Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g00654 ATGGGTGCGCCAAAGCAGAAATGGACAGCTGAAGAAGAAGCTGCCCTTAAAGCAGGAGTGATCAAGCATGGAGCAGGAAAATGGCGCACAATACTAACAGATCCAGAGTTCAGCTCAATTTTGCATCAGCGCTCAAATGTGGATCTCAAGGACAAGTGGAGAAATATAAATGTTACTGCAATATGGGGCTCTAGGCAAAAAGCTAAGCTCGCACTTAAAAAGAATCCTTTGGCCCTAAAACATCACGATGATCCTATGCCTGTAAGCACCGTGCATCAGAATGAGGAGATTGTTGACGCTAAGCCACTTGCAATTTCAAATGGAACAATTCGCACTAATGGTCCAAAAGAGCCACTAGCAAGATTGGACAAACTTATATCAGAGGCAATTAACAACTTAAAGGAGCAAAGGGGTTCTGACCGGGCTGCAATTGCTATGTACATAGAGGAGCATTACTGGGCCCCACCAAACCTTAAAAAACTCCTTTCAACAAAATTGAAGCATATGACGGCAAATGGAAAGTTGATAAAGGTAAAGCACAAGTACAGAATTGATCCAAATTCAACCTTATCTGGAAGAAGAAATGTTCCATTGTTACTCCTTGAGGACAAGCAGATGGATTCTTCGAAGGCCGAGAAGAGTGAAGTCAAAATCATCACTAAATCCCAAGTTGACTCGGAACTTTCGAAGATGAAGATAATGACTACAGAGGAGGCGGCTATAGCTGCTGCACGTGCAGTAGCTGAGGCAGAGGCTGCCATTGCAGAGGCTGAAAGGGCAGCAAGAGAAGCAGAAGAAGCAGAGGCTGAAGCTGAATCAGCACAAGTTTTTGCTGAAGCGGCGATGAAGGCATTGGAGTGCAGAATGTTCCCTAGTAGAAATCCTATTCAAAAAGTTCTTCTCCAAGAATATGATTGCCTTATGAGAAAGACGGCCTCTGGGGATCATGTCATCGGAAGTATGTCTATAGAAATTCTAAGGCAGGAGGAGGATGCTGAAAAGGCTCAAATTCACTTTCGTCTGTTACGCATCGCTGACGGCCTCATGTGGGATTTGTTTTGTTTCCCTCTTCAGTCGAATCAAAAGATTCGATAA 1095 43.84 MGAPKQKWTAEEEAALKAGVIKHGAGKWRTILTDPEFSSILHQRSNVDLKDKWRNINVTAIWGSRQKAKLALKKNPLALKHHDDPMPVSTVHQNEEIVDAKPLAISNGTIRTNGPKEPLARLDKLISEAINNLKEQRGSDRAAIAMYIEEHYWAPPNLKKLLSTKLKHMTANGKLIKVKHKYRIDPNSTLSGRRNVPLLLLEDKQMDSSKAEKSEVKIITKSQVDSELSKMKIMTTEEAAIAAARAVAEAEAAIAEAERAAREAEEAEAEAESAQVFAEAAMKALECRMFPSRNPIQKVLLQEYDCLMRKTASGDHVIGSMSIEILRQEEDAEKAQIHFRLLRIADGLMWDLFCFPLQSNQKIR 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2944985 2951607 + CmoCh07G006540.1 Cmo07g00654 385962

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g00654 364 Gene3D - 2 59 - -
Cmo07g00654 364 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Cmo07g00654 364 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 118 186 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cmo07g00654 364 Pfam linker histone H1 and H5 family 123 180 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cmo07g00654 364 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Cmo07g00654 364 Gene3D - 118 195 IPR036388 -
Cmo07g00654 364 SUPERFAMILY Homeodomain-like 2 63 IPR009057 -
Cmo07g00654 364 CDD SANT_TRF 6 57 - -
Cmo07g00654 364 SMART h15plus2 116 181 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cmo07g00654 364 PANTHER TELOMERE REPEAT-BINDING FACTOR 2 1 289 - -
Cmo07g00654 364 SUPERFAMILY Winged helix DNA-binding domain 116 194 IPR036390 -
Cmo07g00654 364 PANTHER SINGLE MYB HISTONE 4 1 289 IPR044597 GO:0003691
Cmo07g00654 364 SMART sant 4 59 IPR001005 -
Cmo07g00654 364 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Cmo07g00654 364 Coils Coil 240 277 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g00654 K09422 MYBP; transcription factor MYB, plant - csv:101202913 463.766
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g00654 Cmo-Chr7:2944985 Cmo14g01287 Cmo-Chr14:10777356 3.38E-35 dispersed
Cmo16g00332 Cmo-Chr16:1518183 Cmo07g00654 Cmo-Chr7:2944985 7.99E-72 wgd
Cmo03g00951 Cmo-Chr3:7151498 Cmo07g00654 Cmo-Chr7:2944985 1.56E-171 wgd
Cmo04g00473 Cmo-Chr4:2362687 Cmo07g00654 Cmo-Chr7:2944985 4.20E-68 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo16g00332 CST 1 325 Single Myb Histone (SMH) Gene Family AT1G49950 60.8 2.6e-75 279.6
Cmo04g00473 CST 1 328 Single Myb Histone (SMH) Gene Family AT1G49950 55.4 4.5e-67 252.3
Cmo03g00951 . 20 266 Single Myb Histone (SMH) Gene Family AT1G49950 53.9 3.0e-63 239.6
Cmo07g00654 . 1 247 Single Myb Histone (SMH) Gene Family AT1G49950 51.6 5.3e-60 228.8
Cmo07g00654 . 1 250 Single Myb Histone (SMH) Gene Family AT5G67580 53.7 2.6e-67 253.1
Cmo03g00951 . 20 266 Single Myb Histone (SMH) Gene Family AT5G67580 53.2 3.2e-65 246.1
Cmo07g00654 . 1 249 Single Myb Histone (SMH) Gene Family AT3G49850 51.4 3.7e-58 222.6
Cmo03g00951 . 20 266 Single Myb Histone (SMH) Gene Family AT3G49850 50.2 1.6e-56 217.2
Cmo01g00058 . 1 277 Single Myb Histone (SMH) Gene Family AT1G17520 51.9 1.4e-70 263.8
Cmo14g01287 . 1 277 Single Myb Histone (SMH) Gene Family AT1G17520 51.4 7.9e-69 258.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003466 1 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 2 1 4 4 0 45
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10128 PF00538 Linker_histone 4.10E-11 CL0123 Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo07g00654 Cmo_Chr07 FPKM 1.444906 1.613205 1.685729 1.453793 0.582028 0.624441 0.530868 9.895176 11.202312 11.679227