Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g00766 ATGCAAATGGTGGTGAACTCATTTGACTTGGTGATGGGGTTCGGAGCAGCAGCGCCATACACAACGCTAACGCAGAAGGCGATGTCAAGACACTTCCGGTGCTTAAAAGACGCCATAACCGAGCAGTTAAAGCAGAGCTACGAGGCATTGGGGGAGAAAGGTGGAAATGGAGGCTCGGGAATAACTAAAGGAGAGACACCAAGATTGAAGCTTCTGGAACAAAGCCTCCGCCAGCAAAGGGCTTTCCATCAAATGGGTATGATGGAACAAGAAGCTTGGAGGCCACAGCGTGGCCTCCCTGAACGATCTGTCAACATCCTTAGAGCTTGGCTGTTCGAGCATTTTCTTCACCCGTACCCCAGCGACGCAGACAAGCTCCTGTTAGCTCGGCAGACTGGTTTGTCCAGAAATCAGGTTTCAAATTGGTTCATTAATGCAAGAGTTCGTTTGTGGAAACCCATGGTAGAAGAAATGTACCAAATTGAAGGCAAGGACGAAACAGATCACTCTCATCAACAACAGCCATCAAAAGACGATGACGACGACACCACAGACAATAAGATCCAAAACAGTGCCATAAATGCACAAAATCCAACTCCCACCACCGCCACCACTTCCTCCATTCCACCGCCGTCTACCACCATTGCAGAGGAAGGTGCGGCGGGGTTCACGGCGACCCATGATCAATTCTCGGAGCTGCATGATGTGTGGCGACATGGAAGCGGACAACATTATGGGACCATGTCTGAGGATGCCAGAGCAGCGACTGACGTAAGTAATGGTCCAACACTTATAAGGTTTGGAACCAGTGGTACGACAACCGGTGACGTGTCACTCACTTTAGGTCTCCGCCACGCCGGTAACACTTCCGCCGCCACTATGGATAACCCTTCTTTCTCGCTCAGAGACTTTGGTCACTCTTAG 924 50.43 MQMVVNSFDLVMGFGAAAPYTTLTQKAMSRHFRCLKDAITEQLKQSYEALGEKGGNGGSGITKGETPRLKLLEQSLRQQRAFHQMGMMEQEAWRPQRGLPERSVNILRAWLFEHFLHPYPSDADKLLLARQTGLSRNQVSNWFINARVRLWKPMVEEMYQIEGKDETDHSHQQQPSKDDDDDTTDNKIQNSAINAQNPTPTTATTSSIPPPSTTIAEEGAAGFTATHDQFSELHDVWRHGSGQHYGTMSEDARAATDVSNGPTLIRFGTSGTTTGDVSLTLGLRHAGNTSAATMDNPSFSLRDFGHS 307
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3469757 3471999 - CmoCh07G007660.1 Cmo07g00766 386074
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g00766 307 MobiDBLite consensus disorder prediction 187 213 - -
Cmo07g00766 307 ProSiteProfiles 'Homeobox' domain profile. 90 153 IPR001356 GO:0003677
Cmo07g00766 307 SUPERFAMILY Homeodomain-like 94 161 IPR009057 -
Cmo07g00766 307 Pfam Homeobox KN domain 110 149 IPR008422 GO:0003677|GO:0006355
Cmo07g00766 307 Gene3D - 96 158 - -
Cmo07g00766 307 MobiDBLite consensus disorder prediction 163 186 - -
Cmo07g00766 307 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 2 1 292 - -
Cmo07g00766 307 CDD homeodomain 93 154 IPR001356 GO:0003677
Cmo07g00766 307 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 292 - -
Cmo07g00766 307 Pfam Associated with HOX 1 40 IPR006563 -
Cmo07g00766 307 MobiDBLite consensus disorder prediction 163 216 - -
Cmo07g00766 307 SMART HOX_1 93 157 IPR001356 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g00766 Cmo-Chr7:3469757 Cmo20g01176 Cmo-Chr20:11619666 1.70E-103 dispersed
Cmo07g00766 Cmo-Chr7:3469757 Cmo02g00570 Cmo-Chr2:3314129 1.31E-108 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10147 PF07526 POX 1.30E-16 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g00766 - - bhj:120073177 460.299