Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g00660 ATGGGGAAGAAACAGCACAGTAAAGACCGTTTGTTTATTACGAAAACTGAATGGGCCACTGAATGGGGCGGAGCCAAATCCAAGGACAATCAAACCCCTTTCAAGCGGCTTCCCTTTTATTGCTGCGCGCTTACATTTACACCCTTTGAGGACCCTGTATGTACTGCCGATGGCAGCATCTTCGAGATAATTTTATTGTTCTTCATAACCATATTGGTACTCGGGTTCAGGAATATCATCCCTTATATTCGGAAGTACGGTAAAAATCCTGTTACTGGAGCTCCCCTGAAGCAGGAGGATCTTATTCCTCTGATTTTCCACAAGAACTCTGAAGGTGAGTTCCAGTGCCCTGTACTAAACAAAGTTTTTACCGAGTTCACTCACATAGTTGCTATAAAGACCACTGGAAATGTTTTCTGCTACGAGGCAATTAAAGAACTAAATATCAAGACAAAAAACTGGAAGGAACTTCTCACTGATGAACCATTTAGTAGGGAAGATATTATAACCATTCAGAACCCTACTGCACTTGATAGCAAGGTTCTCCTGGATTTTGATCATGTGAAAAAAAGCCTGAAAGTTGATAATGAAGAACTTCAGAAAATGAAATCAGATCCAACATATAACATAAATGTGTCGGGTGACATCAAGCAGATGTTGAAGGAACTTGGAACAGAAGAAGGAAGGCAAACTGCACTTCATGGGGGAGGTGGTGGCAAGGCACAGAAAGAAAGGGCAGCTGCCCTTGCTGCAATTTTAGAAGCTAGGTCACGCATCAAAGAAAATTCCAAGGAAAATGCAAAAGGAGAGGAGACACCTACTCAGGCATTTAGTATTGTGGATGCTGCATCTGCTTCAGTACATGGAAGAAGTGCAGCTGCTGCGAAAGCTGCTCCTAGTGAAAAAACTGCAGCTCGAATTGCCATGCACATGGCGGGTGAGAGGGCACCGGTGAATGCTAAGATGGTAAAGAGTCGTTACACTACTGGGGCTGCATCCCGATCCTTTACATCTACATCTTACGATCCTGTTACAAAGAATGAACACGAATATATCAAGGTTGAGAAAAATCCAAAGAAGAAAGGATATGTACAGTTGCACACAACTCATGGAGATTTGAATATTGAGCTGCATTGTGATATTACTCCAAGGGCATGTGAGAATTTCATCACACTGTGTGAAAATGGCTACTACAATGGAGTTGCTTTTCATAGAAGTATTAGGAATTTTATGATTCAAGGTGGTGATCCAACTGGTACTGGGAGAGGAGGTGAATCTATATGGGGAAAGCCCTTCAAAGATGAACTCAACTCCAAGTTGCTTCATTCTGGAAGGGGAATTGTCAGTATGGCAAATAGTGGTCCCCACACTAATGGTTCCCAGTTCTTTATTCTATACAAATCTGCCAATCATTTAAACTTCAAGCATACTGTATTTGGCGGTGTTGTTGGTGGTTTGACTGCTTTGGCAGCTATGGAAAAGGTTCCTGTTGATGACAATGATCGGCCTCTGGAGGAGATCAAGATTACAAGTGTCACAGTCTTTGTCAATCCATACTCGGAACCCGATGAAGAAGAAGAAAACAAGCAAAAAGACGAGAAGAATGTTGAAGATGAAGAAAACGATAAGGTTGGATCATGGTATAGCAACCCAGGCACCGGGGTAGCTGAAAATGGAGCTGCAGGTGGCGGTGTAGGGAAATACCTGAAAGCAAGGAATACCCAATCCAAACCCCCTGCTGTTGATGCTAGTCTAGGAGCAACTACCTCGACCAAGAAAAGGACAGCTGCAGGAGAGTTCAAAGACTTCTCTTCGTGGTAA 1821 42.94 MGKKQHSKDRLFITKTEWATEWGGAKSKDNQTPFKRLPFYCCALTFTPFEDPVCTADGSIFEIILLFFITILVLGFRNIIPYIRKYGKNPVTGAPLKQEDLIPLIFHKNSEGEFQCPVLNKVFTEFTHIVAIKTTGNVFCYEAIKELNIKTKNWKELLTDEPFSREDIITIQNPTALDSKVLLDFDHVKKSLKVDNEELQKMKSDPTYNINVSGDIKQMLKELGTEEGRQTALHGGGGGKAQKERAAALAAILEARSRIKENSKENAKGEETPTQAFSIVDAASASVHGRSAAAAKAAPSEKTAARIAMHMAGERAPVNAKMVKSRYTTGAASRSFTSTSYDPVTKNEHEYIKVEKNPKKKGYVQLHTTHGDLNIELHCDITPRACENFITLCENGYYNGVAFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDELNSKLLHSGRGIVSMANSGPHTNGSQFFILYKSANHLNFKHTVFGGVVGGLTALAAMEKVPVDDNDRPLEEIKITSVTVFVNPYSEPDEEEENKQKDEKNVEDEENDKVGSWYSNPGTGVAENGAAGGGVGKYLKARNTQSKPPAVDASLGATTSTKKRTAAGEFKDFSSW 606
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2969047 2973290 + CmoCh07G006600.1 Cmo07g00660 385968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g00660 606 MobiDBLite consensus disorder prediction 517 606 - -
Cmo07g00660 606 ProSiteProfiles U-box domain profile. 35 121 IPR003613 GO:0004842|GO:0016567
Cmo07g00660 606 SMART Ubox_2 39 114 IPR003613 GO:0004842|GO:0016567
Cmo07g00660 606 SUPERFAMILY Cyclophilin-like 363 532 IPR029000 -
Cmo07g00660 606 MobiDBLite consensus disorder prediction 577 594 - -
Cmo07g00660 606 CDD RING-Ubox_PPIL2 38 123 IPR026951 -
Cmo07g00660 606 CDD cyclophilin_RING 363 521 - -
Cmo07g00660 606 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 40 105 IPR013083 -
Cmo07g00660 606 MobiDBLite consensus disorder prediction 522 544 - -
Cmo07g00660 606 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 398 415 IPR020892 GO:0003755|GO:0006457
Cmo07g00660 606 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 446 461 IPR002130 GO:0000413|GO:0003755
Cmo07g00660 606 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 461 473 IPR002130 GO:0000413|GO:0003755
Cmo07g00660 606 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 377 392 IPR002130 GO:0000413|GO:0003755
Cmo07g00660 606 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 474 489 IPR002130 GO:0000413|GO:0003755
Cmo07g00660 606 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 403 415 IPR002130 GO:0000413|GO:0003755
Cmo07g00660 606 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 367 514 IPR002130 GO:0000413|GO:0003755
Cmo07g00660 606 SUPERFAMILY RING/U-box 37 117 - -
Cmo07g00660 606 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 363 514 IPR002130 GO:0000413|GO:0003755
Cmo07g00660 606 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 2 604 IPR044666 -
Cmo07g00660 606 Gene3D - 343 528 IPR029000 -
Cmo07g00660 606 PANTHER RING-TYPE E3 UBIQUITIN-PROTEIN LIGASE PPIL2 2 604 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01789 Cmo-Chr1:13196837 Cmo07g00660 Cmo-Chr7:2969047 9.54E-44 dispersed
Cmo06g01151 Cmo-Chr6:8822123 Cmo07g00660 Cmo-Chr7:2969047 1.04E-56 dispersed
Cmo07g00660 Cmo-Chr7:2969047 Cmo14g02050 Cmo-Chr14:14980576 1.57E-57 dispersed
Cmo11g02058 Cmo-Chr11:13924343 Cmo07g00660 Cmo-Chr7:2969047 4.94E-32 dispersed
Cmo03g00955 Cmo-Chr3:7176631 Cmo07g00660 Cmo-Chr7:2969047 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g00660 K10598 - csv:101204462 1035.02