Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g00772 ATGCTTCTAGCAGAGTTCATGCTAATTCTTGCTTGCTTTTTCGCCATTCATGGCGGCGCCGACAGCGCAGCCTTTCCATGTCCTGTCGATTCTCCACGTTCTTGTAGCACTTACGTCTCGTACTTCGCAAAATCATCACAATTTTTGGATCTTATGAGCATATCGAGCTTGTTTGGAGTCAGTGCTTCGAAGATTGCCAAAGCAAGTAACTTGGGATCTGAGACAGCTCCATTGTTTGATGGGCAGATTCTACTGGTGCCTGTGGACTGTCACTGCTCTGAAAATGGCTTCTTCCACAATGTTACCTACAAAATCAAGAAAGATGACACCTTTTTCCACGTCTCGACCACCACGTTTGAGAATCTCTGCGCTTGGAACATGGTGCAGAAAATGAACCCAAATCTAAATCCAACGAAATTGCAGGTGGGGGCAGAGGTGGTTTTTCCTCTGTTTTGTAAGTGCCCTTCTGAGAAAAACTTGAAACAGGGGATTCAATATCTTATTACTTATGTATGGCAACCCAACGATCAGGTTTCTCGTGTTAGTGCCATTTTTAATGTCTCAGAAGAAGCAATAAACGTGACGGATTTCACCGTTGGAAAGCCCATTTATGTCCCTGTTTCGAAACTTCCTCTGTTTTCTCTGTCTTGGCCTCAGAGGAAACATATCAAACACCTTGTGATTATAATTGTGGCTTTGGGGATTAGTTTCCTGTTGGGATCATTGTTGGGTGTTTATATTTGGTTAATCCACAAGAAAAAAACATTACCCATGTGGGAAATTTCCATTTTTGGAATCTCTAAGCTCACAAAAAAGAAGATGACAAAACAGAGCAGGCAGCTGCAGGTTCTTCCTCCGGTGGTTTCCGACTACTTGGGAAGGCCGATTTTTTACGAATTTGAAGTGATAGCAGAGGCGACGATGAACTTCAACGAGGGGTTTAAGATTGGGAAATCATTATACAGAGCCGAAATCAATGGAGAAATCTCAGTGGTAAAGGAAGCGAAACAGGATTCAAAGGAAGAGCTAATGATTCTGCAGAAAGTTAATCATATAAGTTTAGTGAAACTGGTGGGATTCTCTTCAGATTATGAGGAGAATTTTTACTTAGTTTATGAATTTGCTGAAAATGGGTCGTTGGATAAATGGCTTCATTCGCCATCTCCAGTTTCTTCAGGCTCTGTGAGCTTCCATCTCACATGGAGCCAACGGCTGAACATAGCTTTGGATGTGGCTAATGGGTTGCAGTATATGCACGATCACACTCAGCCAAGCATAGTTCATAGGGATATCAAAACGGGTTGCATCCTTCTTGACTCGAGATTCAGAGCAAAGATTTCAAATCTAGCCAAGGCCAGGCCTGCCACTGGTCCTCTGTCCACAAAAGTTGATATTTTCGCTTTTGGGGTTGTGATTTTGGAGCTGCTTTCTGGGAAAAAAGAAGTGAAGTTATGTGAAGAGATAAGGGAGGTTTTAGAACAAGAACAGAGCAGAGAAGAGAAGTTAAGAGATTGGATGGACCCAAAATTACAGAGCTTTTACCCAATTGAAGGAGCTTTGAGCTTGGCTCTAATGGCGAGGGCTTGTACACAAGAAGAACCTTTGTCCAGGCCAACAATGGCGGAAATCGTCTTCAATCTCTGTGTTCTTGCTGAATCTCCCATTGAAAAGGCAGAAAAAACATGGGTTTCTCTTTTGGAGGCGGATGAAATCGCCGGTAGCCATGGCGTCATTAGAGCTCGTTGA 1746 43.01 MLLAEFMLILACFFAIHGGADSAAFPCPVDSPRSCSTYVSYFAKSSQFLDLMSISSLFGVSASKIAKASNLGSETAPLFDGQILLVPVDCHCSENGFFHNVTYKIKKDDTFFHVSTTTFENLCAWNMVQKMNPNLNPTKLQVGAEVVFPLFCKCPSEKNLKQGIQYLITYVWQPNDQVSRVSAIFNVSEEAINVTDFTVGKPIYVPVSKLPLFSLSWPQRKHIKHLVIIIVALGISFLLGSLLGVYIWLIHKKKTLPMWEISIFGISKLTKKKMTKQSRQLQVLPPVVSDYLGRPIFYEFEVIAEATMNFNEGFKIGKSLYRAEINGEISVVKEAKQDSKEELMILQKVNHISLVKLVGFSSDYEENFYLVYEFAENGSLDKWLHSPSPVSSGSVSFHLTWSQRLNIALDVANGLQYMHDHTQPSIVHRDIKTGCILLDSRFRAKISNLAKARPATGPLSTKVDIFAFGVVILELLSGKKEVKLCEEIREVLEQEQSREEKLRDWMDPKLQSFYPIEGALSLALMARACTQEEPLSRPTMAEIVFNLCVLAESPIEKAEKTWVSLLEADEIAGSHGVIRAR 581
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3497486 3499231 + CmoCh07G007720.1 Cmo07g00772 386080

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g00772 581 PANTHER SERINE/THREONINE RECEPTOR-LIKE KINASE NFP 8 581 - -
Cmo07g00772 581 SUPERFAMILY Protein kinase-like (PK-like) 300 547 IPR011009 -
Cmo07g00772 581 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 8 581 - -
Cmo07g00772 581 Pfam Protein tyrosine and serine/threonine kinase 333 449 IPR001245 GO:0004672|GO:0006468
Cmo07g00772 581 Gene3D Phosphorylase Kinase; domain 1 291 374 - -
Cmo07g00772 581 Gene3D Transferase(Phosphotransferase) domain 1 375 455 - -
Cmo07g00772 581 Gene3D Transferase(Phosphotransferase) domain 1 456 566 - -
Cmo07g00772 581 ProSiteProfiles Protein kinase domain profile. 286 549 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g00772 - - - mcha:111005386 794.653
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00561 Cmo-Chr2:3204174 Cmo07g00772 Cmo-Chr7:3497486 3.37E-170 dispersed
Cmo06g01362 Cmo-Chr6:10070709 Cmo07g00772 Cmo-Chr7:3497486 3.01E-103 dispersed
Cmo07g00772 Cmo-Chr7:3497486 Cmo14g01807 Cmo-Chr14:13827129 2.69E-101 dispersed
Cmo07g00769 Cmo-Chr7:3485955 Cmo07g00772 Cmo-Chr7:3497486 1.03E-74 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g905 . . Bda04g00317 . . . Bma09g00351 . . . . Cma07g00750 . Car07g00737 . . . . . . . . . . . . . . . . . . . Cone6ag1352 . Lsi01g01049 . . . . . . . . . . . . . Cmo07g00772 . . . . . . . . . . . . . . . . . . . . . . Chy02g00965 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002802 1 2 1 0 0 1 2 2 2 2 2 1 2 2 2 2 1 2 2 1 2 2 1 1 0 2 2 1 1 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74474 PF07714 PK_Tyr_Ser-Thr 4.90E-17 CL0016 Cmo PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo07g00772 Cmo_Chr07 FPKM 1.401013 1.256413 4.572679 5.294509 0.917809 0.921133 1.305399 2.865999 2.446312 2.887454