Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g00777 ATGAGCTCTGTCAGTTTCGCGAATCCATTGATTCAGAGCAACTCTGTTCTCAACAATTCTCAGAAATTCAATCAAAAATCCTTTTCTTTTCTTCATCCATGGAACCCCTTGTCGTCTTTTTCCTCCAAATCCATTAAAAAACCTTCCTTTAACCTCCGCATATCGGCGGCGCAAACCAGAGTAGAAACAGAGCTCCGCCCGGTTGTTGAACAAAATGACCAAAAAGGGGTCTTCAGTTTCAAAGACTACATGGTGCAGAAGGCTAATTTGGTAAATCAAGCTTTGAACGACGCCGTTTCCCTGCGGGACCCACTGAAGATTCACGAGGCCATGCGTTACTCTCTCCTCGCCGGCGGGAAGCGTGTACGGCCAGTGCTCTGTCTCGCTGCCTGCGAGCTTGTTGGTGGTTCTGAGTCTGCCGCTATGCCGGCCGCTTGCGCCACTGAAATGATCCACACCATGTCTTTAATCCACGATGATCTTCCATGCATGGACAACGACGACCTCCGGCGAGGAAAGCCGACGAGCCACCGTATGTTTGGTGAGGACATAGCCATCCTCGCCGGTGACGCTCTTTTAGCCTTCGCATTTGAGCACATCGCAGTGGCGACAGAGGCGGGGGTATCGCCGGAGAGAGTGGTCCAAGCAATTGGAGAATTGGCAAAAGCCACCGGAACATCAGGGTTAGTCGCCGGGCAAGTGGTGGACATAGACTCCGAAGGCTCTAACGACGTCGGATTGGAACTCCTCGAGTACATCCACGTACACAAAACGGCAGCGCTTCTGGAAGCCGCCGCCGTCATGGGAGCAATCATAGGCGGCGGAAGCAACACCGAAGTGGAGAAGGTGAGGAAATTCGCCCGACAGATCGGATTACTCTTCCAAGTGGTAGACGACATTCTAGATGTGACAAAGTCGTCGGAGGAATTGGGGAAGACGGCCGGAAAAGACCTGGCGGCGGACAAAGCGACGTATCCAAAATTACTCGGAATCGAAAAATCAAAGGAATTTGCGGAGACGCTAAAGAGAGAAGCCGGAGAAGCGCTAGCCGGATTTGATCCGGCGAAGGCGGAGCCGTTAATTGCCCTGTCGAATTACATAGCCTATAGGCAAAATTGA 1119 51.92 MSSVSFANPLIQSNSVLNNSQKFNQKSFSFLHPWNPLSSFSSKSIKKPSFNLRISAAQTRVETELRPVVEQNDQKGVFSFKDYMVQKANLVNQALNDAVSLRDPLKIHEAMRYSLLAGGKRVRPVLCLAACELVGGSESAAMPAACATEMIHTMSLIHDDLPCMDNDDLRRGKPTSHRMFGEDIAILAGDALLAFAFEHIAVATEAGVSPERVVQAIGELAKATGTSGLVAGQVVDIDSEGSNDVGLELLEYIHVHKTAALLEAAAVMGAIIGGGSNTEVEKVRKFARQIGLLFQVVDDILDVTKSSEELGKTAGKDLAADKATYPKLLGIEKSKEFAETLKREAGEALAGFDPAKAEPLIALSNYIAYRQN 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3511881 3512999 + CmoCh07G007770.1 Cmo07g00777 386085

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g00777 372 CDD Trans_IPPS_HT 107 370 IPR000092 GO:0008299
Cmo07g00777 372 PANTHER GERANYLGERANYL PYROPHOSPHATE SYNTHASE, CHLOROPLASTIC-LIKE 1 372 - -
Cmo07g00777 372 SFLD Polyprenyl Transferase Like 83 370 - -
Cmo07g00777 372 PANTHER FARNESYL DIPHOSPHATE SYNTHASE 1 372 - -
Cmo07g00777 372 SUPERFAMILY Terpenoid synthases 80 352 IPR008949 -
Cmo07g00777 372 Pfam Polyprenyl synthetase 107 343 IPR000092 GO:0008299
Cmo07g00777 372 Gene3D Farnesyl Diphosphate Synthase 72 372 IPR008949 -
Cmo07g00777 372 SFLD Isoprenoid Synthase Type I 83 370 - -
Cmo07g00777 372 ProSitePatterns Polyprenyl synthases signature 1. 156 172 IPR033749 -
Cmo07g00777 372 ProSitePatterns Polyprenyl synthases signature 2. 290 302 IPR033749 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g00777 K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29] - csv:101203974 552.362
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00701 Cmo-Chr4:3479202 Cmo07g00777 Cmo-Chr7:3511881 3.49E-26 dispersed
Cmo07g00777 Cmo-Chr7:3511881 Cmo20g01148 Cmo-Chr20:11270136 7.48E-176 dispersed
Cmo03g01034 Cmo-Chr3:7740876 Cmo07g00777 Cmo-Chr7:3511881 5.03E-08 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g916 . . . . . . Bma09g00356 . . . . Cma07g00754 . Car07g00741 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe06g00249 . . . . Cmo07g00777 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002369 1 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 3 2 2 2 2 2 2 2 2 3 2 2 2 60
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo07g00777 Cmo_Chr07 FPKM 2.374359 1.539195 0.393089 1.074246 0.597895 0.570019 0.621784 1.200782 1.979325 0.636829