Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g00789 ATGATACCCTTTTCCCCATCTTCTTCAATATCCTTTCTGTTCTTCTTTTTCTTCCTTTTTTCCCTCTCTGTTTTCTCTGTTTCTTCTTCTCATACAGACGCCCAGCAGCTGATTTCATTGAAATCTTCACTTCCCAATCCAAACCTCCTTCAAAACTGGCTTTCCAACGGCGACCCATGTTCGTTTTCCGGCGTTTCCTGCAAGGAAACCAGAGTTTCCGCCATAGATTTGAGCTTCGTGTCGTTGAGCTCTAATTTCAGCCATGTTTTCCCTTTGCTTGCAGCTCTCGACCATTTGGAATCGCTTTCTCTGAAATCCACGAACCTTACTGGCTCCATTTCCCTGCCTGCTGGATTCAAATGTAGCCCTCTTCTTTCTTCTCTGGATCTGTCACTCAATGGCTTGTTCGGCTCTGTTTCTGATGCCTCTTATTTGGGGTTTTGTTCCAATATCAAGTCGCTTAATCTGTCATTTAACGCTTTTGATTTTCCCCCAAAAGACTCTGCCGCCGGATTGAAGCTCGATTTGCAAGTTCTTGATCTTTCTTCCAATCGGATTGTTGGGTCGAAATTAGTTCCATGGGTTCTCTCATCTGGGTGTAGTAATTTGCAGTTCTTAGCATTGAAGGGTAACAAAATCAGCGGCGAAATTAATCTCTCATCCTGTAATAAACTCCAGCATTTGGATATCTCCGGCAACAATTTCTCTGCGGGTATTCCGTCGTTAGGCGATTGCTCTGTTTTGGAGTATCTTGATATCTCCGGCAATAAGTTCACCGGCGACGTCGGAAATACTCTGTCTTCTTGTTTGCAACTGAGATTTCTGAATCTCTCGAGCAACCAGTTTCAAGGATCAATCCCTTCATTTTCATCGCCCAATTTGTGGTTTCTTTCACTTGCTAACAACGATTTTCAGGGGGAGATTCCGGTGAGTATTGATGATTCTTGTTCTAGTTTGGTTCATTTGGATCTTTCTGAAAATGGTTTGATTGGGGGTATACCTTCTGGTTTGGGGTCTTGTTCTTTGTTGGAATCTTTGGACATTTCTAAAAATAACCTCTCTGGTGAGCTCCCCATTGATGTTTTTGCCAAAATGAGTAGTTTGAAGAGACTGTCTATGTCGGATAACAAGTTTTTCGGGGTTTTGTCGGATTCTCTGTCTCAGCTCACCACTTTGAATTCCTTGGATCTGAGTTCTAATAACTTCTCTGGCTCGATTCCTGTCGGGCTCTGTGAAGATCCTAAGAACAGCTTGAAAGAATTGTTTCTTCAGAACAATTGGTTGACTGGTCGGATCCCTGCAAGTATTAGCAACTGTTCTCAGCTGGTTTCGCTTGATTTGAGCTTCAACTTTCTGAGTGGGACGATCCCTTCAAGCTTGGGATCACTATCTAAGCTGAAGAACTTGATCATGTGGTTGAATCAGCTGGAAGGGGAGATCCCATCGGATTTTAAGAACTTTCAGGGGCTTGAGAATCTGATCCTGGATTTCAATGAGCTAACCGGGACGATTCCTTCCGGGTTAAGCAATTGCACGAACTTGAACTGGATTTCGTTGTCGAACAACCGGTTGAGCGGAGAGATACCGAGGTGGATTGGGCAGCTGCCAAGCCTAGCCATCCTTAAGCTGAGTAACAACTCATTCCATGGAAGGATACCTCGAGAGCTCGGTGATTGTCGGAGCTTGATCTGGCTGGATCTGAATACGAATATGCTGAACGGAACGATTCCTCGAGAGCTGTTTCGACAATCGGGTAACATTGCTGTAAACTTTATCACTGGGAAGTCTTATGCTTACATTAAGAATGATGGTAGCAAGCAGTGCCATGGAGCTGGAAATTTGGTGGAGTTTGCTGGGATAAGACAAGAACAAGTGAACAGGATATCAAGTAAGAGTCCCTGCAATTTCACCAGGGTTTATAAAGGAATGACTCAACCGACGTTTAACCATAACGGGTCGATGATCTTCCTCGATCTTTCGCATAATATGTTGTCTGGTAGTATTCCAAAGGAGATTGGTTCTACAAAATATCTGTACATATTGGATTTGGGGCACAACAGGGTGTCGGGAGGCATTCCGCAGGAGCTGGGCGACTTGACGAAGCTTAACATTCTTGATCTGTCAAGCAATGAGCTTGAAGGATCAATACCTTTGTCCTTGACTGGGCTATCCTCCCTCATGGAGATTGATCTGTCAAACAATCATCTCAATGGTTCGATACCCGAATCAGCTCAGTTCGAAACGTTCCCGGCATCTGGATTTGCAAATAATTCTGGCCTCTGTGGGTATCCTCTGCCTCAATGCAGGGTTGATTCAGCAGCAAATGCAAACTCTCAGCATCAGAGATCTCATAGGAAACAGGCATCGCTTGCAGGGAGCGTCGCGATGGGGCTACTATTCTCCCTCTTCTGTATATTCGGTCTGATCATAGTCGTCATCGAGATGAAGAAGAGAAGGAAAAACAAGGATGCTGCTCTTGATTCTTATATTGACACTCATTCCCAGTCAGGCAACACAACCACGGTGAACTGGAAGAACACCTGTGTTCGTGAAGCATTGAGCATCAATCTTGCAACATTCGAGAAGCCACTTCGGAAGCTTACGTTTGCAGATCTTCTCGACGCCACCAATGGCTTCCACGACAATACGCTCATTGGTTCGGGGGGTTTCGGGGACGTATATAAGGCTCAATTGAAGGATGGAAGTATTGTAGCCATCAAGAAGCTGATTCATGTCAGTGGACAGGGTGATAGGGAGTTCACTGCAGAAATGGAAACCATTGGCAAAATCAAACACCGAAACCTCGTACCTCTTCTCGGCTACTGCAAAGTCGGAGATGAACGCCTTCTTGTGTACGAATACATGAAATATGGAAGCTTGGAAGACGTTTTACACGACCATAACAAGGCTGGAATCAAACTCAATTGGGCTGCTAGAAGAAAGATTGCCATTGGAGCTGCTAGGGGCCTGGCTTTCCTTCACCACAATTGCATCCCTCACATCATCCACAGGGACATGAAATCCAGCAATGTCTTATTGGATGAGAACTTGGAAGCCAGAGTCTCTGATTTTGGTATGGCTCGACTCATGAGTGCTATGGACACCCATTTGAGTGTCAGCACATTAGCCGGTACCCCCGGTTACGTCCCTCCCGAATATTACCAAAGCTTCCGCTGTTCGACCAAAGGCGATGTGTACAGCTACGGCGTCGTTATGCTCGAGCTTTTGACAGGAAAACGACCCACAGATTCTGCCGATTTTGGGGACAACAACCTCGTCGGATGGGTTAAACAACACGCCAAGTTGGACCTAACCAATGTCTTCGATCCCGAGCTCTTGAAGGAAGATCCCAACCTTAAGATAGAGCTTTTAGAACACTTGAAAGTAGCTGTTGCTTGCTTAGATGATAGGTCCTGGCGGCGTCCAACCATGATCCAAGTGATGACGATGTTCAAGGAAATCCAAGCTGGGTCGGGTATGGATTCGCAATCTACCATCGGATCCGACAACGGTGGATTCAGCATCGACATTGTAGACATGAGCTTAAAGGAAGTACCAGAAGGCAAGTACTAG 3573 45.42 MIPFSPSSSISFLFFFFFLFSLSVFSVSSSHTDAQQLISLKSSLPNPNLLQNWLSNGDPCSFSGVSCKETRVSAIDLSFVSLSSNFSHVFPLLAALDHLESLSLKSTNLTGSISLPAGFKCSPLLSSLDLSLNGLFGSVSDASYLGFCSNIKSLNLSFNAFDFPPKDSAAGLKLDLQVLDLSSNRIVGSKLVPWVLSSGCSNLQFLALKGNKISGEINLSSCNKLQHLDISGNNFSAGIPSLGDCSVLEYLDISGNKFTGDVGNTLSSCLQLRFLNLSSNQFQGSIPSFSSPNLWFLSLANNDFQGEIPVSIDDSCSSLVHLDLSENGLIGGIPSGLGSCSLLESLDISKNNLSGELPIDVFAKMSSLKRLSMSDNKFFGVLSDSLSQLTTLNSLDLSSNNFSGSIPVGLCEDPKNSLKELFLQNNWLTGRIPASISNCSQLVSLDLSFNFLSGTIPSSLGSLSKLKNLIMWLNQLEGEIPSDFKNFQGLENLILDFNELTGTIPSGLSNCTNLNWISLSNNRLSGEIPRWIGQLPSLAILKLSNNSFHGRIPRELGDCRSLIWLDLNTNMLNGTIPRELFRQSGNIAVNFITGKSYAYIKNDGSKQCHGAGNLVEFAGIRQEQVNRISSKSPCNFTRVYKGMTQPTFNHNGSMIFLDLSHNMLSGSIPKEIGSTKYLYILDLGHNRVSGGIPQELGDLTKLNILDLSSNELEGSIPLSLTGLSSLMEIDLSNNHLNGSIPESAQFETFPASGFANNSGLCGYPLPQCRVDSAANANSQHQRSHRKQASLAGSVAMGLLFSLFCIFGLIIVVIEMKKRRKNKDAALDSYIDTHSQSGNTTTVNWKNTCVREALSINLATFEKPLRKLTFADLLDATNGFHDNTLIGSGGFGDVYKAQLKDGSIVAIKKLIHVSGQGDREFTAEMETIGKIKHRNLVPLLGYCKVGDERLLVYEYMKYGSLEDVLHDHNKAGIKLNWAARRKIAIGAARGLAFLHHNCIPHIIHRDMKSSNVLLDENLEARVSDFGMARLMSAMDTHLSVSTLAGTPGYVPPEYYQSFRCSTKGDVYSYGVVMLELLTGKRPTDSADFGDNNLVGWVKQHAKLDLTNVFDPELLKEDPNLKIELLEHLKVAVACLDDRSWRRPTMIQVMTMFKEIQAGSGMDSQSTIGSDNGGFSIDIVDMSLKEVPEGKY 1190
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3611442 3615014 - CmoCh07G007890.1 Cmo07g00789 386097
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g00789 1190 SUPERFAMILY L domain-like 645 764 - -
Cmo07g00789 1190 PANTHER SYSTEMIN RECEPTOR SR160 19 1166 - -
Cmo07g00789 1190 SUPERFAMILY RNI-like 54 287 - -
Cmo07g00789 1190 ProSitePatterns Protein kinases ATP-binding region signature. 885 908 IPR017441 GO:0005524
Cmo07g00789 1190 PRINTS Leucine-rich repeat signature 343 356 - -
Cmo07g00789 1190 PRINTS Leucine-rich repeat signature 699 712 - -
Cmo07g00789 1190 Gene3D Ribonuclease Inhibitor 37 768 IPR032675 -
Cmo07g00789 1190 Pfam Protein kinase domain 879 1148 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo07g00789 1190 Pfam Leucine rich repeat N-terminal domain 32 67 IPR013210 -
Cmo07g00789 1190 Pfam Leucine Rich Repeat 442 463 IPR001611 GO:0005515
Cmo07g00789 1190 Pfam Leucine Rich Repeat 417 439 IPR001611 GO:0005515
Cmo07g00789 1190 CDD STKc_IRAK 885 1154 - -
Cmo07g00789 1190 Gene3D Phosphorylase Kinase; domain 1 839 954 - -
Cmo07g00789 1190 SUPERFAMILY Protein kinase-like (PK-like) 865 1155 IPR011009 -
Cmo07g00789 1190 ProSiteProfiles Protein kinase domain profile. 879 1154 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo07g00789 1190 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 19 1166 - -
Cmo07g00789 1190 Gene3D Transferase(Phosphotransferase) domain 1 955 1156 - -
Cmo07g00789 1190 Pfam Leucine rich repeat 678 736 IPR001611 GO:0005515
Cmo07g00789 1190 Pfam Leucine rich repeat 489 547 IPR001611 GO:0005515
Cmo07g00789 1190 Pfam Leucine rich repeat 343 402 IPR001611 GO:0005515
Cmo07g00789 1190 SMART LRR_typ_2 316 340 IPR003591 -
Cmo07g00789 1190 SMART LRR_typ_2 560 583 IPR003591 -
Cmo07g00789 1190 SMART LRR_typ_2 365 388 IPR003591 -
Cmo07g00789 1190 SMART LRR_typ_2 723 746 IPR003591 -
Cmo07g00789 1190 SMART LRR_typ_2 389 413 IPR003591 -
Cmo07g00789 1190 SMART LRR_typ_2 535 559 IPR003591 -
Cmo07g00789 1190 SMART LRR_typ_2 487 511 IPR003591 -
Cmo07g00789 1190 SMART LRR_typ_2 699 722 IPR003591 -
Cmo07g00789 1190 Pfam Leucine Rich repeat 221 236 IPR001611 GO:0005515
Cmo07g00789 1190 SUPERFAMILY RNI-like 264 579 - -
Cmo07g00789 1190 Gene3D - 590 650 - -
Cmo07g00789 1190 Pfam Brassinosteroid receptor island domain 585 649 IPR045381 -
Cmo07g00789 1190 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1001 1013 IPR008271 GO:0004672|GO:0006468
Cmo07g00789 1190 SMART serkin_6 879 1151 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g00789 Cmo-Chr7:3611442 Cmo15g00912 Cmo-Chr15:4628864 0 dispersed
Cmo10g00228 Cmo-Chr10:1003093 Cmo07g00789 Cmo-Chr7:3611442 9.59E-153 dispersed
Cmo10g00502 Cmo-Chr10:2241061 Cmo07g00789 Cmo-Chr7:3611442 2.49E-16 dispersed
Cmo07g00789 Cmo-Chr7:3611442 Cmo04g02248 Cmo-Chr4:16807180 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74475 PF00069 Pkinase 1.30E-45 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g00789 K13415 - csv:101209118 2042.7