Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g00802 ATGAACACCGCTGGTCGACTCATTGCTGGGTCTCACAATAGAAACGAGTTCGTTCTGATCAATGCAGAGGACTCTGTTCGGACAAAGTCTGTGGAGGAATTGAGTGGACAAACATGTCGGATTTGTGGAGATGAGATAGAGTTAACTGATGAAGGAGAGCTCTTTGTTGCTTGTAATGAATGTGCTTTCCCAGTTTGTAGAACTTGCTATGAGTATGAGCGAAGAGAAGGAAATCAAGCTTGTCCACAGTGTAGAACCAGATACAACCGCATTAAGGGTAGTCCTCGGGTTGAAGGCGATGATGATGACGATGAAGATGACACCGATGATTTGGATAACGAGTTCGACTATGGCAATCTCGATTCGTTTCACCCTCATGCTGTCGATGCATTGTCTGTTTCACGCCTTAACACTAGCCGTGGTTCCCACCGTAATGCATCTCGCATCAATGGACAGTCGGAGCATGAACCGTCTCCCCTTCATTCGGAAATTCCTCTCCTGACATACGGCGAGGAGGATTACAAGATTTCTTCTGATCAACATGCTCTTGTACCCCATTTTATGGATCGTGGAAACAGAGTCCATCCGATGTTGTACCCCGATCCATCGATATCTTCTCAACGTAGACCAATGGTTCCCGAGAAAGATATTGCTGTATATGGTTATGGGAGTGTGGCATGGAAGGACAGAATGGAGGATTGGACGAAGAAGCGATGTGATAAACTTCAAGTGGTGAAGCATCAAGGGGTTGAAGACGGTGGAAATGATATCGACGATCCCGATTTGCCCATGATGGATGAAGCTAGGCAACCGCTATCAAGGAAATTGCCCATCTCTTCGAGCATGATAAACCCGTACAGATTAATCATCTTGCTTCGACTTGTTATTCTCAGCCTGTTTTTCCATTACAGAATTCTTCATCCAGTTAAAGATGCCTATGGCCTGTGGTTGACTTCAGTAATATGTGAAATTTGGTTTGCGGCATCGTGGATTCTCGATCAGTTCCCGAAATGGTATCCGATTGAAAGGGAAACGTATCTCGATAGGCTATCGCTGAGGTATGAAAAAGAAGGGAAACCTACTGAATTAGCCAGCGTGGACGTATTTGTCAGTACCGTTGATCCAACGAAAGAACCTCCACTTATCACTGCTAACACGGTACTTTCCATCCTTGCAGTCGACTATCCTGTCGATAAAGTTGCATGCTATGTCTCAGATGACGGTGCAGCCATGTTAACATTTGAAGCTCTCTCTGAGACATCTGAATTTGCAAGGAAATGGGTTCCTTTCTCTAAGAAATTCAATGTTGAGCCCCGTGCCCCCGAGTTTTACTTTTCTCAGAAGATCGATTATTTGAAGAACAAGGTCCATCCGGAATTTTTCAGGGAAAGACGAGCAATGAAGAGAGAATACGAAGAATTTAAGGTTCGGATAAATGCGCTGGTCTCCATGGCTCAAAAGGTCCCTGAGGATGGCTGGACAATGCAAGACGGTACTCCATGGCCCGGGAACAACGTTCGAGACCACCCTGGCATGATTCAGGTCTTCCTTGGCCAGAATGGTGTTTGTGACATTGAAGGAAACGAGCTGCCATGTTTGGTTTACGTTTCTCGTGAAAAGCGACCCGGGTTTGAACATCACAAGAAGGCCGGGGCCATGAATGCACTGGTTCGAGTCTCGGCGGTTCTGTCAAATGCTCCTTATCTACTCAATGTCGACTGCGATCATTACATTAACAATAGCAAGGCACTTAGAGAAGCTATGTGTTTCATGATGGATCCGACGTCCGGGAAGAAAGTTTGTTATGTGCAGTTTCCTCAAAGATTTGATGGGATTGATCGACATGATCGATACTCAAATCGGAATGTTGTGTTCTTTGATATCAACATGAAAGGATTAGACGGAGTACAAGGACCGATATATGTCGGTACGGGATGTGTTTTCCGAAGGGTTGCCCTCTACGGTAATGACGCTCCTGCCAAGAAGAAACGCCCGAGCAAAACATGCAACTGCTTGCCAAAATGGTGCTGTCTGTGTTGTGGGTCTAGAAGGAACAAGAACGAGAAGAAGAAGAAGACAACACAGATCCATGCGCTCGAGAATATCGAGGGAATCGAAGAACTAAGCATAGAGAAATTGAACGTGTCCGAAACTAAATTAGCGAAGAAATTCGGGCAATCTCCGGTGTTTGTCGCGTCGACCGTGTCGGAAAGTGGAGGAAGTCGTCATGATGTGAGTGCTGCCTCACTGCTAAGAGAAGGCATTCAAGTTATCAGTTGTGGTTATGAAGATAAAACAGAATGGGGGAAAGAGGTTGGGTGGATATATGGTTCTGTTACTGAAGATATCTTGACTGGATTTAAGATGCACTGTCACGGTTGGCGGTCTGTGTACTGTATTCCCGAGAGGCCTGCTTTTAAAGGGTCGGCTCCGATTAACCTCTCCGATCGTCTAAACCAAGTTTTGCGGTGGGCTCTAGGATCTGTTGAGATATTCTTGAGCAGACATTGTCCGATCTGGTATGGCTATGGAGGCGGGTTGAAATGGTTGGAACGATTTTCGTACATAAACTCGGTGGTCTTTCCGTGGACCTCGATTCCATTGCTTGTTTACTGTAGCCTGCCTGCTATCTGTCTTCTCACCGGAAAGTTTATTGTCCCTGAGATAAGCAACTATGCCAGTCTTATTTTCATGGCACTCTTCATTTCAATTGCTGCGACTGGTATCCTCGAGATGCAATGGGGTGGTATTGGCATCGACGACTGGTGGAGAAACGAGCAGTTTTGGGTTATCGGAGGCGTTTCGTCGCATCTTTTTGCTCTTTTCCAAGGTCTACTCAAGGTTTTAGCTGGTGTCAGCACCAACTTCACAGTTACATCCAAAGCAGCCGATGGCAAATTTTCAGAGATCTATATGTTCAAATGGACATCATTATTAATACCTCCCACGACCTTGTTGATCATAAACATCGTCGGCGTGATCGTCGGGATCTCAGACGCCATCAACAATGGATACGACTCGTGGGGTCCTCTTTTCGGAAGGCTATTTTTTGCTCTTTGGGTGATCATCCACCTCTACCCATTCTTGAAGGGATTGGTAGGGAAACAAGATCGTCTACCAACAATCATTGTTGTTTGGTCCATTCTTTTAGCCTCAATCTTAACATTACTTTGGGTAAGGATCAACCCATTTGTATCCAAAGACGGCCCCGTTCTAGAAGTTTGCGGGTTGAACTGTGATTAG 3243 45.58 MNTAGRLIAGSHNRNEFVLINAEDSVRTKSVEELSGQTCRICGDEIELTDEGELFVACNECAFPVCRTCYEYERREGNQACPQCRTRYNRIKGSPRVEGDDDDDEDDTDDLDNEFDYGNLDSFHPHAVDALSVSRLNTSRGSHRNASRINGQSEHEPSPLHSEIPLLTYGEEDYKISSDQHALVPHFMDRGNRVHPMLYPDPSISSQRRPMVPEKDIAVYGYGSVAWKDRMEDWTKKRCDKLQVVKHQGVEDGGNDIDDPDLPMMDEARQPLSRKLPISSSMINPYRLIILLRLVILSLFFHYRILHPVKDAYGLWLTSVICEIWFAASWILDQFPKWYPIERETYLDRLSLRYEKEGKPTELASVDVFVSTVDPTKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFSKKFNVEPRAPEFYFSQKIDYLKNKVHPEFFRERRAMKREYEEFKVRINALVSMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNGVCDIEGNELPCLVYVSREKRPGFEHHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKVCYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGVQGPIYVGTGCVFRRVALYGNDAPAKKKRPSKTCNCLPKWCCLCCGSRRNKNEKKKKTTQIHALENIEGIEELSIEKLNVSETKLAKKFGQSPVFVASTVSESGGSRHDVSAASLLREGIQVISCGYEDKTEWGKEVGWIYGSVTEDILTGFKMHCHGWRSVYCIPERPAFKGSAPINLSDRLNQVLRWALGSVEIFLSRHCPIWYGYGGGLKWLERFSYINSVVFPWTSIPLLVYCSLPAICLLTGKFIVPEISNYASLIFMALFISIAATGILEMQWGGIGIDDWWRNEQFWVIGGVSSHLFALFQGLLKVLAGVSTNFTVTSKAADGKFSEIYMFKWTSLLIPPTTLLIINIVGVIVGISDAINNGYDSWGPLFGRLFFALWVIIHLYPFLKGLVGKQDRLPTIIVVWSILLASILTLLWVRINPFVSKDGPVLEVCGLNCD 1080
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3683908 3689379 - CmoCh07G008020.1 Cmo07g00802 386110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g00802 1080 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 113 IPR013083 -
Cmo07g00802 1080 MobiDBLite consensus disorder prediction 136 157 - -
Cmo07g00802 1080 MobiDBLite consensus disorder prediction 92 118 - -
Cmo07g00802 1080 CDD mRING-HC-C4C4_CesA_plant 37 87 - -
Cmo07g00802 1080 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 9 [UDP-FORMING]-RELATED 1 1079 - -
Cmo07g00802 1080 SUPERFAMILY RING/U-box 26 108 - -
Cmo07g00802 1080 Pfam Cellulose synthase 366 1068 IPR005150 GO:0016020|GO:0016760|GO:0030244
Cmo07g00802 1080 SUPERFAMILY Nucleotide-diphospho-sugar transferases 375 900 IPR029044 -
Cmo07g00802 1080 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 1 1079 - -
Cmo07g00802 1080 ProSiteProfiles Zinc finger RING-type profile. 39 85 IPR001841 -
Cmo07g00802 1080 MobiDBLite consensus disorder prediction 136 161 - -
Cmo07g00802 1080 Pfam Zinc-binding RING-finger 29 105 IPR027934 -
Cmo07g00802 1080 MobiDBLite consensus disorder prediction 99 116 - -
Cmo07g00802 1080 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 525 658 IPR029044 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo03g01063 Cmo07g00802 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g00802 Cmo-Chr7:3683908 Cmo09g01185 Cmo-Chr9:8679508 0 dispersed
Cmo03g01063 Cmo-Chr3:7914116 Cmo07g00802 Cmo-Chr7:3683908 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g00802 K10999 - csv:101211094 1976.44