Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo07g00624 | ATGGGTTTTGACGATCTTCCTAATACGGGTCTTCTATTGGGATTGGGGTTAACGCTTCAATCCAAGCCCGCCTGCCTTTCTCAAAAACCCAACAACCCTGTCAATTTGTTCAGTTTCCCCGCCGTCGAATCCGAGCCGTCCTTAACTTTGGGGCTTTCTACTACGGCTGACTTGTGTCGTCAACCGTCCCCTCACAGCACGGTTTCTTCCCTCTCTGGCGGAAGGGTCAAGCGTGAAAGAGACGTTTCCGGCGAGGATATTGAAGAAGAGAAAGCTTCTTCTCGGGTTAGTGATGAAGAGGAAGATGGGTCTAATGCTAGGAAGAAACTTAGGCTAACTAAAGAACAATCCGCCCTCTTGGAGGAGAGCTTCAAACTTCACTGCACTCTCAACCCTAAGCAAAAACAAGCCTTAGCCAGAGAGTTAAATCTTCGGCCACGACAAGTTGAAGTTTGGTTCCAGAACAGAAGAGCCAGGACAAAGCTAAAGCAAACAGAGGTAGATTGCGAGTTTCTAAAGAGATGCTGCGAAACGCTAACAGACGAAAACAGAAGACTGCACAAAGAGCTGCAAGAATTGAAAGCCCTGAAACTAACCAAGCCTCTGTTCATGCAAATGCCGGCGGCAACACTCACCATGTGCCCCTCCTGCGAGCGGATCGGCGGCGCCACCGCCACTGTTAACGGCAACGGGAATTCCAAGGCCGCATTTTCAATGGCTCCAAAGCCCCAGTTTTACAAACCCTTCACCAATCCCTCTGCTGCTTGCTAA | 771 | 49.68 | MGFDDLPNTGLLLGLGLTLQSKPACLSQKPNNPVNLFSFPAVESEPSLTLGLSTTADLCRQPSPHSTVSSLSGGRVKRERDVSGEDIEEEKASSRVSDEEEDGSNARKKLRLTKEQSALLEESFKLHCTLNPKQKQALARELNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTDENRRLHKELQELKALKLTKPLFMQMPAATLTMCPSCERIGGATATVNGNGNSKAAFSMAPKPQFYKPFTNPSAAC | 256 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 2812539 | 2813907 | - | CmoCh07G006240.1 | Cmo07g00624 | 385932 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo07g00624 | 256 | Pfam | Homeobox associated leucine zipper | 163 | 197 | IPR003106 | GO:0006355|GO:0043565 | |
Cmo07g00624 | 256 | ProSiteProfiles | 'Homeobox' domain profile. | 103 | 163 | IPR001356 | GO:0003677 | |
Cmo07g00624 | 256 | Coils | Coil | 176 | 199 | - | - | |
Cmo07g00624 | 256 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT9 | 9 | 256 | - | - | |
Cmo07g00624 | 256 | PANTHER | - | 9 | 256 | - | - | |
Cmo07g00624 | 256 | ProSitePatterns | 'Homeobox' domain signature. | 138 | 161 | IPR017970 | GO:0000981|GO:0006355 | |
Cmo07g00624 | 256 | SMART | halz | 163 | 206 | IPR003106 | GO:0006355|GO:0043565 | |
Cmo07g00624 | 256 | SMART | HOX_1 | 105 | 167 | IPR001356 | GO:0003677 | |
Cmo07g00624 | 256 | MobiDBLite | consensus disorder prediction | 59 | 110 | - | - | |
Cmo07g00624 | 256 | MobiDBLite | consensus disorder prediction | 59 | 73 | - | - | |
Cmo07g00624 | 256 | Pfam | Homeodomain | 107 | 161 | IPR001356 | GO:0003677 | |
Cmo07g00624 | 256 | MobiDBLite | consensus disorder prediction | 74 | 110 | - | - | |
Cmo07g00624 | 256 | Gene3D | - | 113 | 159 | - | - | |
Cmo07g00624 | 256 | CDD | homeodomain | 107 | 164 | IPR001356 | GO:0003677 | |
Cmo07g00624 | 256 | SUPERFAMILY | Homeodomain-like | 99 | 164 | IPR009057 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo07g00624 | Cmo-Chr7:2812539 | Cmo08g00548 | Cmo-Chr8:3379157 | 4.09E-76 | dispersed | |
Cmo04g00907 | Cmo-Chr4:4562273 | Cmo07g00624 | Cmo-Chr7:2812539 | 3.08E-107 | transposed | |
Cmo03g00920 | Cmo-Chr3:7019514 | Cmo07g00624 | Cmo-Chr7:2812539 | 5.38E-145 | wgd | |
Cmo07g00624 | Cmo-Chr7:2812539 | Cmo09g00319 | Cmo-Chr9:1389769 | 1.96E-68 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
10122 | PF00046 | Homeodomain | 1.00E-15 | CL0123 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo07g00624 | K09338 | - | csv:101218782 | 406.371 |