Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g00661 ATGGATACCTTGTTTCGGCTTGTCAATCTTCAGTCCGAACAATCTTACAACTCCAGTAGAAGTAGAACCAATTCTAGCAGCTCTAGATCGTCTAGACAAAACCAATATCATTACCATCAACAGGAAGACGAAGAATGCTACAACGTTCTCATGGATGAGGAAAATTTCTCATCGTCTAGTAATTCTAGACAATACTACAATCCTTACCTTCCCAACCCATCTTCCACCGTCTCCACCACGCCCACCGCCACCACCCCAACCCCGATCGATCAATTCTCATTCGTCTCCCCCGCTCCGGATTTCAACTTCGAATTTTCCGGCAGGTGGGCCCCTGATATTCTCCTGGAAACCGCCAGGGCCATTTCTGACAGGAATAGTGCTCGTGTTCAGCAGCTGATGTGGATGCTAAACGAACTTAGCTCCCCCTATGGGGATACGGATCAAAAGCTAGCTGCCTATTTCCTGCAGGCCTTGTTTACCCGCATGACTGATTCCGGCGACCGTAATTATCGCGCTTTGTCCTCCGCCTCAGAGAAATCATGCTCATTCGAATCAACTAGGAAAATGATGCTCAAGTTTCAGGAGGTTAGTCCCTGGACCACTTTTGGGCATGTTTCTTGCAATGGCGCACTAATTGAAGCCTTAGAAGGCGAATCAAAGCTACACATAATCGATATCAGTAACACGTATTGCACTCAGTGGCCCACTTTGCTAGAAGCCCTCGCGACTCGTACCGACGATACGCCCCACCTACGCCTCACAACTGTCGTCATCACTAAACCCGGCGATGGAAGTGGAGTAGCCGCATCTCAAAAAGTAATGAAGGAAATAGGTACAAGAATGGAAAAGTTCGCTAGGCTTATGGGCGTACCTTTCAAATTCCACACGCTATACCATTCCGGTGACCTTTCAGATTTGGACTTGGCGAAATTAGACATCAAAGAAGACGAGGCACTCGCCGTCAACTGCATCGGAGCGTTACGTTCCGTGGCGGCAGTTGATAACCGCCGAGATTTCTTGATTGCATCTTTCCGCAGTTTACGGCCGCGGATAATCACGGTGATAGAAGAGGAAGCCGACCTCGACGTAGGCGTCGATGGGATTGAATTTCTGAGTGGGTTCCAAGAATGTCTGCGTTGGTTTAGGGTTTACTTCGAGACATTGGACGAGAGTTTCACGAGGACAAGCAACGAGCGGTTGATGCTTGAGAGAGCAGCCGGTAGGGCAATCGTGGACCTGGTGGCTTGCTCGGCAGCGGAGTCGGTGGAGAGAAGGGAATCGGCAGCTCGGTGGGCACAGCGGTTGCATGGAAGCGGTTTCAGTCCGCTGATATTCAGCGACGAAGTATGCGACGACGTAAGGGCACTATTGAGGAGGTACAAGGAAGGGTGGGCAATGACACAGAGCTCGGACGTCGCCGGAATATTCTTGACGTGGAAAGAGCAGCCGGTGGTGTGGGCCAGTGCATGGAAACCTTGA 1479 50.44 MDTLFRLVNLQSEQSYNSSRSRTNSSSSRSSRQNQYHYHQQEDEECYNVLMDEENFSSSSNSRQYYNPYLPNPSSTVSTTPTATTPTPIDQFSFVSPAPDFNFEFSGRWAPDILLETARAISDRNSARVQQLMWMLNELSSPYGDTDQKLAAYFLQALFTRMTDSGDRNYRALSSASEKSCSFESTRKMMLKFQEVSPWTTFGHVSCNGALIEALEGESKLHIIDISNTYCTQWPTLLEALATRTDDTPHLRLTTVVITKPGDGSGVAASQKVMKEIGTRMEKFARLMGVPFKFHTLYHSGDLSDLDLAKLDIKEDEALAVNCIGALRSVAAVDNRRDFLIASFRSLRPRIITVIEEEADLDVGVDGIEFLSGFQECLRWFRVYFETLDESFTRTSNERLMLERAAGRAIVDLVACSAAESVERRESAARWAQRLHGSGFSPLIFSDEVCDDVRALLRRYKEGWAMTQSSDVAGIFLTWKEQPVVWASAWKP 492
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2976038 2977516 + CmoCh07G006610.1 Cmo07g00661 385969
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g00661 492 Pfam GRAS domain family 113 491 IPR005202 -
Cmo07g00661 492 MobiDBLite consensus disorder prediction 58 84 - -
Cmo07g00661 492 ProSiteProfiles GRAS family profile. 101 491 IPR005202 -
Cmo07g00661 492 PANTHER PROTEIN SHORT-ROOT 1 491 IPR030019 GO:0003700|GO:0005634|GO:0008356|GO:0009956|GO:0043565|GO:0048366
Cmo07g00661 492 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 1 491 IPR005202 -
Cmo07g00661 492 MobiDBLite consensus disorder prediction 13 35 - -
Cmo07g00661 492 MobiDBLite consensus disorder prediction 13 41 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00551 Cmo-Chr2:3125396 Cmo07g00661 Cmo-Chr7:2976038 0 dispersed
Cmo07g00661 Cmo-Chr7:2976038 Cmo17g00596 Cmo-Chr17:6345899 2.14E-149 dispersed
Cmo08g00767 Cmo-Chr8:4842017 Cmo07g00661 Cmo-Chr7:2976038 3.36E-42 dispersed
Cmo07g00661 Cmo-Chr7:2976038 Cmo07g00670 Cmo-Chr7:3023876 2.04E-54 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10130 PF03514 GRAS 2.10E-102 CL0063 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g00661 - - csv:101204711 848.58