Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g00670 ATGAATAATCAAAGCCCAATTACAGTCCCTCGACGCCGCCCATGGCCTGGATTGTTCGCGTCTTCTTCTTCTTCTTCCTCCAAAGCTTTGGGAACTTGGTTGGGTGAGGACGCCAATTGCATGGAACGCTTGTTGGTTCACTGCGCCAACGCTATTGAATCCAACGACGCTACTCTCGCCCAACAAATCCTTTGGGTCCTCAACAACATTGCCACTCCTGATGGCGACTCCAACCAACGCCTTGCCTCTGCTTTCCTACGCGCTCTTGTAACACGCGCTGCCAACATTGGCAGCTGTAAAATCCTCGCTGCCATCACCACCGCAGCTACCTCCTCCCTCACTACTCACTCCTTCTCCCTCATGGACCTCGCCACCTTCGTCGACTTAACCCCCTGGTACCGCTTTGGCTTCACGACTGCAAATGCGGCGATTCTCGACGCCATCGAAGGCTACTCTGCCGTCCATGTCGTCGATTTCAGCTTGATGCATTGCATGCAAATCCCCACTCTCATCGACGCTATCGCTACTCGTTTCGAGTTCCCCCCTCTACTCAAACTCACCACGGTTGTCGTAAAACACGCGCCGCCCTTGCTCGAGCTGTCGTACGAGGAATTAGGAGCGAAATTGGTGAATTTTGCAAGGTCAAAAAACGTGAGAATGGAATTTAGATTTGTGGAGTCTTGCTACACCGATGGATTTTCCAATTTAATCCAAGAAATTCGAGTGCAAAATTTAATTTACGGACCCGAAAGTAAGGAAGCGCTGATTTTAAACTGTCACATGATGCTCCATTACATCCCTGAAGAAACATTAAACCCAAACCCATCTCCCAATTTCGACATGTCGTCTTCAACTCGTTCGATGTTTCTCAAGGAAATCCGAAGCTTAGAGCCAGCGATTGTGATTCTAGTCGATGAGGAAGCCGATTTCACGGCGAGTAAAATGGTGAGTCGATTGAGATCGGCGTTTAATTACTTATGGATACCGTACGACTCGATGGATTCGATTCTTCCGAGGAACAGCAAGCAGAGGGAATGGTACGAGGCCGGGATTTGTCGGAAGATTGAGAATGTGATTGCTGAGGAGGGGATTGAGAGAGTGGAACGATTGGAGCCGAAGACGCGGTGGGTTCAACGGATGCTGAACTCCAAATTCCGAGGGGTTGGGTTCGGAGACGACGCGGTTTCGGAGGTGAAGACGATGCTCGACGAGCATGCAGCGGGATGGGGGTTGAAGAAGGAAGACGACCACCTCCTCCTCACATGGAAGGGCCACGACGTCGTTTTCGCCACGGCTTGGGTACCTTGCTAA 1311 50.8 MNNQSPITVPRRRPWPGLFASSSSSSSKALGTWLGEDANCMERLLVHCANAIESNDATLAQQILWVLNNIATPDGDSNQRLASAFLRALVTRAANIGSCKILAAITTAATSSLTTHSFSLMDLATFVDLTPWYRFGFTTANAAILDAIEGYSAVHVVDFSLMHCMQIPTLIDAIATRFEFPPLLKLTTVVVKHAPPLLELSYEELGAKLVNFARSKNVRMEFRFVESCYTDGFSNLIQEIRVQNLIYGPESKEALILNCHMMLHYIPEETLNPNPSPNFDMSSSTRSMFLKEIRSLEPAIVILVDEEADFTASKMVSRLRSAFNYLWIPYDSMDSILPRNSKQREWYEAGICRKIENVIAEEGIERVERLEPKTRWVQRMLNSKFRGVGFGDDAVSEVKTMLDEHAAGWGLKKEDDHLLLTWKGHDVVFATAWVPC 436
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3023876 3025186 + CmoCh07G006700.1 Cmo07g00670 385978
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g00670 436 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 11 434 IPR005202 -
Cmo07g00670 436 MobiDBLite consensus disorder prediction 1 27 - -
Cmo07g00670 436 PANTHER SCARECROW-LIKE PROTEIN 32 11 434 - -
Cmo07g00670 436 Pfam GRAS domain family 42 433 IPR005202 -
Cmo07g00670 436 ProSiteProfiles GRAS family profile. 32 434 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g00670 Cmo-Chr7:3023876 Cmo19g00971 Cmo-Chr19:8774120 4.87E-109 dispersed
Cmo07g00661 Cmo-Chr7:2976038 Cmo07g00670 Cmo-Chr7:3023876 2.04E-54 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10134 PF03514 GRAS 6.00E-94 CL0063 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g00670 - - cmos:111453455 708.368