Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g00686 ATGGAAATTATGACTCTTGAAAAGTTGAAAGAGAATGATGAACGAATTCAAAGTACAGGAGAAGCTGAACATGTTGATGAAATGCATCTCAGAACTCACGGGCATGAACATATAATTACAGTAGAAAAATCCCGAAGCTGCAGCCCAATTCCAATAGTAAACACTAATATAATATCAAATTTCAGCAGAAAGGTACAAATTTCAAGTTTGTATGGGGGGTTGCCAGTCACAAGCTCAGAAGATCGTCCCAATTGCATGTCCAATGAAAAATCTCAAGTTCATGATGGTGTTTTCTCTGACTCCAATGCTAATCCTACTTTTGCGCAAGTTATATCTAGAGAGACAACTGGCACCGCTTCACCTGTGTTATCAATTGGACGAGCAAGTTTCACCAGGGGTACTTCTGAGAAAGTAAGATCTGAGCCATCAGTTTCTGTGACTCCATCCCTCTCACAAGTCGAACCCCAATTTCCACTCAGATTGTCTGTGGATAGAAAAAGTGGTATAATTGGACAACAGCCACAGAAACTTCCTGAAGTTGTTTGTTCTTCTGAGATTGAGCCCAGATCTGATTTAGGAAGTGCTGAAGCCAGAGTTCAGAAGTTGGTCGAGAACTTGAATAGCAATTCACTTGAAACTATTAGAGCTGCAATAGCTGAACTCCGAAGTCTTGCGAAACTTAATACTGATAACCGGATTATGATTACAGAACATGGAGCAATCAGCTTTTTGGTTAAATTGCTATATTCTACAGATGCAATAGTTCAAGAGCATGCTGTTACAACACTTCTCAACCTATCAATCTATGAAGACAACAGAATTGCCATTGCTCAGGCCGATGTAATTGAACCTCTAATTCACGTCCTTGGTACAGGAACCCCTGAAGCTAAGGAGAACGCAGCTGCCACTTTCTTTAGCCTTGCTATGGTGGAGGAAAACAGGGTAAAGATTGGGAGGTCTGAGGCCATTGGGCCTCTGGTTGAACTACTAGGGAATGGGACTCCTAGGGGAAGGAAAGATGCAACAACTGCATTATTTTATCTGTCTATGCTTCCAGAGAACAAGGTCAAGATTGTGCAAGCTGGAGCTGTACAGCATCTTGTGGAGTTGATGGATCCATCAATTGGAATGGGTGACAAGACAGTTGCTGTTCTAGCAAATCTTTCTACAATCCAGGAGGGGAAGGTTGAAATTGGTAGGGGTGGTGGGATCCCTGTGTTGGTCGAGGCTATTGAATTGGGTTCTGCTAGAGGAAAAGAGAATGCAGCAGCTGCACTACTACGGATCTGCTCATCCTCTAATAAATTTTGCATCATGGCTATCCAAGAAGGAATTATCCCACCCTTAGTGGCGTTGTCTCAATCTGGAACTACGAGGGCCAAGGATAAGGCTCAGGCACTGCTTAGCCTCTTCAGAAAGCATGTGCATAGTAATGTTGAAGAAGTCCACTAA 1452 42.7 MEIMTLEKLKENDERIQSTGEAEHVDEMHLRTHGHEHIITVEKSRSCSPIPIVNTNIISNFSRKVQISSLYGGLPVTSSEDRPNCMSNEKSQVHDGVFSDSNANPTFAQVISRETTGTASPVLSIGRASFTRGTSEKVRSEPSVSVTPSLSQVEPQFPLRLSVDRKSGIIGQQPQKLPEVVCSSEIEPRSDLGSAEARVQKLVENLNSNSLETIRAAIAELRSLAKLNTDNRIMITEHGAISFLVKLLYSTDAIVQEHAVTTLLNLSIYEDNRIAIAQADVIEPLIHVLGTGTPEAKENAAATFFSLAMVEENRVKIGRSEAIGPLVELLGNGTPRGRKDATTALFYLSMLPENKVKIVQAGAVQHLVELMDPSIGMGDKTVAVLANLSTIQEGKVEIGRGGGIPVLVEAIELGSARGKENAAAALLRICSSSNKFCIMAIQEGIIPPLVALSQSGTTRAKDKAQALLSLFRKHVHSNVEEVH 483
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3089791 3092177 - CmoCh07G006860.1 Cmo07g00686 385994
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g00686 483 PANTHER U BOX DOMAIN-CONTAINING 152 474 - -
Cmo07g00686 483 PANTHER U BOX DOMAIN-CONTAINING 1 53 - -
Cmo07g00686 483 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 239 281 IPR000225 GO:0005515
Cmo07g00686 483 SMART arm_5 228 268 IPR000225 GO:0005515
Cmo07g00686 483 SMART arm_5 269 309 IPR000225 GO:0005515
Cmo07g00686 483 SMART arm_5 310 350 IPR000225 GO:0005515
Cmo07g00686 483 SMART arm_5 391 431 IPR000225 GO:0005515
Cmo07g00686 483 SMART arm_5 351 390 IPR000225 GO:0005515
Cmo07g00686 483 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 152 474 - -
Cmo07g00686 483 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 53 - -
Cmo07g00686 483 SUPERFAMILY ARM repeat 199 479 IPR016024 -
Cmo07g00686 483 Pfam Armadillo/beta-catenin-like repeat 228 267 IPR000225 GO:0005515
Cmo07g00686 483 Gene3D - 183 482 IPR011989 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g00518 Cmo07g00686 CCT
Cmo07g00686 Cmo20g00999 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00518 Cmo-Chr2:2887263 Cmo07g00686 Cmo-Chr7:3089791 1.98E-141 dispersed
Cmo07g00686 Cmo-Chr7:3089791 Cmo20g00999 Cmo-Chr20:5999322 3.15E-135 dispersed
Cmo07g00683 Cmo-Chr7:3085127 Cmo07g00686 Cmo-Chr7:3089791 4.42E-120 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g00686 - K08332 csv:101214725 638.262