Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo07g00709 | ATGTGGGATCTGAACGATTGTCCGGATGAGAGGAAGGAGGATGAATCGGAAGGGTGTTGGTCAGCGAAGACTTGGATTGAGGGAGAGGGGGAAGAGGAGAAGGGGAAAAGAGTGGGATCCGTTTCCAATTCCAGTTCTTCCGCGGTGCTTGTGGAGGATGGATCGGATGAAGATGCGCCCACCCCCAACGCATTACTCATGCAAATTAACGCACCCAGTCCCGTCACTCGCCAGTTTTTCCCACTCCAACACCCTCAAATCTCTTCTTCTTCTTCTTCTCCTTCTCCAACTACTGCTTCTACCTTCCCTCAGGCTCACTGGGTTGGGGTCAAATTTGGGCATCCCGATCCTTTTGCCGCACCTGCTCCTCCTAATTCCATCAAGTCCACCGAGATTTCCCAGCCCATTAAGAAGAGCCGCCGCGGACCCAGGTCCCGTAGCTCTCAGTACCGCGGCGTCACTTTCTACCGGAGAACCGGCCGTTGGGAGTCACATATATGGGATTGTGGAAAGCAGGTTTATCTGGATTTGGTTTTCTCCTCCGCGTCAAATGAATTGGTTACAGGTGGATTCGATACGGCACATGCAGCTGCTCGTGCTTACGATAGAGCGGCCATTAAATTCCGCGGAGTGGAAGCGGACATAAACTTCAGCATCGAAGATTACGAGGAGGATTTAAAACAGATGGGAAATCTAACGAAGGAGGAATTTGTGCATGTACTTCGCCGACAGAGCACTGGGTTTCCCAGAGGAAGCTCCAAGTATAGAGGCGTAACGCTTCACAAGTGCGGAAGATGGGAGGCCAGAATGGGCCAATTTCTTGGCAAAAAGTATGTCTATTTGGGTTTGTTTGATACGGAAATTGAAGCTGCAAGAAAAAAAAAAAGAAAAGAAATAATGAATGATGATGATGATGATAACGATAGGGCTTATGATAAAGCTGCAATCAAGTGTAATGGCAAGGAAGCTGTGACTAATTTCGATCCCAGCATCTATCAGAATGAACTGAATCCTATAAGTGATTCAACCGCCAATTTGGGAGATCACAGTCTTGATTTGAGTTTGGGAAATTCAAGCTCAAACCAAAACGACACCCCGAAGCCTTCCATAGATCCCCACCATTCTTCTTCTTCTTCAGCTCCTCTGTCCATGGAAGACGACTGGCAACGCACTCAAGGATTTAGGCGTCCTCAGCTAAATTTGGTAGAAGAATCAAGTGGAGCAGGTGGAAATAAACATTTGAAGGCAGCAGAGGGAAGAAATAATCGGTACCTGGAGAGTGAAACGATGCAGCGTCTAAGCCAAACGCACATTCAATCTCCGGCTTCATTTGAAATGCAAAGACACGCCCAATTCAGCCGGCAGGTGGCGGGTGGAGATCACAATCACAATCACAATCCAACCCTCAATTATCAAGTGGGTGCTACTGCTTTAACTATATATGCACATATTCAGTTTGGGGGCAGCAGTAATGGTGGAGGAGGGCGAATAGGAAGCGATCTATCACTGTCTCTAAATGATCATAATCAAGTTGTTGATTATTCGGGGCCATCTCAAGCTCTTGCAACTGCTGCAGCATCATCAGGATTCGCACCCCCTTCCAAAAACTGGCTGCACAACAATGGGTTTCACTGTCTTATGAGGCCCTCCTGA | 1653 | 47.73 | MWDLNDCPDERKEDESEGCWSAKTWIEGEGEEEKGKRVGSVSNSSSSAVLVEDGSDEDAPTPNALLMQINAPSPVTRQFFPLQHPQISSSSSSPSPTTASTFPQAHWVGVKFGHPDPFAAPAPPNSIKSTEISQPIKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLDLVFSSASNELVTGGFDTAHAAARAYDRAAIKFRGVEADINFSIEDYEEDLKQMGNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARKKKRKEIMNDDDDDNDRAYDKAAIKCNGKEAVTNFDPSIYQNELNPISDSTANLGDHSLDLSLGNSSSNQNDTPKPSIDPHHSSSSSAPLSMEDDWQRTQGFRRPQLNLVEESSGAGGNKHLKAAEGRNNRYLESETMQRLSQTHIQSPASFEMQRHAQFSRQVAGGDHNHNHNPTLNYQVGATALTIYAHIQFGGSSNGGGGRIGSDLSLSLNDHNQVVDYSGPSQALATAAASSGFAPPSKNWLHNNGFHCLMRPS | 550 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 3197835 | 3200572 | + | CmoCh07G007090.1 | Cmo07g00709 | 386017 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo07g00709 | 550 | MobiDBLite | consensus disorder prediction | 113 | 149 | - | - | |
Cmo07g00709 | 550 | MobiDBLite | consensus disorder prediction | 1 | 62 | - | - | |
Cmo07g00709 | 550 | SUPERFAMILY | DNA-binding domain | 253 | 330 | IPR016177 | GO:0003677 | |
Cmo07g00709 | 550 | SUPERFAMILY | DNA-binding domain | 148 | 219 | IPR016177 | GO:0003677 | |
Cmo07g00709 | 550 | ProSiteProfiles | AP2/ERF domain profile. | 254 | 328 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo07g00709 | 550 | MobiDBLite | consensus disorder prediction | 1 | 38 | - | - | |
Cmo07g00709 | 550 | Pfam | AP2 domain | 253 | 294 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo07g00709 | 550 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 1 | 58 | - | - | |
Cmo07g00709 | 550 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 73 | 548 | - | - | |
Cmo07g00709 | 550 | PANTHER | AP2 DOMAIN TRANSCRIPTION FACTOR | 1 | 58 | - | - | |
Cmo07g00709 | 550 | PANTHER | AP2 DOMAIN TRANSCRIPTION FACTOR | 73 | 548 | - | - | |
Cmo07g00709 | 550 | PRINTS | Ethylene responsive element binding protein signature | 310 | 330 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo07g00709 | 550 | PRINTS | Ethylene responsive element binding protein signature | 255 | 266 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo07g00709 | 550 | MobiDBLite | consensus disorder prediction | 343 | 386 | - | - | |
Cmo07g00709 | 550 | ProSiteProfiles | AP2/ERF domain profile. | 149 | 218 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo07g00709 | 550 | Gene3D | AP2/ERF domain | 148 | 220 | IPR036955 | GO:0003700|GO:0006355 | |
Cmo07g00709 | 550 | Gene3D | AP2/ERF domain | 253 | 329 | IPR036955 | GO:0003700|GO:0006355 | |
Cmo07g00709 | 550 | SMART | rav1_2 | 254 | 334 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo07g00709 | 550 | SMART | rav1_2 | 149 | 224 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo07g00709 | 550 | MobiDBLite | consensus disorder prediction | 343 | 388 | - | - | |
Cmo07g00709 | 550 | CDD | AP2 | 253 | 330 | IPR001471 | GO:0003700|GO:0006355 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo03g00985 | Cmo07g00709 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo02g00534 | Cmo-Chr2:3034021 | Cmo07g00709 | Cmo-Chr7:3197835 | 8.76E-114 | dispersed | |
Cmo06g00342 | Cmo-Chr6:1658640 | Cmo07g00709 | Cmo-Chr7:3197835 | 1.09E-07 | dispersed | |
Cmo07g00709 | Cmo-Chr7:3197835 | Cmo20g00493 | Cmo-Chr20:2325892 | 2.81E-98 | dispersed | |
Cmo03g00985 | Cmo-Chr3:7417465 | Cmo07g00709 | Cmo-Chr7:3197835 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
10137 | PF00847 | AP2 | 2.30E-06 | CL0081 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo07g00709 | K09284 | - | csv:101214724 | 585.489 |