Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g00775 ATGGCGAGCGAGTTTGGAGAATCAACAAGCGTGCCAAATCAAAACCCCTCTTCGTCCAGTAACAATGATATTGGCGATTTCGAATGCAATATTTGTTTCGAGTTAGCTCAAGATCCAATTATCACTCTCTGTGGCCATCTCTTTTGCTGGCCTTGTTTGTATAGATGGCTGCATTATCACTCACAATGTCAAGAATGTCCTGTTTGTAAGGCTCTTATTGAGCAGGAGAAATTGATTCCTCTTTATGGGAGGGGAAAGGTACCATCTGACCCGAGATTGAAGAGATATTCTGGTATGGATGTTCCGAGTCGCCCTGCTGGTCAAAGGCCTCAAACAGCACCTCCCCCTGTTGCTAATGACTTTGCAAACTATGGATTTGGATTCACTGGTGGCTTTATGCCAATGTCAACAGCAAGGATTGGCAACTTCACCTTGGCGACTGCTTTTGGTGGTCTGATCCCATCTTTATTCAATATCCAGTTTCATGGATTTCCTGATGCTACAGTTTATGGGACTACTTCTGGTTACCCCCCCTATGCATTCAACACATTCCATGGGGGTCATGGCCACCATTTTCAGCAACCGACGAGTCAAGGTCAGCATGCTGATAATGTACTGAAAAACCTCCTTTTACTCGTTGGTGTCTTTGTGATTCTTGCCTTGCTTTGGTGGTAG 675 44.89 MASEFGESTSVPNQNPSSSSNNDIGDFECNICFELAQDPIITLCGHLFCWPCLYRWLHYHSQCQECPVCKALIEQEKLIPLYGRGKVPSDPRLKRYSGMDVPSRPAGQRPQTAPPPVANDFANYGFGFTGGFMPMSTARIGNFTLATAFGGLIPSLFNIQFHGFPDATVYGTTSGYPPYAFNTFHGGHGHHFQQPTSQGQHADNVLKNLLLLVGVFVILALLWW 224
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3503464 3504138 - CmoCh07G007750.1 Cmo07g00775 386083
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g00775 224 SUPERFAMILY RING/U-box 25 82 - -
Cmo07g00775 224 Pfam Zinc finger, C3HC4 type (RING finger) 27 74 - -
Cmo07g00775 224 MobiDBLite consensus disorder prediction 1 20 - -
Cmo07g00775 224 ProSiteProfiles Zinc finger RING-type profile. 29 70 IPR001841 -
Cmo07g00775 224 SMART ring_2 29 69 IPR001841 -
Cmo07g00775 224 ProSitePatterns Zinc finger RING-type signature. 44 53 IPR017907 -
Cmo07g00775 224 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 99 IPR013083 -
Cmo07g00775 224 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 2 223 IPR045103 GO:0005783|GO:0006511|GO:0061630
Cmo07g00775 224 PANTHER RING ZINC FINGER PROTEIN-RELATED 2 223 - -
Cmo07g00775 224 CDD RING-HC_AtRMA_like 27 71 - -
Cmo07g00775 224 MobiDBLite consensus disorder prediction 93 114 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g00775 Cmo-Chr7:3503464 Cmo12g00442 Cmo-Chr12:2713840 5.04E-66 dispersed
Cmo03g01032 Cmo-Chr3:7732278 Cmo07g00775 Cmo-Chr7:3503464 1.63E-134 wgd
Cmo05g00227 Cmo-Chr5:968231 Cmo07g00775 Cmo-Chr7:3503464 6.87E-82 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g00775 K10666 - csv:101205026 397.512