Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g00657 ATGGAGAGGTTTTTGGACGAGAATTTTGGAGGCGTCAAGCCCAAAAACTCGTCTGACGAGGTGCTCCAGAAGTGGAGGGATCTTTGTGGAGTGGTTAAGAACCCTAAAAGGAGGTTTCGCTTTACCGCCAATCTCTCCAAGCGTGGCGAAGCTGCTGCTATGCGCCAGAGTAATCAGGAGAAGTTGAGGGTCGCAGTTTTAGTCTCAAAAGCTGCATTTCAATTCATCCAAGGTATGCAACCAAGTGATTATAATGTTCCGGAGGATGTCAAAGCTGCAGGTTTCCATATTTGTGCTGATGAACTTGGGGCAATTGTTGAAGGCCATGATCCAAAGAAGTTAAAACATCATGGTGGTGTTGAAGGAATTGCTCAGAAGCTCTGTACATCAACAACAACTGGGCTTAATGGCGATGCTGATGCACTCAACAGTAGGCAAGAGATTTATGGAGTTAATAAATTTGCTGAGAGTGAACAGAGGAGTTTCTTGGTGTTCGTTTGGGAGGCACTCCAAGACATGACTCTCCTGATCCTTGGACTCTGTGCCTTCGTCTCTTTGGTAGTTGGCATAATAACTGAAGGATGGCCGCATGGGGCTCATGATGGCCTTGGAATTGTTGCCAGTATCTTGTTAGTTGTATTTGTGACAGCAACTAGTGATTATCGACAATCCTTGCAGTTCAAGGACTTGGATAAGGAGAAAAAGAAGATATCAATTCAGGTTACAAGGAATGATTATAGACAGAAAATGTCAATTTATGATTTGCTTCCTGGAGATATTGTACACCTGTCTCTTGGGGACCAAGTTCCTGCAGATGGACTATTTGTTTCAGGGTTTTCTGTGTTGATTGATGAGTCAAGTTTGACTGGAGAAAGTGAGCCAGTGATGGTGAGTGCAGAAAGCCCTTTTCTTTTATCAGGAACTAAAGTTCAAGATGGATCCTGCAAGATGATGATCACTACTGTTGGGATGAGAACCCAATGGGGTAAGTTGATGGCCACTCTTAGTGAAGGTGGAGATGATGAAACTCCATTGCAGGTGAAATTGAATGGAGTGGCAACAATTATTGGGAAAATAGGTCTTTTCTTTGCCATCATCACATTCGCTGTGTTGGTTCAAGGATTGGTTAGCCAGAAGCTTCGAGAAGGGACTCACTGGAACTGGTCAGGAGATGACGCATTAGAGATATTGGAATTCTTTGCCGTTGCAGTCACAATTGTTGTTGTTGCTGTGCCAGAGGGGCTTCCTTTGGCTGTGACATTAAGCCTTGCCTTTGCCATGAAGAAAATGATGAATGATAAAGCACTTGTCCGTCACCTTGCAGCTTGTGAAACTATGGGTTCTGCCACAACTATTTGTAGTGACAAAACTGGAACAATCACTACAAATCACATGACAGTGGTCAAATCATGCATTTGCATGAATGTCAAAGAATCAAGTAATAATCCATCAAGCTTCTGCTCTGACCTTCCATCCTCCGTTGTCAAGCTTCTGCTACAATCAATATTCAACAACACTGGGGGAGAAGTTGTAATCAACAAAAATGGCAAACGTGAGTTGTTGGGCACTCCCACTGAGACTGCATTATTAGAGTTTGGTCTTTCACTCGGTGGTGATTTTCAGGCTGAGAGACAGGCAGGTAAACTTATTAAAGTTGAGCCATTCAATTCTTTGAAAAAACGGATGGGTGTTGTCCTACAATTTCCTGAAGGTGGTTTCCGAGCTCACACTAAAGGTGCTTCAGAAATAGTATTGGCTGCCTGTGACAAGGTGATCAACTCGAGTGGTGAGGCTGTTCCTTTAGATGAAACTTCCACCAAACATCTCAATGTTATTATCGATCAATTTGCTGGTGAGGCTCTCCGAACACTTTGCCTTGCCTATATGGAATTGGAAAATGGATTCTCTGTCAATGATCCTATTCCCGTTTCTGGTTATACCTGCATTGGTATTGTGGGTATTAAAGATCCTGTTCGTCCTGGTGTTAAGGAGTCTGTTGCAGTTTGTCGTTCAGCTGGTATTACTGTACGAATGGTTACCGGCGACAATATTAATACTGCAAAAGCTATTGCTAAGGAATGTGGAATTCTCACTGATGATGGCATAGCCATTGAGGGTCCAGATTTCAGAGAGAAGACTCAAGAGGAATTGCTTAAAATTATTCCCAAAATTCAGGTGATGGCTCGATCCTCACCTCTAGATAAGCACACCCTGGTCAAGCATTTGCGGACCACCTTTGATGAAGTTGTTGCAGTTACTGGTGATGGAACAAACGATGCTCCTGCGCTTCATGAAGCAGATATTGGACTAGCAATGGGCATTGCTGGAACTGAGGTCGCCAAAGAGAGTGCTGATGTGATCATTCTTGATGATAATTTCTCTACTATCGTGACTGTGGGAAAATGGGGTCGTTCTGTTTACATAAATATTCAAAAATTCGTGCAATTCCAGCTGACTGTCAACATTGTGGCGTTGATTGTGAACTTCTCTTCAGCTTGTTTGACAGGTAATGCACCCCTTACTGCAGTCCAGCTCTTGTGGGTGAACATGATTATGGACACACTTGGAGCTTTGGCTCTCGCCACTGAGCCTCCGAATGATGAGTTGATGAAGCGCTTACCCGTTGGAAGGAGAGGAAGTTTTATCAGCAATGTCATGTGGAGAAATATCTTGGGGCAGTCCGTGTATCAGCTCTCAGTGATATGGTTTTTACAGGCCAAAGGGAAAGAAGCGTTTGATCTAGACAGCACTGATTCTGATCAGATACTGAATACCCTCATCTTCAATTCCTTTGTGTTCTGTCAGATTTTTAACGAAATAAGTTCCAGGGAGATGGACAAAATCGATGTCTTTCGAGGCATGCTTAATAACTATGTGTTTGTTGCTGTCATTGGTTCCACCGTTCTGTTCCAAATACTAATCATCGAATTTTTGGGAACATTTGCAAGCACCACCCCTCTGACTTCGTCGGAGTGGCTGTTTAGCGTGGTGGTTGGATTTCTAGGCATGCCCATTGCTGCTTTCTTGAAGACTATTCCAGTATAA 3045 43.38 MERFLDENFGGVKPKNSSDEVLQKWRDLCGVVKNPKRRFRFTANLSKRGEAAAMRQSNQEKLRVAVLVSKAAFQFIQGMQPSDYNVPEDVKAAGFHICADELGAIVEGHDPKKLKHHGGVEGIAQKLCTSTTTGLNGDADALNSRQEIYGVNKFAESEQRSFLVFVWEALQDMTLLILGLCAFVSLVVGIITEGWPHGAHDGLGIVASILLVVFVTATSDYRQSLQFKDLDKEKKKISIQVTRNDYRQKMSIYDLLPGDIVHLSLGDQVPADGLFVSGFSVLIDESSLTGESEPVMVSAESPFLLSGTKVQDGSCKMMITTVGMRTQWGKLMATLSEGGDDETPLQVKLNGVATIIGKIGLFFAIITFAVLVQGLVSQKLREGTHWNWSGDDALEILEFFAVAVTIVVVAVPEGLPLAVTLSLAFAMKKMMNDKALVRHLAACETMGSATTICSDKTGTITTNHMTVVKSCICMNVKESSNNPSSFCSDLPSSVVKLLLQSIFNNTGGEVVINKNGKRELLGTPTETALLEFGLSLGGDFQAERQAGKLIKVEPFNSLKKRMGVVLQFPEGGFRAHTKGASEIVLAACDKVINSSGEAVPLDETSTKHLNVIIDQFAGEALRTLCLAYMELENGFSVNDPIPVSGYTCIGIVGIKDPVRPGVKESVAVCRSAGITVRMVTGDNINTAKAIAKECGILTDDGIAIEGPDFREKTQEELLKIIPKIQVMARSSPLDKHTLVKHLRTTFDEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKESADVIILDDNFSTIVTVGKWGRSVYINIQKFVQFQLTVNIVALIVNFSSACLTGNAPLTAVQLLWVNMIMDTLGALALATEPPNDELMKRLPVGRRGSFISNVMWRNILGQSVYQLSVIWFLQAKGKEAFDLDSTDSDQILNTLIFNSFVFCQIFNEISSREMDKIDVFRGMLNNYVFVAVIGSTVLFQILIIEFLGTFASTTPLTSSEWLFSVVVGFLGMPIAAFLKTIPV 1014
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2953435 2958113 - CmoCh07G006570.1 Cmo07g00657 385965
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g00657 1014 SMART Cation_ATPase_N_a_2 114 190 IPR004014 -
Cmo07g00657 1014 Gene3D - 168 1010 - -
Cmo07g00657 1014 SUPERFAMILY Calcium ATPase, transduction domain A 239 333 IPR008250 -
Cmo07g00657 1014 CDD P-type_ATPase_Ca_PMCA-like 142 886 - -
Cmo07g00657 1014 SUPERFAMILY HAD-like 451 858 IPR036412 -
Cmo07g00657 1014 Pfam Ca2+-ATPase N terminal autoinhibitory domain 5 49 IPR024750 GO:0005516
Cmo07g00657 1014 Gene3D - 17 77 - -
Cmo07g00657 1014 PANTHER CALCIUM-TRANSPORTING ATPASE 1 5 1013 - -
Cmo07g00657 1014 PRINTS P-type cation-transporting ATPase superfamily signature 284 298 - -
Cmo07g00657 1014 PRINTS P-type cation-transporting ATPase superfamily signature 453 467 - -
Cmo07g00657 1014 PRINTS P-type cation-transporting ATPase superfamily signature 650 661 - -
Cmo07g00657 1014 PRINTS P-type cation-transporting ATPase superfamily signature 672 682 - -
Cmo07g00657 1014 PRINTS P-type cation-transporting ATPase superfamily signature 753 772 - -
Cmo07g00657 1014 PRINTS P-type cation-transporting ATPase superfamily signature 777 789 - -
Cmo07g00657 1014 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 110 1014 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Cmo07g00657 1014 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 459 662 IPR023299 GO:0000166
Cmo07g00657 1014 SFLD Haloacid Dehalogenase 435 805 - -
Cmo07g00657 1014 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 545 698 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cmo07g00657 1014 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 394 479 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cmo07g00657 1014 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 719 834 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cmo07g00657 1014 Pfam Cation transport ATPase (P-type) 513 591 - -
Cmo07g00657 1014 Gene3D - 450 798 IPR023214 -
Cmo07g00657 1014 Pfam E1-E2 ATPase 237 431 - -
Cmo07g00657 1014 SFLD p-type atpase 435 805 IPR044492 -
Cmo07g00657 1014 PRINTS H+-transporting ATPase (proton pump) signature 609 627 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cmo07g00657 1014 PRINTS H+-transporting ATPase (proton pump) signature 753 769 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cmo07g00657 1014 PRINTS H+-transporting ATPase (proton pump) signature 785 810 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cmo07g00657 1014 SUPERFAMILY Calcium ATPase, transmembrane domain M 116 1013 IPR023298 -
Cmo07g00657 1014 Pfam Cation transporting ATPase, C-terminus 838 1011 IPR006068 -
Cmo07g00657 1014 Gene3D - 463 657 IPR023299 GO:0000166
Cmo07g00657 1014 Pfam haloacid dehalogenase-like hydrolase 737 793 - -
Cmo07g00657 1014 Pfam Cation transporter/ATPase, N-terminus 116 185 IPR004014 -
Cmo07g00657 1014 Gene3D - 140 336 - -
Cmo07g00657 1014 ProSitePatterns E1-E2 ATPases phosphorylation site. 455 461 IPR018303 -
Cmo07g00657 1014 PANTHER CATION TRANSPORTING ATPASE 5 1013 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo03g00953 Cmo07g00657 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g00657 Cmo-Chr7:2953435 Cmo15g00812 Cmo-Chr15:4031016 0 dispersed
Cmo14g00552 Cmo-Chr14:2805352 Cmo07g00657 Cmo-Chr7:2953435 0 transposed
Cmo01g01844 Cmo-Chr1:13443728 Cmo07g00657 Cmo-Chr7:2953435 0 wgd
Cmo12g00543 Cmo-Chr12:3304011 Cmo07g00657 Cmo-Chr7:2953435 3.89E-74 wgd
Cmo03g00953 Cmo-Chr3:7164857 Cmo07g00657 Cmo-Chr7:2953435 0 wgd
Cmo07g00657 Cmo-Chr7:2953435 Cmo09g00282 Cmo-Chr9:1251997 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g00657 K01537 - csv:101212315 1857.03