Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g00768 ATGGATATAAGTCGTTGTGCGAAGGAGCCAACAAACAAGGTTGATATCATTTTTGACACTATGAAGTGGAGAATCAATATCGATACGACCTCAGGTGACATGGAAGAAGCTGATCAAGTGGAAGTTGATTATGTTAAGGCATTATCACTCTCACAAATGGAATTTGAAAATGAACAAGATTTGATCATTGAGAGAAAGATAAAGGAAACCCTCAATGTCCAAACTGAAGAGGATGAGCAGCTTGCCAATGCAATGCAACTAAGCTTAGTCATGGCGTCTTCTAAAGCTGTTTCTTCTGCATTCAAGATTGTCTGTGCTGGATGCAACAATGAGATAAGTCGACGCGAAAATCGTTTCGATTGTAATGGTGTTGTTTGGCATGTTAAATGTCTCCAATGCCATGCTTGCATACAACCGATCAAAGATGACCAGTTCTACATGGCTGAAAATCGACCTTACCACACATCTTGCCCTAGGAATAAGAGTCATCTCAAATGCTATGTATGCAATGACTTTATCCCATATATTGGTAAGGAGGTCGAATGTGGAGAGCATCCTTTTTGGGCACAAAAGTACTGCCCGTCCCATGAAGATGATGGAACTTCCAAATGTGCTAGCTGTGAAAGGTTGGAGCCAAAAGGACGGGAGTACATTTTACTCCAAGATGGCAGAAGTTTATGTGTAGAGTGTTCCACCTTCATGATCATGGACACCAAAGAGTGTCAACCTCTTTTCCGTGAGATACAAGAGTACTTCACAAGTTTAGACATGAAACTGGACCAAAAAATTCCATTGTTGTTGGTCGAAAGGGAAGCATTGAATGAAGCCATGAAAGGGGAAAGGAATGGACACCACCATTTATCTGAAACTCGAGGACTCTGCGTGTCAGAAGAGCAAATCATTCCCGTTATTCATGAGAGGAAACATACGGAAAGATACTCACCCTTGAACACACAGCCTTTCAGACTTGTTCGTAGTTGTGAAGTTAATGCTATACTCATTCTATATGGTCTTCCCAGGCTATTGACTGGATCCATTCTAGCACATGAGATGATGCATGCATGGCTTAGACTTCAAGGCTATCCCAATTTAAAACCTGAAATCGAAGAAGGAATCTGCCAAGTCCTCGCTCACATGTGGCTGAAATCCAAGATCAATATGGGATCTGAAGCAACCATGATTGCTAGCTCGTCTTCTACCCGACAACCTCCACGTTCAAACAAGCACAAGCAGCTGAGTAAAATCGAGCAGAAACTCGGTGAATGCTTCGTTCGCCAAATCGAGCTGGATAACTCCGAAGCTTATGGAGATGGGTTCAGGGTGGGAGAACAGGCTGTTTCTCAGTATGGCTTAAAGGAGACTCTTCATCACATCAAACGCACTCGAAACTTTCCATTTTAA 1401 42.4 MDISRCAKEPTNKVDIIFDTMKWRINIDTTSGDMEEADQVEVDYVKALSLSQMEFENEQDLIIERKIKETLNVQTEEDEQLANAMQLSLVMASSKAVSSAFKIVCAGCNNEISRRENRFDCNGVVWHVKCLQCHACIQPIKDDQFYMAENRPYHTSCPRNKSHLKCYVCNDFIPYIGKEVECGEHPFWAQKYCPSHEDDGTSKCASCERLEPKGREYILLQDGRSLCVECSTFMIMDTKECQPLFREIQEYFTSLDMKLDQKIPLLLVEREALNEAMKGERNGHHHLSETRGLCVSEEQIIPVIHERKHTERYSPLNTQPFRLVRSCEVNAILILYGLPRLLTGSILAHEMMHAWLRLQGYPNLKPEIEEGICQVLAHMWLKSKINMGSEATMIASSSSTRQPPRSNKHKQLSKIEQKLGECFVRQIELDNSEAYGDGFRVGEQAVSQYGLKETLHHIKRTRNFPF 466
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3480473 3486018 + CmoCh07G007680.1 Cmo07g00768 386076

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g00768 466 CDD LIM_DA1 105 157 - -
Cmo07g00768 466 ProSitePatterns LIM zinc-binding domain signature. 105 140 IPR001781 -
Cmo07g00768 466 SMART lim_4 104 157 IPR001781 -
Cmo07g00768 466 ProSiteProfiles LIM domain profile. 103 164 IPR001781 -
Cmo07g00768 466 Gene3D Cysteine Rich Protein 90 163 - -
Cmo07g00768 466 PANTHER PROTEIN DA1-RELATED 2 51 465 IPR045218 -
Cmo07g00768 466 Pfam Protein DA1 255 461 IPR022087 -
Cmo07g00768 466 Pfam LIM domain 105 155 IPR001781 -
Cmo07g00768 466 PANTHER PROTEIN DA1-RELATED 1 51 465 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g00768 - - - csv:101204053 621.313
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g00768 Cmo-Chr7:3480473 Cmo20g01182 Cmo-Chr20:11658561 4.13E-150 dispersed
Cmo12g00443 Cmo-Chr12:2722280 Cmo07g00768 Cmo-Chr7:3480473 3.62E-143 wgd
Cmo03g01030 Cmo-Chr3:7714496 Cmo07g00768 Cmo-Chr7:3480473 7.41E-56 wgd
Cmo05g00224 Cmo-Chr5:960048 Cmo07g00768 Cmo-Chr7:3480473 4.31E-143 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g902 . . . . . . . . . . . Cma07g00747 . Car07g00734 . . . . . . . . . . . . . . . . . . . . . Lsi01g01044 . . . . . . . . . . . . . Cmo07g00768 . . . . . . . . . . . . . . . . . . . . . . Chy02g00964 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010044 0 3 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 7 2 0 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10148 PF12315 DA1-like 7.70E-86 CL0126 Cmo TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo07g00768 Cmo_Chr07 FPKM 5.28615 6.063483 5.04373 5.149868 4.386785 4.107849 4.943206 6.759435 6.779662 8.965055