Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g00637 ATGAATAATGTTAATGGCAACAACTGTAACTGGTTAGGTTTCTCTGTGTCCCCTAACGTTAACATGGAGCTTTCTTCTTCCTCTGCTGCTGCTGCCTCCCCTTCAGTTCCTGCAAATCTTTTTCACTCCCCATCTCAGTATAACTATGGCATTTACTATGGAGTTGATGGAGAACATGGTGGTTTTTATTCACCATTGTCTGTCATGCCTCTCAAGTCTGATGGTTCAATTTGTTCAATGGAAGCTCTCAGCAGGCAGCACCCAGAAGCGGTGAGTAGCTCTACTCCAAAACTAGAGGATTTCTTTGGTGGTGCTACTATGGGGTCCCATCACTATGAAAGCAATGCCAGGGAAGCTATTGCTCTCAGCTTAGACAGTATATTTTGCCATCAAAACCCAACTCATGAGCCCAACAACCAACCCTATGCACATTTTTCATCCTTAAGAAGCCGTGAAGTGATGCTTCAAGACTCGAAGGTAATTCTGCCCGATGGGTGCAATCTGCAGCAGCAGCACCCAACAGTGGCAGAGAATGAGATTTCTGGTATGAAGAATTGGGCTGTTCCTAGGGGCTATGCTGCCACTGACAATAGTTCCTTCGAACAGAAGATGGTGAGTTTCATGAGTGAAAATGGTGGTGAATCTGGTCCCATTAATGCCATGGCTTATGGAGATTTACAGTCATTGAGCTTGTCCATGACTATGAGTCCCAGCTCTCAATCAAGCTGTGTCACAGCCACACAGCATGTCTCACCTGCCATGGGTGACTGTTCTGCCATGGATTCAAAGAAAAGAATCCATGAGAAGTTGGATCAGAAGCAAATTGTTCATAGGAAGTCTTTAGATACCTTTGGTCAGAGAACCTCACAGTATAGAGGGGTTACAAGGCACAGATGGACGGGTAGGTATGAAGCACATTTATGGGACAACAGTTGCAAGAAAGAAGGTCAAAGCAGGAAGGGAAGGCAAGTGTACCTTGGAGGTTATGATATGGAAGAGAAAGCCGCTAGAGCTTATGATCTTGCTGCACTCAAGTACTGGGGACCCTCCACCCACATTAACTTTCCTTTGGAAAACTATCAGAAAGAATTAGAGGAAATGAAAAACATGAGTAGGCAGGAATATGTTGCTCATCTGAGAAGGAGAAGCAGCGGATTCTCGAGGGGGGCCTCGATTTACAGAGGCGTAACAAGACATCATCAACATGGAAGATGGCAGGCTCGGATAGGCCGAGTTGCTGGTAACAAAGATCTGTATCTTGGGACATTCAGTACTCAAGAGGAAGCGGCCGAGGCCTACGACATAGCAGCCATAAAATTTCGAGGAATGAATGCAGTTACTAACTTTGATATCACAAGGTATGACGTTGAGCGGATCATCGCTAGCAACACGCTTCTTAGTGGCGATGTAGCTAAAAGAAAGCAGCAGCCGGATTTTAATAATGAATCTCTTAGTGAAAGCCCTCCTACTCACAACAGCAATGCAGAGGCCTCTATGCCTTTGCCCTCACAGAGTAGTCAAAGTGAATCAGACTGGAAGATGGCTCTCTATCAGTCATCCCAGCAGCAGCTCATTCCAAAGCCTCGGTTGTTGTCTGCAATAACCGATGATGGTTCACAGCTAGGAGTCGAAGACTCGGCCAAAATGATGGGAGCTCATTTCTCCAATGCATCTTCAATGGTGACCAGCTGCAGCTTGAGCAGCTCAAGGGAGGAGAGTCCAGACAAGACAAGCCTTTCAATGGTTTTCGGAATGCCTCAACCGACATCTAGGCCGTTCGCTGCCCCAGCTAGTAATATGAACTCCTCCTCCTCCTGGATTGCATCTGCCCAACAGTTGAGGGCAGCCAATTGTATGAGCCAGTTGCCAGTTTTTGCTGGGTGGACTGATACTTAA 1896 46.36 MNNVNGNNCNWLGFSVSPNVNMELSSSSAAAASPSVPANLFHSPSQYNYGIYYGVDGEHGGFYSPLSVMPLKSDGSICSMEALSRQHPEAVSSSTPKLEDFFGGATMGSHHYESNAREAIALSLDSIFCHQNPTHEPNNQPYAHFSSLRSREVMLQDSKVILPDGCNLQQQHPTVAENEISGMKNWAVPRGYAATDNSSFEQKMVSFMSENGGESGPINAMAYGDLQSLSLSMTMSPSSQSSCVTATQHVSPAMGDCSAMDSKKRIHEKLDQKQIVHRKSLDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQSRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHINFPLENYQKELEEMKNMSRQEYVAHLRRRSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGMNAVTNFDITRYDVERIIASNTLLSGDVAKRKQQPDFNNESLSESPPTHNSNAEASMPLPSQSSQSESDWKMALYQSSQQQLIPKPRLLSAITDDGSQLGVEDSAKMMGAHFSNASSMVTSCSLSSSREESPDKTSLSMVFGMPQPTSRPFAAPASNMNSSSSWIASAQQLRAANCMSQLPVFAGWTDT 631
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2876799 2880410 - CmoCh07G006370.1 Cmo07g00637 385945
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g00637 631 Pfam AP2 domain 392 442 IPR001471 GO:0003700|GO:0006355
Cmo07g00637 631 Pfam AP2 domain 290 348 IPR001471 GO:0003700|GO:0006355
Cmo07g00637 631 Gene3D AP2/ERF domain 392 452 IPR036955 GO:0003700|GO:0006355
Cmo07g00637 631 Gene3D AP2/ERF domain 289 358 IPR036955 GO:0003700|GO:0006355
Cmo07g00637 631 SUPERFAMILY DNA-binding domain 391 451 IPR016177 GO:0003677
Cmo07g00637 631 SUPERFAMILY DNA-binding domain 289 358 IPR016177 GO:0003677
Cmo07g00637 631 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 8 587 - -
Cmo07g00637 631 ProSiteProfiles AP2/ERF domain profile. 392 450 IPR001471 GO:0003700|GO:0006355
Cmo07g00637 631 Coils Coil 357 377 - -
Cmo07g00637 631 MobiDBLite consensus disorder prediction 477 511 - -
Cmo07g00637 631 CDD AP2 391 452 IPR001471 GO:0003700|GO:0006355
Cmo07g00637 631 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 8 587 - -
Cmo07g00637 631 MobiDBLite consensus disorder prediction 471 511 - -
Cmo07g00637 631 SMART rav1_2 392 456 IPR001471 GO:0003700|GO:0006355
Cmo07g00637 631 SMART rav1_2 290 362 IPR001471 GO:0003700|GO:0006355
Cmo07g00637 631 CDD AP2 289 356 IPR001471 GO:0003700|GO:0006355
Cmo07g00637 631 PRINTS Ethylene responsive element binding protein signature 291 302 IPR001471 GO:0003700|GO:0006355
Cmo07g00637 631 PRINTS Ethylene responsive element binding protein signature 432 452 IPR001471 GO:0003700|GO:0006355
Cmo07g00637 631 ProSiteProfiles AP2/ERF domain profile. 290 356 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g00637 Cmo-Chr7:2876799 Cmo12g01004 Cmo-Chr12:9385816 4.68E-111 dispersed
Cmo07g00986 Cmo-Chr7:4842641 Cmo07g00637 Cmo-Chr7:2876799 5.07E-54 dispersed
Cmo14g00175 Cmo-Chr14:787506 Cmo07g00637 Cmo-Chr7:2876799 8.19E-09 dispersed
Cmo17g00881 Cmo-Chr17:8019784 Cmo07g00637 Cmo-Chr7:2876799 3.23E-88 dispersed
Cmo01g01825 Cmo-Chr1:13364902 Cmo07g00637 Cmo-Chr7:2876799 3.02E-28 wgd
Cmo12g00550 Cmo-Chr12:3388854 Cmo07g00637 Cmo-Chr7:2876799 3.96E-07 wgd
Cmo03g00934 Cmo-Chr3:7088777 Cmo07g00637 Cmo-Chr7:2876799 0 wgd
Cmo05g00125 Cmo-Chr5:542544 Cmo07g00637 Cmo-Chr7:2876799 2.79E-164 wgd
Cmo07g00637 Cmo-Chr7:2876799 Cmo09g00310 Cmo-Chr9:1336180 1.79E-31 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10124 PF00847 AP2 1.20E-13 CL0081 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g00637 K09285 - csv:101203323 1095.11