Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g00669 ATGAGCTGCAACGGTTGCCGCGTTCTCCGAAAGGGCTGCAGTGAGTCCTGTATTCTCCGCCCTTGCTTGCAGTGGATTGACACCTCTGAAGCCCAAGGCCACGCTACTGTCTTTGTCGCTAAGTTCTTCGGCCGCGCCGGTCTTATGTCTTTCATCTCCGCCGTCCCTGAATCTCAACGACCTTCTTTGTTTCAGTCTTTGCTGTTTGAAGCCTGTGGTCGTACTGTCAATCCGGTCAACGGCGCCGTTGGTCTTCTCTGGACTGGAAACTGGCATATCTGTCAGGCGGCGGTGGAGACTGTGTTACGAGGCGGTACGTTGCGGCCGATGAATGAGTTTCTCGCCGCTGGATCTCCTAATCCGGCTTCCGATGAAACGTCCGAGGCTGAAGTCGCCTGTACCGACATGTGGAAGCTTCGAGATTCTTATCCAAATTCTCGATTCTCTAACTCCCGATCCAGACTCTCCCCAAAACGTAAACGATCCGAGGAATCCACAAAAAACCAACTAAACGACTTAGATCTCCGTTTAACGCCGAATTTTCCGGCGAAATCAACCCGGCGTGCCGCTACTCCGTCGATGAATTCCGAGGAATCCGAAACCACTACGTGCTTTGAGAGCGGCGGCTTGGTTGATCATCATCATCGCAACTACCATCCAGAAGAACTGGTACCGGAACGGAAACTTCTCAATTTATTCGTCTAA 705 52.06 MSCNGCRVLRKGCSESCILRPCLQWIDTSEAQGHATVFVAKFFGRAGLMSFISAVPESQRPSLFQSLLFEACGRTVNPVNGAVGLLWTGNWHICQAAVETVLRGGTLRPMNEFLAAGSPNPASDETSEAEVACTDMWKLRDSYPNSRFSNSRSRLSPKRKRSEESTKNQLNDLDLRLTPNFPAKSTRRAATPSMNSEESETTTCFESGGLVDHHHRNYHPEELVPERKLLNLFV 234
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3018288 3020079 + CmoCh07G006690.1 Cmo07g00669 385977
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g00669 234 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1 234 - -
Cmo07g00669 234 MobiDBLite consensus disorder prediction 144 203 - -
Cmo07g00669 234 MobiDBLite consensus disorder prediction 184 203 - -
Cmo07g00669 234 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Cmo07g00669 234 MobiDBLite consensus disorder prediction 156 170 - -
Cmo07g00669 234 Pfam Lateral organ boundaries (LOB) domain 2 101 IPR004883 -
Cmo07g00669 234 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 234 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g00669 Cmo-Chr7:3018288 Cmo14g00825 Cmo-Chr14:4272280 8.39E-54 dispersed
Cmo01g01851 Cmo-Chr1:13487541 Cmo07g00669 Cmo-Chr7:3018288 4.88E-63 wgd
Cmo03g00962 Cmo-Chr3:7221792 Cmo07g00669 Cmo-Chr7:3018288 1.85E-154 wgd
Cmo07g00669 Cmo-Chr7:3018288 Cmo09g00275 Cmo-Chr9:1210913 6.51E-60 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10133 PF03195 LOB 1.90E-25 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g00669 - - csv:101206615 399.053