRTSILGDTIDYVKELLERIKNLKEEDSNHASLNGISKERKSNEVLFDVERKERETRIGICCTTRPGLLLSTVNTLEALGLEIQQCVISCFNDFSMQASCSEGSSQKAVPSSDDIKEALFRNAGYGGKCL 334
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
7 2685687 2687209 + CmoCh07G005980.1 Cmo07g00598 385906
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g00598 334 Coils Coil 210 230 - -
Cmo07g00598 334 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 171 220 IPR011598 GO:0046983
Cmo07g00598 334 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 174 231 IPR036638 GO:0046983
Cmo07g00598 334 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 4 334 - -
Cmo07g00598 334 Pfam Helix-loop-helix DNA-binding domain 177 220 IPR011598 GO:0046983
Cmo07g00598 334 PANTHER HELIX-LOOP-HELIX, PUTATIVE, EXPRESSED-RELATED 4 334 - -
Cmo07g00598 334 SMART finulus 177 226 IPR011598 GO:0046983
Cmo07g00598 334 Gene3D - 172 243 IPR036638 GO:0046983
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g00598 Cmo-Chr7:2685687 Cmo18g00238 Cmo-Chr18:1579409 1.67E-37 dispersed
Cmo12g00135 Cmo-Chr12:844845 Cmo07g00598 Cmo-Chr7:2685687 6.23E-64 wgd
Cmo03g00895 Cmo-Chr3:6930028 Cmo07g00598 Cmo-Chr7:2685687 0 wgd
Cmo05g00589 Cmo-Chr5:2916192 Cmo07g00598 Cmo-Chr7:2685687 5.23E-48 wgd
Cmo07g00598 Cmo-Chr7:2685687 Cmo09g00594 Cmo-Chr9:2937102 4.12E-73 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10118 PF00010 HLH 2.20E-09 No_clan Cmo TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g00598 - - cmax:111497242 637.876