Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo07g00775 | ATGGCGAGCGAGTTTGGAGAATCAACAAGCGTGCCAAATCAAAACCCCTCTTCGTCCAGTAACAATGATATTGGCGATTTCGAATGCAATATTTGTTTCGAGTTAGCTCAAGATCCAATTATCACTCTCTGTGGCCATCTCTTTTGCTGGCCTTGTTTGTATAGATGGCTGCATTATCACTCACAATGTCAAGAATGTCCTGTTTGTAAGGCTCTTATTGAGCAGGAGAAATTGATTCCTCTTTATGGGAGGGGAAAGGTACCATCTGACCCGAGATTGAAGAGATATTCTGGTATGGATGTTCCGAGTCGCCCTGCTGGTCAAAGGCCTCAAACAGCACCTCCCCCTGTTGCTAATGACTTTGCAAACTATGGATTTGGATTCACTGGTGGCTTTATGCCAATGTCAACAGCAAGGATTGGCAACTTCACCTTGGCGACTGCTTTTGGTGGTCTGATCCCATCTTTATTCAATATCCAGTTTCATGGATTTCCTGATGCTACAGTTTATGGGACTACTTCTGGTTACCCCCCCTATGCATTCAACACATTCCATGGGGGTCATGGCCACCATTTTCAGCAACCGACGAGTCAAGGTCAGCATGCTGATAATGTACTGAAAAACCTCCTTTTACTCGTTGGTGTCTTTGTGATTCTTGCCTTGCTTTGGTGGTAG | 675 | 44.89 | MASEFGESTSVPNQNPSSSSNNDIGDFECNICFELAQDPIITLCGHLFCWPCLYRWLHYHSQCQECPVCKALIEQEKLIPLYGRGKVPSDPRLKRYSGMDVPSRPAGQRPQTAPPPVANDFANYGFGFTGGFMPMSTARIGNFTLATAFGGLIPSLFNIQFHGFPDATVYGTTSGYPPYAFNTFHGGHGHHFQQPTSQGQHADNVLKNLLLLVGVFVILALLWW | 224 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 3503464 | 3504138 | - | CmoCh07G007750.1 | Cmo07g00775 | 386083 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo07g00775 | 224 | SUPERFAMILY | RING/U-box | 25 | 82 | - | - | |
Cmo07g00775 | 224 | Pfam | Zinc finger, C3HC4 type (RING finger) | 27 | 74 | - | - | |
Cmo07g00775 | 224 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Cmo07g00775 | 224 | ProSiteProfiles | Zinc finger RING-type profile. | 29 | 70 | IPR001841 | - | |
Cmo07g00775 | 224 | SMART | ring_2 | 29 | 69 | IPR001841 | - | |
Cmo07g00775 | 224 | ProSitePatterns | Zinc finger RING-type signature. | 44 | 53 | IPR017907 | - | |
Cmo07g00775 | 224 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 6 | 99 | IPR013083 | - | |
Cmo07g00775 | 224 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED | 2 | 223 | IPR045103 | GO:0005783|GO:0006511|GO:0061630 | |
Cmo07g00775 | 224 | PANTHER | RING ZINC FINGER PROTEIN-RELATED | 2 | 223 | - | - | |
Cmo07g00775 | 224 | CDD | RING-HC_AtRMA_like | 27 | 71 | - | - | |
Cmo07g00775 | 224 | MobiDBLite | consensus disorder prediction | 93 | 114 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo07g00775 | Cmo-Chr7:3503464 | Cmo12g00442 | Cmo-Chr12:2713840 | 5.04E-66 | dispersed | |
Cmo03g01032 | Cmo-Chr3:7732278 | Cmo07g00775 | Cmo-Chr7:3503464 | 1.63E-134 | wgd | |
Cmo05g00227 | Cmo-Chr5:968231 | Cmo07g00775 | Cmo-Chr7:3503464 | 6.87E-82 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo07g00775 | K10666 | - | csv:101205026 | 397.512 |