Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g00616 ATGCGTCTTCTTCCTCTTCTTCTCCTTTGTCTTCTGCAACTTCACATTCACCATTGTTGTTCAGCTCGTGTTTCTGAGTATCGAGCTCTGCTCTCGCTTAGAACCTCCATTTCTGGTGACCCCAAATCCTCGCTCTCTTCGTGGAATGCTTCCACCAGTCACTGTACTTGGTTTGGGGTTACTTGCGATGTTCGTCGCCATGTCACTGCCCTTGACCTCTCTGGTCTCGGGCTTTCTGGTTCTCTTTCGCCTGATGTGGCCTATTTGAGGTTTCTTACTAATCTTTCTCTTGCGTCCAATGATTTCTCGGGTCCAATCCCGCCGGAGATTTCTTCCATTTCTTCTCTTCGGTTCCTGAACCTGTCTAATAATGTCTTCGATGGGTCGTTCCCTACGCAGCTTTCGCAGCTTCGGAATCTGCAGGTTCTTGATTTGTATAACAACAATATGACTGGGGATTTCCCCATTGTCGTTACTGAAATGATGAGCCTCCGCCATTTGCATTTGGGTGGAAATTTCTTCGCCGGAGCGATTCCGCCGGAAGTCGGTCGGATGGAGTCCTTGGAGTACTTTGCGGTTTCTGGTAACGAACTCGGCGGTTCCATACCGCCGGAAATCGGGAACTTGACGAATCTTCGTGAGCTTTACATTGGCTACTTCAACGCGTACGTCGGCGGGATTCCGGCTGAGATTGGGAATTTGTCGGAGTTGGTACGGTTGGACGCGGCCAACTGTGGACTCTCTGGTCGGATTCCACCGGAGCTCGGAAAGCTGAAGAACCTGGATACGCTGTTTCTTCAAGTAAATGGTCTATCTGGGCCATTGACGCCGGAGATTGGAGAGTTGAATGGCTTGAAATCGTTGGATTTGTCGAACAATATGCTTGTGGGTGAGATTCCCAGCTCGTTCTCCGATCTCAAGAACTTGACGCTGTTGAATCTGTTTAGAAACAAGCTTCATGGAGCGATTCCTTCCTTTATTGGGGACTTGCCAAAGCTGGAGGTGTTGCAGTTATGGGAGAATAATTTCACGGAAGCGATTCCACAGAACCTGGGCAAGAACGGAATGCTTCAGATTTTGGATCTTTCTTCCAACAAGCTCACCGGAAATCTTCCTCCCGATATGTGCTACGGTAATCGCCTTCAAACTCTCATCGCATTGAGCAATTTCTTGTTTGGTCCAATCCCAGAGTCGCTAGGCAAATGTGTTTCGCTTAATCGGATTCGTATGGGGGACAATTTTCTTAATGGATCTATCCCAAAGGGGCTTCTCAGTCTGCCGGACCTCTCTCAGGTTGAGTTACAGGACAATTACCTCTCCGGCGAGTTCCCTGTAACCGATTCAATCTCCGTCAATCTGGGCCAGATTAGTCTCTCGAACAATCGCCTCTCCGGGTCGATTCCACCCACTATCGGCAACTTCTCCGGCGTCCAGAAACTACTCCTCGACGGAAATAAATTCTCCGGTCAAATCCCACCTGAGATTGGGCGGTTACAGCAACTCTCAAAGATTGATTTCAGTAACAACAAGTTTTCAGGTCCAATCGCACCGGAGATTAGCCAATGCAAGCTGCTAACCTTCGTCGATCTCAGTCGGAACGAGCTCTCCGGTGAAATTCCAAACGAGATTACGAGTATGAGAATATTGAATTACCTAAATCTTTCAAAGAACCATTTAATCGGTGGAATCCCAGCTTCCATAGCCAGTATGCAGAGTTTGACCTCTGTAGATTTCTCATACAACAACCTCTCCGGCTTAGTTCCGGGAAGTGGGCAATTCAGCTACTTCAATTACACATCGTTTCTGGGCAATCCTGATCTCTGCGGCCCATATTTAGGACCATGCAAAGATGGGGTCGCCAATAGCAATTACCAACAACATGTAAAAGGTCCCTTCTCTGCTTCCCTTAAGCTCCTCCTTGTAATTGGTCTGCTTCTTTGCTCAATTGCATTTGCAGTGGCTGCAATCATCAAAGCTCGATCATTGAAGAGAGCCAGTGAGTCTCGGGCTTGGAAATTAACATCCTTCCAACGCCTAGATTTCACAGTTGATGATGTTCTTGATTGCTTGAAAGAGGACAACATCATTGGAAAAGGAGGTGCTGGAATTGTGTATAAAGGGGCGATGCCTAGTGGTGACCACGTTGCTGTCAAAAGACTGCCGGTAATGAGCCGAGGGTCTTCCCACGACCATGGATTCAACGCTGAGATACAAACTCTTGGGAGGATTCGACATAGACACATTGTTAGGTTATTGGGATTTTGTTCAAATCATGAGACAAATCTTTTGATTTATGAGTATATGCCTAATGGGAGCCTGGGGGAAGTTCTTCATGGGAAAAAAGGAGGTCACTTACAATGGGACACAAGGTATAAGATTGCCATTGAAGCTGCCAAAGGGCTTTGCTATCTCCATCATGATTGCTCGCCGCTCATTGTTCATCGAGATGTCAAATCAAACAACATACTTCTTGACACTAATTTTGAAGCTCATGTAGCTGATTTTGGCCTGGCCAAGTTCTTGCAGGATTCCGGCACTTCTGAGTGCATGTCTGCCATTGCTGGTTCTTATGGATATATTGCTCCAGAATACGCTTACACGCTGAAAGTTGATGAGAAGAGTGACGTGTATAGCTTTGGAGTTGTGCTCTTAGAGCTTGTCAGCGGAAGAAAACCGGTCGGAGAATTCGGGGACGGTGTTGACATAGTCCAATGGGTTAGAAAAATGACAGACTCAAACAAGGAAGAGGCAGTGAAAATCCTTGATCCAAGGCTGTCCTCCATCCCTCTCCATGAAGTGTCACACGTCTTCTATGTTGCAATGCTGTGCGTCGAAGAACAGGCGGTGGAGCGCCCGACGATGCGGGAAGTGATCCAAATCCTGTCGGAGATCCCACAGCCACCATGTTCAAAACCAGGAGACTCAGCACTCCCAAACTCCTCACCACCACCTGCAGCAGGGGCAGTAGCATTGGACCCTCCAACAACAGGAACCAAGAACAAAAAGGAGCAGCAGCAGCAGCAGCCGCCACCGGATCTTCTTAGCATTTGA 3051 47.72 MRLLPLLLLCLLQLHIHHCCSARVSEYRALLSLRTSISGDPKSSLSSWNASTSHCTWFGVTCDVRRHVTALDLSGLGLSGSLSPDVAYLRFLTNLSLASNDFSGPIPPEISSISSLRFLNLSNNVFDGSFPTQLSQLRNLQVLDLYNNNMTGDFPIVVTEMMSLRHLHLGGNFFAGAIPPEVGRMESLEYFAVSGNELGGSIPPEIGNLTNLRELYIGYFNAYVGGIPAEIGNLSELVRLDAANCGLSGRIPPELGKLKNLDTLFLQVNGLSGPLTPEIGELNGLKSLDLSNNMLVGEIPSSFSDLKNLTLLNLFRNKLHGAIPSFIGDLPKLEVLQLWENNFTEAIPQNLGKNGMLQILDLSSNKLTGNLPPDMCYGNRLQTLIALSNFLFGPIPESLGKCVSLNRIRMGDNFLNGSIPKGLLSLPDLSQVELQDNYLSGEFPVTDSISVNLGQISLSNNRLSGSIPPTIGNFSGVQKLLLDGNKFSGQIPPEIGRLQQLSKIDFSNNKFSGPIAPEISQCKLLTFVDLSRNELSGEIPNEITSMRILNYLNLSKNHLIGGIPASIASMQSLTSVDFSYNNLSGLVPGSGQFSYFNYTSFLGNPDLCGPYLGPCKDGVANSNYQQHVKGPFSASLKLLLVIGLLLCSIAFAVAAIIKARSLKRASESRAWKLTSFQRLDFTVDDVLDCLKEDNIIGKGGAGIVYKGAMPSGDHVAVKRLPVMSRGSSHDHGFNAEIQTLGRIRHRHIVRLLGFCSNHETNLLIYEYMPNGSLGEVLHGKKGGHLQWDTRYKIAIEAAKGLCYLHHDCSPLIVHRDVKSNNILLDTNFEAHVADFGLAKFLQDSGTSECMSAIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELVSGRKPVGEFGDGVDIVQWVRKMTDSNKEEAVKILDPRLSSIPLHEVSHVFYVAMLCVEEQAVERPTMREVIQILSEIPQPPCSKPGDSALPNSSPPPAAGAVALDPPTTGTKNKKEQQQQQPPPDLLSI 1016
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2771862 2775314 + CmoCh07G006160.1 Cmo07g00616 385924
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g00616 1016 Gene3D Phosphorylase Kinase; domain 1 655 767 - -
Cmo07g00616 1016 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 6 1004 - -
Cmo07g00616 1016 SMART LRR_typ_2 282 305 IPR003591 -
Cmo07g00616 1016 SMART LRR_typ_2 498 522 IPR003591 -
Cmo07g00616 1016 SMART LRR_typ_2 570 593 IPR003591 -
Cmo07g00616 1016 SMART LRR_typ_2 330 354 IPR003591 -
Cmo07g00616 1016 SMART LRR_typ_2 113 137 IPR003591 -
Cmo07g00616 1016 SMART LRR_typ_2 185 209 IPR003591 -
Cmo07g00616 1016 SMART LRR_typ_2 355 378 IPR003591 -
Cmo07g00616 1016 Pfam Protein tyrosine and serine/threonine kinase 692 961 IPR001245 GO:0004672|GO:0006468
Cmo07g00616 1016 SUPERFAMILY Protein kinase-like (PK-like) 682 961 IPR011009 -
Cmo07g00616 1016 MobiDBLite consensus disorder prediction 965 1016 - -
Cmo07g00616 1016 ProSiteProfiles Protein kinase domain profile. 690 964 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo07g00616 1016 Gene3D Transferase(Phosphotransferase) domain 1 768 970 - -
Cmo07g00616 1016 Gene3D Ribonuclease Inhibitor 354 619 IPR032675 -
Cmo07g00616 1016 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 6 1004 - -
Cmo07g00616 1016 ProSitePatterns Serine/Threonine protein kinases active-site signature. 812 824 IPR008271 GO:0004672|GO:0006468
Cmo07g00616 1016 SUPERFAMILY RNI-like 71 392 - -
Cmo07g00616 1016 Pfam Leucine Rich Repeat 285 305 IPR001611 GO:0005515
Cmo07g00616 1016 Pfam Leucine rich repeat N-terminal domain 26 63 IPR013210 -
Cmo07g00616 1016 SUPERFAMILY L domain-like 299 615 - -
Cmo07g00616 1016 Gene3D Ribonuclease Inhibitor 87 353 IPR032675 -
Cmo07g00616 1016 Gene3D Ribonuclease Inhibitor 19 86 IPR032675 -
Cmo07g00616 1016 SMART serkin_6 690 938 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo07g00616 1016 MobiDBLite consensus disorder prediction 997 1016 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g02039 Cmo-Chr1:14285614 Cmo07g00616 Cmo-Chr7:2771862 0 dispersed
Cmo04g00967 Cmo-Chr4:4920178 Cmo07g00616 Cmo-Chr7:2771862 0 dispersed
Cmo07g00616 Cmo-Chr7:2771862 Cmo16g00839 Cmo-Chr16:4422624 0 dispersed
Cmo07g00616 Cmo-Chr7:2771862 Cmo07g00617 Cmo-Chr7:2778362 0 tandem
Cmo16g00796 Cmo-Chr16:4048232 Cmo07g00616 Cmo-Chr7:2771862 0 transposed
Cmo03g00910 Cmo-Chr3:6986445 Cmo07g00616 Cmo-Chr7:2771862 0 wgd
Cmo07g00616 Cmo-Chr7:2771862 Cmo09g00612 Cmo-Chr9:3049038 2.44E-147 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74463 PF07714 PK_Tyr_Ser-Thr 3.10E-46 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g00616 - - cmos:111463083 1949.1