Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g00654 ATGGGTGCGCCAAAGCAGAAATGGACAGCTGAAGAAGAAGCTGCCCTTAAAGCAGGAGTGATCAAGCATGGAGCAGGAAAATGGCGCACAATACTAACAGATCCAGAGTTCAGCTCAATTTTGCATCAGCGCTCAAATGTGGATCTCAAGGACAAGTGGAGAAATATAAATGTTACTGCAATATGGGGCTCTAGGCAAAAAGCTAAGCTCGCACTTAAAAAGAATCCTTTGGCCCTAAAACATCACGATGATCCTATGCCTGTAAGCACCGTGCATCAGAATGAGGAGATTGTTGACGCTAAGCCACTTGCAATTTCAAATGGAACAATTCGCACTAATGGTCCAAAAGAGCCACTAGCAAGATTGGACAAACTTATATCAGAGGCAATTAACAACTTAAAGGAGCAAAGGGGTTCTGACCGGGCTGCAATTGCTATGTACATAGAGGAGCATTACTGGGCCCCACCAAACCTTAAAAAACTCCTTTCAACAAAATTGAAGCATATGACGGCAAATGGAAAGTTGATAAAGGTAAAGCACAAGTACAGAATTGATCCAAATTCAACCTTATCTGGAAGAAGAAATGTTCCATTGTTACTCCTTGAGGACAAGCAGATGGATTCTTCGAAGGCCGAGAAGAGTGAAGTCAAAATCATCACTAAATCCCAAGTTGACTCGGAACTTTCGAAGATGAAGATAATGACTACAGAGGAGGCGGCTATAGCTGCTGCACGTGCAGTAGCTGAGGCAGAGGCTGCCATTGCAGAGGCTGAAAGGGCAGCAAGAGAAGCAGAAGAAGCAGAGGCTGAAGCTGAATCAGCACAAGTTTTTGCTGAAGCGGCGATGAAGGCATTGGAGTGCAGAATGTTCCCTAGTAGAAATCCTATTCAAAAAGTTCTTCTCCAAGAATATGATTGCCTTATGAGAAAGACGGCCTCTGGGGATCATGTCATCGGAAGTATGTCTATAGAAATTCTAAGGCAGGAGGAGGATGCTGAAAAGGCTCAAATTCACTTTCGTCTGTTACGCATCGCTGACGGCCTCATGTGGGATTTGTTTTGTTTCCCTCTTCAGTCGAATCAAAAGATTCGATAA 1095 43.84 MGAPKQKWTAEEEAALKAGVIKHGAGKWRTILTDPEFSSILHQRSNVDLKDKWRNINVTAIWGSRQKAKLALKKNPLALKHHDDPMPVSTVHQNEEIVDAKPLAISNGTIRTNGPKEPLARLDKLISEAINNLKEQRGSDRAAIAMYIEEHYWAPPNLKKLLSTKLKHMTANGKLIKVKHKYRIDPNSTLSGRRNVPLLLLEDKQMDSSKAEKSEVKIITKSQVDSELSKMKIMTTEEAAIAAARAVAEAEAAIAEAERAAREAEEAEAEAESAQVFAEAAMKALECRMFPSRNPIQKVLLQEYDCLMRKTASGDHVIGSMSIEILRQEEDAEKAQIHFRLLRIADGLMWDLFCFPLQSNQKIR 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2944985 2951607 + CmoCh07G006540.1 Cmo07g00654 385962
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g00654 364 Gene3D - 2 59 - -
Cmo07g00654 364 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Cmo07g00654 364 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 118 186 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cmo07g00654 364 Pfam linker histone H1 and H5 family 123 180 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cmo07g00654 364 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Cmo07g00654 364 Gene3D - 118 195 IPR036388 -
Cmo07g00654 364 SUPERFAMILY Homeodomain-like 2 63 IPR009057 -
Cmo07g00654 364 CDD SANT_TRF 6 57 - -
Cmo07g00654 364 SMART h15plus2 116 181 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cmo07g00654 364 PANTHER TELOMERE REPEAT-BINDING FACTOR 2 1 289 - -
Cmo07g00654 364 SUPERFAMILY Winged helix DNA-binding domain 116 194 IPR036390 -
Cmo07g00654 364 PANTHER SINGLE MYB HISTONE 4 1 289 IPR044597 GO:0003691
Cmo07g00654 364 SMART sant 4 59 IPR001005 -
Cmo07g00654 364 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Cmo07g00654 364 Coils Coil 240 277 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g00654 Cmo-Chr7:2944985 Cmo14g01287 Cmo-Chr14:10777356 3.38E-35 dispersed
Cmo16g00332 Cmo-Chr16:1518183 Cmo07g00654 Cmo-Chr7:2944985 7.99E-72 wgd
Cmo03g00951 Cmo-Chr3:7151498 Cmo07g00654 Cmo-Chr7:2944985 1.56E-171 wgd
Cmo04g00473 Cmo-Chr4:2362687 Cmo07g00654 Cmo-Chr7:2944985 4.20E-68 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10128 PF00538 Linker_histone 4.10E-11 CL0123 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g00654 K09422 - csv:101202913 463.766