Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g00763 ATGGAAGTGGTTCCTTTGTCCGATGTTCAGCATGTTAGGGATGACTCTGATTCTGCTCAGATTTCTGGAACTGCTTCGTTTCATGACGGACAATCAAACAACTGCGTCGATCCTCAACAACAACCAGCGCGGATGGCAAATGGTGGACTCAATGACTCATCCGTGAATGTTGAGGCCGCACAAATTAACAGCAAATGTGATGTTCAAGGGGTTCCTCAATATTTGCCTGCTTCTGGTCACTCTAGTTCGGATTCATATTCTAACTATCAGATGGATGCCCAAAAAGCATCTTCTGGTTCCCCCGACTCCGAATTTGATGATGCCAACACCGATAATTACTCCACGGAATCGTGTTTAGCATCTGAAAACTCTCGTATAGTTGTGGATACCATTGACGACGAATTGCCTAGCAGCAGCAAAGCTGAGGAGTTGTCTGTTTCGGGGCCAGAGCCAATGTGGTTGGAAGGGGATGAATCTGTGGCGCTTTGGGTGAAGTGGCGAGGGAAGTGGCAGGCTGGAATTAGATGTGCAAGGGCTGACTGGCCATTATCTACTTTAAAAGCCAAACCCACACATGAAAGGAAGAAGTATTTTGTGGTTTTTTTTCCACACACAAGGAACTATTCGTGGGCAGATGCATTGCTTGTTCGTTCTATTGAAGAATTTCCTCAGCCTATTGCATACAAGAGTCACAAAGCTGGTTTAAAATTGGTTGAAGATGTAAAAGTTGCAAGGAGATTTATAATGAAAAAACTTGCTGTTGGCATGCTGAATATCATAGACCAATTTCACCTCGAGGCTCTGATTGAGAGTGCACGTGATGTAATGAATTGGAAGGAATTTGCCATAGAAGCTTCACGCTGCAATGGTTATTCTGATCTTGGTAGAATGCTTCTGAAGCTGCAGAATATGATCCTGCAATGCTTCGTAAATCCAGATTGGCTTCAAAATTCTTTGCATTCTTGGGTACAGCGATGTCAAAATGCTCAAACTGCAGAAGTTATTGAAATGCTCAAGGAGGAATTGGCTGATGCTATTTTGTGGGACAAAGTGAAATCCCACGGTGATGCGCCAGTGCAGCCTACTTTTAGTTCTGTGTGGAAAACCTGGAAGCATGAGGTTACAAAATGGTTTTCAATATATCCCACTCTTCCCATTAGCAGAGACAAGGAGCAGCAGACTGTTGAAGCTTTCTTAGCTACAGCTCTCGAAGTCAGCAGGAAGAGGCCCAAGCTTGAAATTCGTCGTGCAGAGACACAGGCTTCATTGATGGAATCAAAGTGCTCAGATGAAGCTATGGCTCCTGATAATGATTCTGGTTTTTTCAATAACCAGACAAGTTTAAATGCTAAATTAGGATCTGAATCTCACAAAGTAGAGGTAAGGAAGATTGTTACATCAGCAGGCCCACTCAGTATTGTACCTGGTAGGTTGGCTGGGATTGTAGCTCAAACTGGAAGTTTGGATCTAGCCTCTTGCAAGGATGTGGAACTGAGACCTCATACTGAAACAGCTACAGAAAAACTCTTACATTATGGTAATAAGAACCGTCAATGCATAGCTTTTATTGAATCCAAGGGAAGGCAGTGTGTTAGATGGGCCAATGAGGGTGATGTTTACTGTTGTGTGCATTTATCCTCTCGTTTCACTGGCAACAATGATAAGAAAGAACAGACTCGTTCTGTTGAATCACCAATGTGCCAAGGTACTACTGTTCTTGGAAGTAGGTGCAAGCATCGATCTCTATTTGGCTCCTCATTCTGTAAGAAGCACAGACCAAGGAGTGAAACAAACATGGAGTCAACTTCCTATGAAAATAAGCTTATTGAGAAGCAACAGGATATTTATAGAGTAGAAGACACCCGTAATAAGGAAATAAAGTTTGACAGAGATGCTGGAAATCCCCTTGGAGTGGACGAGGGTGATGTGACCAATAATGGAAATAGCTCATCTGACAAACTTGAGCATCATGGAAAAGATTCTATTGCCTCAGAGGTTCGACACTGTATTGGTTCTTCCGAACATATTGACAGCAATCCATGTTTAGAAAGCCCAAAACGTCATTCTCTATATTGTGAAAAACACCTTCCTAGCTGGCTTAAACGTGCAAGAAATGGTAAGAGTAGAGTAATATCGAAGGAAGTATTCATGGATCTTTTAAGAGACTGTAACTCAGAAGAGCAAAAGATACATTTGCATCAAGCCTGTGAGCTATTTTACAGGCTTTTTAAAAGTATTTTATCTCTGAGGAATCCAGTTCCTATGGAGGTTCAATTTCAATGGGCACTTTCTGAAGCTTCTAAAAACTTGGGAGTTGGGGAACAGTTTATGAAATTGGTTTGTCATGAAAAGGAAAGATTAAAAAGGTTATGGGGGTTCGATGCTGAAGGAGCACAACTTTCCTCACCTTCGATGGAAGTGCCAACTGCAGGGCCATTATTAACTTCAGGTAATTGCAATGATGGTTCGAGTATCAGATGCAAAATTTGCTCTGAAGAATTTCTTGATGATCAAGCACTCAGTACTCACTTCATGGATGGTCATAAAAAGGAAGCGCAGTGGCTGTTCAGAGGTTATGCTTGTGCCATCTGCCTTGATTCGTTCACCAATAAGAAAGTTCTAGAAACTCATGTGCAGGAGAGACACCATGCACCATTTGTTGAGCAATGCATGCTTCTGCAGTGTATTCCTTGTGGCAGCCATTTTGGGAATACTGATCAATTATGGTTACATGTAGTTGCTGTACATCCCATTGATTTTAGATTGTCAAATTCTACTAGGCAGCATAATTCTTCGTCTGGTGAGGATTCCCCAGTCAAACCCAAGGAGTGCAATATAGTTTCTAAGTCGAATGATAACAAGAATGTAGGTGGTTTACGTAAGTTTAATTGTAGGTTCTGCGGTTTGAAGTTTGATTTACTGCCTGATCTTGGTCGCCACCATCAAGCTGCGCACATGGGTCCAGGTTTAGCTAACTCCCGAACTGCAAAGAGGGGATTTCATTATTATGCTTATAAATTAAAATCTGGGAAACTTGGTCATCCTAGATTTAAGAAGACTTTAGCGGGTGCGTCAAACCGGATCAGAAACAGAACAAAAGCTAGCATGAAAAAACATATTCAAACTTCAAAGTTACTAAGCACAGGAAGCATAAACCTTCAACCTCATGAGTCCCACTTAGCAAGTTCTCGTAAATTGACCCAAGGTTCAACTGTTTCGAAGGCATTGGTTTCTGAGATTCAGAAAATAAAATTATTTCCTACCAATGTTGACATTTTGTCTATTGCTCACTCTGCCTGTTGCAAGGTCAATTTTAAAGTTCTTCTGGAACAGAAGTTTGGAGTATTACCTGAATATTTTTATCTTAAGGCAGCTGAATTATGCAGGGAAAAAGTTAACTGGTATATCAAGGGATTTGTCTGTCCTAAAGGTTGTGAGACACTTAAGGATCCTCTTTTGACTCCCAATTTGATGTCTCATCCAAATGGTTTTGGAGGCCACAAGAATGCACACACTTCTGATCCAGTGAGTAGCAAATGGGAAGCTCATGGATGCAGTTATGCCATCGGTTCTCATCTTTCTAGCCAGCAGCTTAAGGAAAAGGCCGTCATTTTATGTGAAGATATAAGCTTTGGCCAGGAATTTGTTCCTGTGGTCTGTGTAGCTGACGAAGGTCTAAGGAACTCACCTCACATATCTCTAGCTAACTCAGATAGTCAAGAAGTTGGATACTCCATGCCTTGGGAGAGTTTTACCTATATTAAGAAATCATTGCTCAATAAATCTCTTGCCATTGATACGGAGAGTTTGCAGTTCGGCTGTGCCTGCGCTCATTCACTCTGTTCGTCTGAAACATGTGATCATGTATACCTCTTTGATAGTGATTATGAAGACCCAAAGGACATTTATGGGAATCCCATGAGTCGCAGGTTCCCATATGATGAGAACGGTCGTATTATTCTGGAGGAAGGCTACCTTGTCTATGAGTGTAATGAAAGGTGCAACTGTAGTAGAACCTGTCCAAATAGAGTGTTGCAAAATGGAGTTCATGTGAAACTCGAAGTCTTCTTGACAGAGACGAAGGGATGGACAGTGAGGGCTGGTGAAGTCATACTGCGTGGCACCTTTGTTTGCGAGTACATTGGGGAGGTGCTGGAGGAGCAGGAAGCAAACAGGAGACGTGACAGGTATAACTGTGAAGGCAATGGCTATTTCTTGGATGTGGATGCTCATATTAATGACATTAGCAGATTAATTGAAGGATCGGCTAGATATATTATTGATGCCACAAATTATGGAAATGTTTCGAGATTCATAAATCACAGTTGCTCACCAAATCTTGTAGCTTACCAAGTCCTTGTCGAAAGCATGGAATATCAGCGCTCACACATTGGATTGTATGCGAACCGGGATATAGCCACTGGTGAAGAGCTGACATTCAATTATCGACGCGAGCAATCACCTGGAGGAAATGGCTGTGAATCTTCAAGAGCAAGAGACCAATCTGAAAGCGCATGCCTTGCAGGTTTTGTGGATTATTTAAAGTCTTATGCCTCGTCTAAGCCAGCAACTCCCTCAGCCTAA 4584 41.99 MEVVPLSDVQHVRDDSDSAQISGTASFHDGQSNNCVDPQQQPARMANGGLNDSSVNVEAAQINSKCDVQGVPQYLPASGHSSSDSYSNYQMDAQKASSGSPDSEFDDANTDNYSTESCLASENSRIVVDTIDDELPSSSKAEELSVSGPEPMWLEGDESVALWVKWRGKWQAGIRCARADWPLSTLKAKPTHERKKYFVVFFPHTRNYSWADALLVRSIEEFPQPIAYKSHKAGLKLVEDVKVARRFIMKKLAVGMLNIIDQFHLEALIESARDVMNWKEFAIEASRCNGYSDLGRMLLKLQNMILQCFVNPDWLQNSLHSWVQRCQNAQTAEVIEMLKEELADAILWDKVKSHGDAPVQPTFSSVWKTWKHEVTKWFSIYPTLPISRDKEQQTVEAFLATALEVSRKRPKLEIRRAETQASLMESKCSDEAMAPDNDSGFFNNQTSLNAKLGSESHKVEVRKIVTSAGPLSIVPGRLAGIVAQTGSLDLASCKDVELRPHTETATEKLLHYGNKNRQCIAFIESKGRQCVRWANEGDVYCCVHLSSRFTGNNDKKEQTRSVESPMCQGTTVLGSRCKHRSLFGSSFCKKHRPRSETNMESTSYENKLIEKQQDIYRVEDTRNKEIKFDRDAGNPLGVDEGDVTNNGNSSSDKLEHHGKDSIASEVRHCIGSSEHIDSNPCLESPKRHSLYCEKHLPSWLKRARNGKSRVISKEVFMDLLRDCNSEEQKIHLHQACELFYRLFKSILSLRNPVPMEVQFQWALSEASKNLGVGEQFMKLVCHEKERLKRLWGFDAEGAQLSSPSMEVPTAGPLLTSGNCNDGSSIRCKICSEEFLDDQALSTHFMDGHKKEAQWLFRGYACAICLDSFTNKKVLETHVQERHHAPFVEQCMLLQCIPCGSHFGNTDQLWLHVVAVHPIDFRLSNSTRQHNSSSGEDSPVKPKECNIVSKSNDNKNVGGLRKFNCRFCGLKFDLLPDLGRHHQAAHMGPGLANSRTAKRGFHYYAYKLKSGKLGHPRFKKTLAGASNRIRNRTKASMKKHIQTSKLLSTGSINLQPHESHLASSRKLTQGSTVSKALVSEIQKIKLFPTNVDILSIAHSACCKVNFKVLLEQKFGVLPEYFYLKAAELCREKVNWYIKGFVCPKGCETLKDPLLTPNLMSHPNGFGGHKNAHTSDPVSSKWEAHGCSYAIGSHLSSQQLKEKAVILCEDISFGQEFVPVVCVADEGLRNSPHISLANSDSQEVGYSMPWESFTYIKKSLLNKSLAIDTESLQFGCACAHSLCSSETCDHVYLFDSDYEDPKDIYGNPMSRRFPYDENGRIILEEGYLVYECNERCNCSRTCPNRVLQNGVHVKLEVFLTETKGWTVRAGEVILRGTFVCEYIGEVLEEQEANRRRDRYNCEGNGYFLDVDAHINDISRLIEGSARYIIDATNYGNVSRFINHSCSPNLVAYQVLVESMEYQRSHIGLYANRDIATGEELTFNYRREQSPGGNGCESSRARDQSESACLAGFVDYLKSYASSKPATPSA 1527
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3445025 3459069 + CmoCh07G007630.1 Cmo07g00763 386071

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g00763 1527 Gene3D SET domain 1188 1488 IPR046341 -
Cmo07g00763 1527 ProSitePatterns Zinc finger C2H2 type domain signature. 964 985 IPR013087 -
Cmo07g00763 1527 ProSitePatterns Zinc finger C2H2 type domain signature. 895 916 IPR013087 -
Cmo07g00763 1527 MobiDBLite consensus disorder prediction 1 51 - -
Cmo07g00763 1527 ProSitePatterns Zinc finger C2H2 type domain signature. 827 848 IPR013087 -
Cmo07g00763 1527 SMART c2h2final6 893 916 IPR013087 -
Cmo07g00763 1527 SMART c2h2final6 825 848 IPR013087 -
Cmo07g00763 1527 SMART c2h2final6 859 882 IPR013087 -
Cmo07g00763 1527 SMART c2h2final6 962 985 IPR013087 -
Cmo07g00763 1527 SUPERFAMILY SET domain 1198 1485 IPR046341 -
Cmo07g00763 1527 ProSiteProfiles Pre-SET domain profile. 1272 1348 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Cmo07g00763 1527 MobiDBLite consensus disorder prediction 75 117 - -
Cmo07g00763 1527 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 1 1494 - -
Cmo07g00763 1527 Pfam SET domain 1362 1482 IPR001214 GO:0005515
Cmo07g00763 1527 MobiDBLite consensus disorder prediction 629 658 - -
Cmo07g00763 1527 MobiDBLite consensus disorder prediction 73 117 - -
Cmo07g00763 1527 Gene3D Classic Zinc Finger 815 885 - -
Cmo07g00763 1527 SMART preset_2 1206 1335 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Cmo07g00763 1527 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 1 1494 - -
Cmo07g00763 1527 SMART set_7 1351 1489 IPR001214 GO:0005515
Cmo07g00763 1527 Pfam Pre-SET motif 1230 1343 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Cmo07g00763 1527 Pfam Zinc finger C2H2-type, 3 repeats 861 986 IPR040689 -
Cmo07g00763 1527 MobiDBLite consensus disorder prediction 16 51 - -
Cmo07g00763 1527 ProSiteProfiles Zinc finger C2H2 type domain profile. 859 882 IPR013087 -
Cmo07g00763 1527 ProSiteProfiles SET domain profile. 1351 1483 IPR001214 GO:0005515
Cmo07g00763 1527 ProSiteProfiles Zinc finger C2H2 type domain profile. 962 990 IPR013087 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g00763 - - - cmax:111497014 3027.65
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g00763 Cmo-Chr7:3445025 Cmo16g01157 Cmo-Chr16:8240801 1.03E-33 dispersed
Cmo15g01509 Cmo-Chr15:10241565 Cmo07g00763 Cmo-Chr7:3445025 6.62E-19 dispersed
Cmo07g00763 Cmo-Chr7:3445025 Cmo03g00214 Cmo-Chr3:3428685 1.14E-27 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g897 . . Bda04g00312 . . . Bma09g00337 . . . . Cma07g00742 Car03g00706 Car07g00729 . . . . . . . . . . . . . . . . . . . Cone10ag0558 . Lsi01g01041 . . . . . . . . Bpe06g00240 . . . . Cmo07g00763 . . . . . . . . . . . . . . . . . . . . . . Chy02g00959 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007882 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 1 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10146 PF00856 SET 1.40E-19 No_clan Cmo TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo07g00763 Cmo_Chr07 FPKM 125.269676 135.044495 84.742111 83.039932 101.335091 93.617569 97.975517 60.39518 63.9851 61.964825