Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g00624 ATGGGTTTTGACGATCTTCCTAATACGGGTCTTCTATTGGGATTGGGGTTAACGCTTCAATCCAAGCCCGCCTGCCTTTCTCAAAAACCCAACAACCCTGTCAATTTGTTCAGTTTCCCCGCCGTCGAATCCGAGCCGTCCTTAACTTTGGGGCTTTCTACTACGGCTGACTTGTGTCGTCAACCGTCCCCTCACAGCACGGTTTCTTCCCTCTCTGGCGGAAGGGTCAAGCGTGAAAGAGACGTTTCCGGCGAGGATATTGAAGAAGAGAAAGCTTCTTCTCGGGTTAGTGATGAAGAGGAAGATGGGTCTAATGCTAGGAAGAAACTTAGGCTAACTAAAGAACAATCCGCCCTCTTGGAGGAGAGCTTCAAACTTCACTGCACTCTCAACCCTAAGCAAAAACAAGCCTTAGCCAGAGAGTTAAATCTTCGGCCACGACAAGTTGAAGTTTGGTTCCAGAACAGAAGAGCCAGGACAAAGCTAAAGCAAACAGAGGTAGATTGCGAGTTTCTAAAGAGATGCTGCGAAACGCTAACAGACGAAAACAGAAGACTGCACAAAGAGCTGCAAGAATTGAAAGCCCTGAAACTAACCAAGCCTCTGTTCATGCAAATGCCGGCGGCAACACTCACCATGTGCCCCTCCTGCGAGCGGATCGGCGGCGCCACCGCCACTGTTAACGGCAACGGGAATTCCAAGGCCGCATTTTCAATGGCTCCAAAGCCCCAGTTTTACAAACCCTTCACCAATCCCTCTGCTGCTTGCTAA 771 49.68 MGFDDLPNTGLLLGLGLTLQSKPACLSQKPNNPVNLFSFPAVESEPSLTLGLSTTADLCRQPSPHSTVSSLSGGRVKRERDVSGEDIEEEKASSRVSDEEEDGSNARKKLRLTKEQSALLEESFKLHCTLNPKQKQALARELNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTDENRRLHKELQELKALKLTKPLFMQMPAATLTMCPSCERIGGATATVNGNGNSKAAFSMAPKPQFYKPFTNPSAAC 256
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2812539 2813907 - CmoCh07G006240.1 Cmo07g00624 385932
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g00624 256 Pfam Homeobox associated leucine zipper 163 197 IPR003106 GO:0006355|GO:0043565
Cmo07g00624 256 ProSiteProfiles 'Homeobox' domain profile. 103 163 IPR001356 GO:0003677
Cmo07g00624 256 Coils Coil 176 199 - -
Cmo07g00624 256 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT9 9 256 - -
Cmo07g00624 256 PANTHER - 9 256 - -
Cmo07g00624 256 ProSitePatterns 'Homeobox' domain signature. 138 161 IPR017970 GO:0000981|GO:0006355
Cmo07g00624 256 SMART halz 163 206 IPR003106 GO:0006355|GO:0043565
Cmo07g00624 256 SMART HOX_1 105 167 IPR001356 GO:0003677
Cmo07g00624 256 MobiDBLite consensus disorder prediction 59 110 - -
Cmo07g00624 256 MobiDBLite consensus disorder prediction 59 73 - -
Cmo07g00624 256 Pfam Homeodomain 107 161 IPR001356 GO:0003677
Cmo07g00624 256 MobiDBLite consensus disorder prediction 74 110 - -
Cmo07g00624 256 Gene3D - 113 159 - -
Cmo07g00624 256 CDD homeodomain 107 164 IPR001356 GO:0003677
Cmo07g00624 256 SUPERFAMILY Homeodomain-like 99 164 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g00624 Cmo-Chr7:2812539 Cmo08g00548 Cmo-Chr8:3379157 4.09E-76 dispersed
Cmo04g00907 Cmo-Chr4:4562273 Cmo07g00624 Cmo-Chr7:2812539 3.08E-107 transposed
Cmo03g00920 Cmo-Chr3:7019514 Cmo07g00624 Cmo-Chr7:2812539 5.38E-145 wgd
Cmo07g00624 Cmo-Chr7:2812539 Cmo09g00319 Cmo-Chr9:1389769 1.96E-68 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10122 PF00046 Homeodomain 1.00E-15 CL0123 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g00624 K09338 - csv:101218782 406.371