Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g00716 ATGGACTGGATTCGAGGACATGAGATTGGGTGTGGGAGTTTTGCGACCATCAATTTAGCCATGCCTTCTAACACTTCTAATGCTCAGTTTCCTCCATTAATGGCCGTTAAATCGTCTCCAGCTGTCTCCTCTGCCTCGCTAAAGAACGAGAAGCGGGTTTTGGATCTTTTGGGTGATTGCCCTCAAATTATACGGTGTTTTGGTGAGAGCTGCAGCGTCGAGAGGGGCGACGAGTTGTATAATTTGTTTCTTGAGTATGCTAGTGGGGGTAGTTTGGCCGACAGAATACAGAGCCACGGTGGTTGGTTGCCGGAATTTGAGGTTCGGCGGTTGACGAGGACGATTCTCGAAGGGCTTCGGTATATTCACGAGAAAGGATTTGTTCACTGCGATGTGAAGCCTCGGAATATTCTAGTGTTTGGTGACGGCGAGGCTAAAATTGCTGATTTTGGATTGTCGAAGAAGGCGGGGAAAAACAGAGCAGAAACAGGGGAAGAGGGGAAATTTCAATTGAGAGGCTCTCCCCTGTACATGTCGCCGGAATCGGTGAACGATAACGAGTACGAGTCGCCGTGTGACATTTGGGCTGTCGGATGCGCGGTGGTGGAGATGTTGACCGGAAAACCCGCTTGGAATTTCCCAATGGAATCCAACATCTATTCTCTGTTACTGAAAATTGGGATCGGAGAGGAATTGCCGAAAATCCCAAAATATATTTCCGAGGAAGGGAAAGATTTTCTAGGTAAATGCCTGGTGAAGGATCCCGCAAAGAGATGGACGGCTGAGATGCTTCTGAACCATCCATTTCTAGCAGACTCCGGCAGCAGCTCTGTTCCATTGACGCCCAAGGACGAACCATCAACGTCGCCGAGATGCCCTTTCGATTTCGAAGATTGGGCATCAATTCACTCGCAAGAGGTGGATCAGAAATTCGAGGAAGAATCAAATTGTTGGTTGGATTCGTCGTGTCCGTGGTCGTGTTCACCGACGGAGCGGCTGCTTCAGCTAGTGGACAAGGGGCCAGTTGACTGGGTCATCACTGATAGTTGGGTCACCGTCAGATGA 1065 49.39 MDWIRGHEIGCGSFATINLAMPSNTSNAQFPPLMAVKSSPAVSSASLKNEKRVLDLLGDCPQIIRCFGESCSVERGDELYNLFLEYASGGSLADRIQSHGGWLPEFEVRRLTRTILEGLRYIHEKGFVHCDVKPRNILVFGDGEAKIADFGLSKKAGKNRAETGEEGKFQLRGSPLYMSPESVNDNEYESPCDIWAVGCAVVEMLTGKPAWNFPMESNIYSLLLKIGIGEELPKIPKYISEEGKDFLGKCLVKDPAKRWTAEMLLNHPFLADSGSSSVPLTPKDEPSTSPRCPFDFEDWASIHSQEVDQKFEEESNCWLDSSCPWSCSPTERLLQLVDKGPVDWVITDSWVTVR 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3227217 3228281 - CmoCh07G007160.1 Cmo07g00716 386024
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g00716 354 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 20 1 313 - -
Cmo07g00716 354 SMART serkin_6 3 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo07g00716 354 Gene3D Transferase(Phosphotransferase) domain 1 94 316 - -
Cmo07g00716 354 Pfam Protein kinase domain 6 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo07g00716 354 SUPERFAMILY Protein kinase-like (PK-like) 3 294 IPR011009 -
Cmo07g00716 354 ProSiteProfiles Protein kinase domain profile. 3 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo07g00716 354 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 1 313 - -
Cmo07g00716 354 CDD STKc_MAPKKK 2 270 - -
Cmo07g00716 354 ProSitePatterns Serine/Threonine protein kinases active-site signature. 127 139 IPR008271 GO:0004672|GO:0006468
Cmo07g00716 354 ProSitePatterns Protein kinases ATP-binding region signature. 9 37 IPR017441 GO:0005524
Cmo07g00716 354 Gene3D Phosphorylase Kinase; domain 1 1 93 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00571 Cmo-Chr3:5572843 Cmo07g00716 Cmo-Chr7:3227217 6.25E-63 dispersed
Cmo07g00716 Cmo-Chr7:3227217 Cmo20g01005 Cmo-Chr20:6127972 3.97E-131 dispersed
Cmo07g00716 Cmo-Chr7:3227217 Cmo02g00180 Cmo-Chr2:852639 1.31E-70 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74469 PF00069 Pkinase 2.20E-54 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g00716 - - bhj:120074166 599.356