Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmo07g00697 | ATGGATAATGGAACTTCTAATAGTCCAACACAATCTGCAGTCAATAATCCAGCTCCTACTGTCCATGGGCAAAATAGTACAGGAGACCATTTGACATCTATTTTATCTCCGTCTGGAATATCATCTTGGGCTAAGAGTTTTAGAAATCCACAACCGCCTGAAGCAGCAGAAAATGACTCTAAGGCAGGAAATGCTGGGATGTCAGCAATTGCTCGTTTCAGTAGTGGCTTTGGATTGCGGATGCCTTCAATGTCTGCTGTACGAGATGATACTGCCGCAGATACCAAAGCAGCAGCGCAATCTGATGTTTTCAAATCAATCACAAAAGGTTTAGTTGACACATCTCAGAATGCAGTAAAGGCTATGCAGGTAAAGGCACGCCATATTGTATCTCAGAACAAACGAAGATATCAGGAAGGAGAATTTGATTTGGATATGACATATATCACTGAAAATATAATCGGTATGGGGTTTCCTGCTGGTCACATGAGCTCCGGTTTATTTGGTTTCATTGAGGGATTTTACAGAAATCATATGGAAGAAGTGATCAAATTTTTTGAAACTCATCATAAGGGAAAATACAAAGTTTACAATCTTTGCTCAGAGCGTTTGTATGATGCCTCATTATTTGAGGGGAAGGTAAGCTTTCAATTTTCAGGTCTTCAATTGAGCATCCTCACTAATATCAATTATAGTCAACGTTTAGGGAATGTGTATGATCCACTGACCCAAAATAATTTCTTACCTGTAAATGTTGCACATTTTCCGTTTGATGATCATAATTGTCCTCCTATCCATCTCATAAAATCATTTTGTCTAAGTGCTTATGCATGGTTAAAGGAGGATATTGAGAATGTGGTTGTTGTTCATTGTAAAGCTGGTATGGCACGAACAGGGCTAATGATTTGCAGCCTCCTTTTATTTCTAAAGTTCTTCCATACGTCAGCAGAAGCAATTGACTATTATAATCAGAAAAGATGCGTGGATGGAAAGGCTTTGGTTCTTCCTAGCCAGATTAGGTATGTCAAATACTTTGAGCGCATTTTAATACATTTCAACGGAAATACTCCACCAGGACGGAGGTGCATGCTGAGAGGTTTTCGGCTTCACAAGTGCCCGTATTGGGTTAGGCCTTCGATTACAATTTCAAATCACAGTGAGATTTTGTTCTCAACAAAAAAGCATCCAAAGACAAAGGATTTGATGCCAGAAGATTTCTGGATTAGAGCACCAAAGAAAGGATTTGTAGTCTTTGCACTGCCAGGTGAGCCTGGTTTGACAGAGTTGTCTGGGGACTTTAAGATTCATTTTCATGACCGCCATGGAGATTTTTATTGGTTAGTTAATTTCTGGTCACCTCCAATCTTTTGGTTAAATACAACAATGACAGAAAACAAAGTATTATTAAGCGACACAGATCTTGATGGTTTTGATAAGAGAAAACTTCCTACTCCTGGATTCCAGGTCGAGGTTGTGATGATAGACTATAATGGTACTTTGCCAACACGATCGAAAACTAATTCTGCTGGCAAAGGATCTGATTGTCGTCCTATTCATGATCGGGTTCCAGGTCATGAGGCGGCACAATCGAGCAAAGACAAAATTCCTGAGAGTGAAGAAAATGATGATGTATTCTCTGATAGTGATGAAGAAAATGGTGACACAAAAACTGGTCTAGCTCAATCAACTTCTGAAACTGCAAAAGTTGACCATTCATCAACAGCAATTTCTTCTGATAAAATTGGGAGTTTAGCGCGGGAAACAAATCATTTGTCACTTGGGAATGAGAGAAATCTACAAATCAATGCTCCAAAAGAACCAAACATTGGTGGCATGATACAACCGTCAGGCCTTGAGACCCCAAATATGGATTCGGCAAGCGCAAGTGAATTCAAAGCAATAGCCGCTGATGCATCAGTTTTCACTTTTGGGGATGAAGAAGACTTTGATAGTGAATGA | 1959 | 39.56 | MDNGTSNSPTQSAVNNPAPTVHGQNSTGDHLTSILSPSGISSWAKSFRNPQPPEAAENDSKAGNAGMSAIARFSSGFGLRMPSMSAVRDDTAADTKAAAQSDVFKSITKGLVDTSQNAVKAMQVKARHIVSQNKRRYQEGEFDLDMTYITENIIGMGFPAGHMSSGLFGFIEGFYRNHMEEVIKFFETHHKGKYKVYNLCSERLYDASLFEGKVSFQFSGLQLSILTNINYSQRLGNVYDPLTQNNFLPVNVAHFPFDDHNCPPIHLIKSFCLSAYAWLKEDIENVVVVHCKAGMARTGLMICSLLLFLKFFHTSAEAIDYYNQKRCVDGKALVLPSQIRYVKYFERILIHFNGNTPPGRRCMLRGFRLHKCPYWVRPSITISNHSEILFSTKKHPKTKDLMPEDFWIRAPKKGFVVFALPGEPGLTELSGDFKIHFHDRHGDFYWLVNFWSPPIFWLNTTMTENKVLLSDTDLDGFDKRKLPTPGFQVEVVMIDYNGTLPTRSKTNSAGKGSDCRPIHDRVPGHEAAQSSKDKIPESEENDDVFSDSDEENGDTKTGLAQSTSETAKVDHSSTAISSDKIGSLARETNHLSLGNERNLQINAPKEPNIGGMIQPSGLETPNMDSASASEFKAIAADASVFTFGDEEDFDSE | 652 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 3149293 | 3153780 | - | CmoCh07G006970.1 | Cmo07g00697 | 386005 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmo07g00697 | 652 | SUPERFAMILY | (Phosphotyrosine protein) phosphatases II | 143 | 349 | IPR029021 | - | |
| Cmo07g00697 | 652 | ProSiteProfiles | Phosphatase tensin-type domain profile. | 135 | 352 | IPR029023 | - | |
| Cmo07g00697 | 652 | ProSiteProfiles | Tyrosine specific protein phosphatases domain profile. | 287 | 326 | IPR000387 | GO:0016311|GO:0016791 | |
| Cmo07g00697 | 652 | ProSitePatterns | Tyrosine specific protein phosphatases active site. | 289 | 299 | IPR016130 | GO:0016311|GO:0016791 | |
| Cmo07g00697 | 652 | MobiDBLite | consensus disorder prediction | 1 | 48 | - | - | |
| Cmo07g00697 | 652 | PANTHER | PHOSPHATIDYLINOSITOL 3,4,5-TRISPHOSPHATE 3-PHOSPHATASE AND PROTEIN-TYROSINE-PHOSPHATASE PTEN2B | 251 | 652 | - | - | |
| Cmo07g00697 | 652 | MobiDBLite | consensus disorder prediction | 555 | 602 | - | - | |
| Cmo07g00697 | 652 | MobiDBLite | consensus disorder prediction | 514 | 541 | - | - | |
| Cmo07g00697 | 652 | MobiDBLite | consensus disorder prediction | 1 | 63 | - | - | |
| Cmo07g00697 | 652 | ProSiteProfiles | C2 tensin-type domain profile. | 359 | 496 | IPR014020 | - | |
| Cmo07g00697 | 652 | Gene3D | Protein tyrosine phosphatase superfamily | 120 | 355 | IPR029021 | - | |
| Cmo07g00697 | 652 | MobiDBLite | consensus disorder prediction | 500 | 625 | - | - | |
| Cmo07g00697 | 652 | PANTHER | PHOSPHATIDYLINOSITOL 3,4,5-TRISPHOSPHATE 3-PHOSPHATASE AND PROTEIN-TYROSINE-PHOSPHATASE PTEN2B | 7 | 218 | - | - | |
| Cmo07g00697 | 652 | PANTHER | PHOSPHATASE WITH HOMOLOGY TO TENSIN | 7 | 218 | - | - | |
| Cmo07g00697 | 652 | PANTHER | PHOSPHATASE WITH HOMOLOGY TO TENSIN | 251 | 652 | - | - | |
| Cmo07g00697 | 652 | SMART | PTEN_C2_2 | 357 | 495 | IPR014020 | - | |
| Cmo07g00697 | 652 | CDD | PTP_PTEN | 145 | 348 | IPR045101 | GO:0016791 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmo07g00697 | Cmo-Chr7:3149293 | Cmo11g01191 | Cmo-Chr11:6958706 | 6.09E-37 | dispersed | |
| Cmo11g01384 | Cmo-Chr11:9670549 | Cmo07g00697 | Cmo-Chr7:3149293 | 0 | wgd | |
| Cmo19g00605 | Cmo-Chr19:6699930 | Cmo07g00697 | Cmo-Chr7:3149293 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmo07g00697 | K01110 | - | csv:101213277 | 1003.05 |