Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g00709 ATGTGGGATCTGAACGATTGTCCGGATGAGAGGAAGGAGGATGAATCGGAAGGGTGTTGGTCAGCGAAGACTTGGATTGAGGGAGAGGGGGAAGAGGAGAAGGGGAAAAGAGTGGGATCCGTTTCCAATTCCAGTTCTTCCGCGGTGCTTGTGGAGGATGGATCGGATGAAGATGCGCCCACCCCCAACGCATTACTCATGCAAATTAACGCACCCAGTCCCGTCACTCGCCAGTTTTTCCCACTCCAACACCCTCAAATCTCTTCTTCTTCTTCTTCTCCTTCTCCAACTACTGCTTCTACCTTCCCTCAGGCTCACTGGGTTGGGGTCAAATTTGGGCATCCCGATCCTTTTGCCGCACCTGCTCCTCCTAATTCCATCAAGTCCACCGAGATTTCCCAGCCCATTAAGAAGAGCCGCCGCGGACCCAGGTCCCGTAGCTCTCAGTACCGCGGCGTCACTTTCTACCGGAGAACCGGCCGTTGGGAGTCACATATATGGGATTGTGGAAAGCAGGTTTATCTGGATTTGGTTTTCTCCTCCGCGTCAAATGAATTGGTTACAGGTGGATTCGATACGGCACATGCAGCTGCTCGTGCTTACGATAGAGCGGCCATTAAATTCCGCGGAGTGGAAGCGGACATAAACTTCAGCATCGAAGATTACGAGGAGGATTTAAAACAGATGGGAAATCTAACGAAGGAGGAATTTGTGCATGTACTTCGCCGACAGAGCACTGGGTTTCCCAGAGGAAGCTCCAAGTATAGAGGCGTAACGCTTCACAAGTGCGGAAGATGGGAGGCCAGAATGGGCCAATTTCTTGGCAAAAAGTATGTCTATTTGGGTTTGTTTGATACGGAAATTGAAGCTGCAAGAAAAAAAAAAAGAAAAGAAATAATGAATGATGATGATGATGATAACGATAGGGCTTATGATAAAGCTGCAATCAAGTGTAATGGCAAGGAAGCTGTGACTAATTTCGATCCCAGCATCTATCAGAATGAACTGAATCCTATAAGTGATTCAACCGCCAATTTGGGAGATCACAGTCTTGATTTGAGTTTGGGAAATTCAAGCTCAAACCAAAACGACACCCCGAAGCCTTCCATAGATCCCCACCATTCTTCTTCTTCTTCAGCTCCTCTGTCCATGGAAGACGACTGGCAACGCACTCAAGGATTTAGGCGTCCTCAGCTAAATTTGGTAGAAGAATCAAGTGGAGCAGGTGGAAATAAACATTTGAAGGCAGCAGAGGGAAGAAATAATCGGTACCTGGAGAGTGAAACGATGCAGCGTCTAAGCCAAACGCACATTCAATCTCCGGCTTCATTTGAAATGCAAAGACACGCCCAATTCAGCCGGCAGGTGGCGGGTGGAGATCACAATCACAATCACAATCCAACCCTCAATTATCAAGTGGGTGCTACTGCTTTAACTATATATGCACATATTCAGTTTGGGGGCAGCAGTAATGGTGGAGGAGGGCGAATAGGAAGCGATCTATCACTGTCTCTAAATGATCATAATCAAGTTGTTGATTATTCGGGGCCATCTCAAGCTCTTGCAACTGCTGCAGCATCATCAGGATTCGCACCCCCTTCCAAAAACTGGCTGCACAACAATGGGTTTCACTGTCTTATGAGGCCCTCCTGA 1653 47.73 MWDLNDCPDERKEDESEGCWSAKTWIEGEGEEEKGKRVGSVSNSSSSAVLVEDGSDEDAPTPNALLMQINAPSPVTRQFFPLQHPQISSSSSSPSPTTASTFPQAHWVGVKFGHPDPFAAPAPPNSIKSTEISQPIKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLDLVFSSASNELVTGGFDTAHAAARAYDRAAIKFRGVEADINFSIEDYEEDLKQMGNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARKKKRKEIMNDDDDDNDRAYDKAAIKCNGKEAVTNFDPSIYQNELNPISDSTANLGDHSLDLSLGNSSSNQNDTPKPSIDPHHSSSSSAPLSMEDDWQRTQGFRRPQLNLVEESSGAGGNKHLKAAEGRNNRYLESETMQRLSQTHIQSPASFEMQRHAQFSRQVAGGDHNHNHNPTLNYQVGATALTIYAHIQFGGSSNGGGGRIGSDLSLSLNDHNQVVDYSGPSQALATAAASSGFAPPSKNWLHNNGFHCLMRPS 550
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3197835 3200572 + CmoCh07G007090.1 Cmo07g00709 386017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g00709 550 MobiDBLite consensus disorder prediction 113 149 - -
Cmo07g00709 550 MobiDBLite consensus disorder prediction 1 62 - -
Cmo07g00709 550 SUPERFAMILY DNA-binding domain 253 330 IPR016177 GO:0003677
Cmo07g00709 550 SUPERFAMILY DNA-binding domain 148 219 IPR016177 GO:0003677
Cmo07g00709 550 ProSiteProfiles AP2/ERF domain profile. 254 328 IPR001471 GO:0003700|GO:0006355
Cmo07g00709 550 MobiDBLite consensus disorder prediction 1 38 - -
Cmo07g00709 550 Pfam AP2 domain 253 294 IPR001471 GO:0003700|GO:0006355
Cmo07g00709 550 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 58 - -
Cmo07g00709 550 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 73 548 - -
Cmo07g00709 550 PANTHER AP2 DOMAIN TRANSCRIPTION FACTOR 1 58 - -
Cmo07g00709 550 PANTHER AP2 DOMAIN TRANSCRIPTION FACTOR 73 548 - -
Cmo07g00709 550 PRINTS Ethylene responsive element binding protein signature 310 330 IPR001471 GO:0003700|GO:0006355
Cmo07g00709 550 PRINTS Ethylene responsive element binding protein signature 255 266 IPR001471 GO:0003700|GO:0006355
Cmo07g00709 550 MobiDBLite consensus disorder prediction 343 386 - -
Cmo07g00709 550 ProSiteProfiles AP2/ERF domain profile. 149 218 IPR001471 GO:0003700|GO:0006355
Cmo07g00709 550 Gene3D AP2/ERF domain 148 220 IPR036955 GO:0003700|GO:0006355
Cmo07g00709 550 Gene3D AP2/ERF domain 253 329 IPR036955 GO:0003700|GO:0006355
Cmo07g00709 550 SMART rav1_2 254 334 IPR001471 GO:0003700|GO:0006355
Cmo07g00709 550 SMART rav1_2 149 224 IPR001471 GO:0003700|GO:0006355
Cmo07g00709 550 MobiDBLite consensus disorder prediction 343 388 - -
Cmo07g00709 550 CDD AP2 253 330 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo03g00985 Cmo07g00709 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00534 Cmo-Chr2:3034021 Cmo07g00709 Cmo-Chr7:3197835 8.76E-114 dispersed
Cmo06g00342 Cmo-Chr6:1658640 Cmo07g00709 Cmo-Chr7:3197835 1.09E-07 dispersed
Cmo07g00709 Cmo-Chr7:3197835 Cmo20g00493 Cmo-Chr20:2325892 2.81E-98 dispersed
Cmo03g00985 Cmo-Chr3:7417465 Cmo07g00709 Cmo-Chr7:3197835 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10137 PF00847 AP2 2.30E-06 CL0081 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g00709 K09284 - csv:101214724 585.489