Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g00617 ATGAGATTTTTTGCCATTATTCTCCTTCTGCACCTGCAAATTCTGCAACTTTACTTTTCCCCTGCCTTCTCTGCATCCCTGACTGAATCACAGGCCCTTCTCTCCTTCAAAAACTCCATCTCCGATGACCCTCGTTCTTCTCTCTCCTCCTGGAACGCCGCCGTCGACCCCTGTACCTGGGCTCGCGTCACATGCGATGCCCGTGGCCATGTCCTCGCCCTCCACCTCTCTTCTCTCGACCTTTCCGGCACCCTTTCTCCTCATCTTGCCTCTCTTCCGTTTCTCACCAATGTTTCCTTCCAACTCAACAAATTCTCCGGCGGAATCCCCCCGGAGTTTGCCTCCATGTCTTCTCTCCGCCATCTTAATCTCTCTAGCAACCTCCTCAACGGCTCGATTCCTAGCGAGTTTTCGCAGCTGAAGAATCTACAAGTTCTCGATGTTTATAACAACAACATGACCGGCGTTTTCCCCAGAGTCGTCACTGAAATCCCCAATCTTCGCCATTTACACCTTGGGGGAAATTTCTTCTCCGGTCGAATCCCTCCGGAGATTGGACGCTTGCAGTTCTTGGAGTTTCTGGCGATTCATGGTAACGACCTTGAAGGTCCGATTCCGGCAACGATCGGAAACTTGACGAACCTTCGACAACTCTTCATTGGTTACTACAACACCTTCGTCGGTGGAATACCAGCGGCGATAGGAAACTTATCGGAGTTAGTTCTGTTAGACGCCGCGAGCTGTGGTTTGTCCGGAAAGTTCCCGCCGGAGCTCGGAAAGTTGCAGAAGCTCACTAAACTATTCCTTCAAGAAAATGCTCTGTCTGGATCATTAACAGAGCTAGGAGGATTGAAGAACATACAATCATTGGATATATCATGCAATATGCTTGTTGGTGAAATACCCATCTCTTTTGCAGAGTTCAAGAACTTGACACTATTGCACCTTTTCGACAATAAGCTCTCCGGTGAGATTCCGGGATTCATGGGTGACCTCCCAAACTTAGAGATATTGCAATTATGGAACAATAATTTCACTGGTTCGATTCCTCCGAATTTGGGGAAGAACAAACTGCTTCTGTTTCTCGATCTTGCTTTCAACCAGTTGACAGGCACAATTCCTTCTGAAATTTGCCATGGCGATCATCTTGAAGTTTTGATCCTTATGGGCAATTCCTTACATGGTTCCATCCCAGAATCGTTAGGAAATTGTACATCGCTTAGGCGTATACTTCTGTGGGGCAACGCTCTCAATGGATCAATTCCAAAGGGGCTTTTGGGTTTGCCAAATCTCACTCAAATTGATTTGCACGACAATTTTCTCTCCGGAGAACTTCCCATTACCGATTCAGCCTCAGTTAACCTTCTTCAGATCAGTTTATCCAACAATATGATCTCTGGATCTTTGCCGCCCACCATCGGCAACCTTCTGGCTGTCCAGAAGCTTCTTCTTGATCGGAATAAGTTTTCCGGTGAGATTCCTTCGACGATTGGGAGATTACAGCAACTATCTCGGATAAATTTCAGCCAGAATAAATTCTCCGGTAGAATTGTGCCGGAGATAAGTGAGTGCAAGCACTTGATCTTCCTTGATCTTAGTGGAAATGAGCTTTCAGGTGAAATTCCTAATAATATTACCAACATGAAATTATTGACATACATGAATCTTTCAAGAAACCATTTAGTTGGGTCAATTCCTGCTTCCATAGTTCATATGCAGAGCTTAACTTCTGTGGATTTTTCATATAACAATCTCTCTGGTTTGGTTTTGGGAACTGGGCAATTTGGTTACTTCAATTACACATCATTTCTTGGCAACCCTTATCTGTGTGGAGCCTATTTAGGGCCTTGCAATCATCAAGAACATATGAAGGTCTCCCTCTCAACTCCTCTCAGGCTCCTCCTAGTTTTTGGATCGTTTTTCTGTTTATTTGCTTTGACTGTTGCTTTGATCTTCAAAGTTCGGTCATTGAGGAGAGCAAGGGAGTTTCAAGGATGGAGATTAACAGCCTTCCAACGCTTGGGTTTCTCGGTTGATGAGGTCTTGAATTGCCTTAAGAAGGAAAATGCTATTGCAAAAGGAGGTTATGGCACGGTATATGAAGGAGTGATGCCTAGTGGTGATCAGGTCACTGTGAAGAGACTTCCAAAGATGAGCGATGGGTGTTCTAATGACGACGGGTTCGATACCGAGATACAAGCTCTTGGGAGGATTCGACACCGTCACGTTGTTAGATTATTGGGTTTTTGTTCAAACCATGACACTGGTCTTTTGGTATATGAGTACATGCCTAATGGGAACCTCTATGAGGTTCTTCATGGCAAGAAAGGAGGCCATTTGCTTTGGGATACGAGGTACAAGATAGCCATTGGAATTGCGAATGGACTCTGCTACCTTCACCACCATTGCTCACCGCCGATCGTTCATCGAGATGTGAAATCGAACAACATTATGCTCGACACCAATTTTGATCCTCAGCTTGCCAATTCTGGGCTCGCGAAGTTCTTACAAGATGCGGGCACATTGGATCGATCAGCTCTTGCACCAGGTATGACAATAAAACATGTCGACGAGAAGTGGGATGTATATAGCTTTGGCGTCGTCCTCTTCGAACTTGTTAGCGGTAGGAATCCAGTTGGTGAATTAAGCGACGGTGTGGACCTAGTCGAATGGGTTAGAAAAATGACGAACTCAGAAAAGGAAGGAATACATAAAATGGTTGATCAAAGACTCTCTTGTGTCCCCCTCGACGAGGTGATGCACGTTCTCAACGTCGCCATGCTCTGCACCGAAGAAGAGGCAGCAAAGCGCCCCACGATGCAGGAAGTCGTGCGAATCTTATCGGAGCATCAGCAACAATGA 2862 45.7 MRFFAIILLLHLQILQLYFSPAFSASLTESQALLSFKNSISDDPRSSLSSWNAAVDPCTWARVTCDARGHVLALHLSSLDLSGTLSPHLASLPFLTNVSFQLNKFSGGIPPEFASMSSLRHLNLSSNLLNGSIPSEFSQLKNLQVLDVYNNNMTGVFPRVVTEIPNLRHLHLGGNFFSGRIPPEIGRLQFLEFLAIHGNDLEGPIPATIGNLTNLRQLFIGYYNTFVGGIPAAIGNLSELVLLDAASCGLSGKFPPELGKLQKLTKLFLQENALSGSLTELGGLKNIQSLDISCNMLVGEIPISFAEFKNLTLLHLFDNKLSGEIPGFMGDLPNLEILQLWNNNFTGSIPPNLGKNKLLLFLDLAFNQLTGTIPSEICHGDHLEVLILMGNSLHGSIPESLGNCTSLRRILLWGNALNGSIPKGLLGLPNLTQIDLHDNFLSGELPITDSASVNLLQISLSNNMISGSLPPTIGNLLAVQKLLLDRNKFSGEIPSTIGRLQQLSRINFSQNKFSGRIVPEISECKHLIFLDLSGNELSGEIPNNITNMKLLTYMNLSRNHLVGSIPASIVHMQSLTSVDFSYNNLSGLVLGTGQFGYFNYTSFLGNPYLCGAYLGPCNHQEHMKVSLSTPLRLLLVFGSFFCLFALTVALIFKVRSLRRAREFQGWRLTAFQRLGFSVDEVLNCLKKENAIAKGGYGTVYEGVMPSGDQVTVKRLPKMSDGCSNDDGFDTEIQALGRIRHRHVVRLLGFCSNHDTGLLVYEYMPNGNLYEVLHGKKGGHLLWDTRYKIAIGIANGLCYLHHHCSPPIVHRDVKSNNIMLDTNFDPQLANSGLAKFLQDAGTLDRSALAPGMTIKHVDEKWDVYSFGVVLFELVSGRNPVGELSDGVDLVEWVRKMTNSEKEGIHKMVDQRLSCVPLDEVMHVLNVAMLCTEEEAAKRPTMQEVVRILSEHQQQ 953
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2778362 2782106 + CmoCh07G006170.1 Cmo07g00617 385925
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g00617 953 SUPERFAMILY Protein kinase-like (PK-like) 679 947 IPR011009 -
Cmo07g00617 953 Pfam Protein tyrosine and serine/threonine kinase 686 947 IPR001245 GO:0004672|GO:0006468
Cmo07g00617 953 SMART serkin_6 685 946 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo07g00617 953 Gene3D Ribonuclease Inhibitor 281 331 IPR032675 -
Cmo07g00617 953 ProSiteProfiles Protein kinase domain profile. 685 953 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo07g00617 953 Gene3D Ribonuclease Inhibitor 181 280 IPR032675 -
Cmo07g00617 953 Gene3D Ribonuclease Inhibitor 26 180 IPR032675 -
Cmo07g00617 953 Gene3D Phosphorylase Kinase; domain 1 662 762 - -
Cmo07g00617 953 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 6 951 - -
Cmo07g00617 953 SMART LRR_typ_2 428 452 IPR003591 -
Cmo07g00617 953 SMART LRR_typ_2 140 163 IPR003591 -
Cmo07g00617 953 SMART LRR_typ_2 332 356 IPR003591 -
Cmo07g00617 953 SMART LRR_typ_2 476 500 IPR003591 -
Cmo07g00617 953 SMART LRR_typ_2 164 188 IPR003591 -
Cmo07g00617 953 SMART LRR_typ_2 572 595 IPR003591 -
Cmo07g00617 953 SMART LRR_typ_2 261 284 IPR003591 -
Cmo07g00617 953 SMART LRR_typ_2 116 139 IPR003591 -
Cmo07g00617 953 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 6 951 - -
Cmo07g00617 953 Pfam Leucine rich repeat 118 175 IPR001611 GO:0005515
Cmo07g00617 953 ProSitePatterns Serine/Threonine protein kinases active-site signature. 807 819 IPR008271 GO:0004672|GO:0006468
Cmo07g00617 953 SUPERFAMILY L domain-like 358 616 - -
Cmo07g00617 953 Gene3D Transferase(Phosphotransferase) domain 1 763 953 - -
Cmo07g00617 953 SUPERFAMILY RNI-like 74 379 - -
Cmo07g00617 953 Gene3D Ribonuclease Inhibitor 332 626 IPR032675 -
Cmo07g00617 953 Pfam Leucine rich repeat N-terminal domain 28 66 IPR013210 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g00445 Cmo-Chr7:2046663 Cmo07g00617 Cmo-Chr7:2778362 1.04E-87 dispersed
Cmo07g00617 Cmo-Chr7:2778362 Cmo16g00796 Cmo-Chr16:4048232 0 dispersed
Cmo09g00612 Cmo-Chr9:3049038 Cmo07g00617 Cmo-Chr7:2778362 4.34E-148 dispersed
Cmo07g00616 Cmo-Chr7:2771862 Cmo07g00617 Cmo-Chr7:2778362 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74464 PF07714 PK_Tyr_Ser-Thr 1.70E-35 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g00617 - - cmos:111463083 1837.77