Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g00807 ATGGCCGATGCTGAGGATATTCAGCCACTTGTTTGTGACAATGGAACTGGAATGGTGAAGGCCGGTTTTGCTGGTGATGATGCTCCGAGGGCAGTTTTCCCAAGTATTGTTGGTCGTCCCCGACATACTGGTGTCATGGTTGGTATGGGCCAAAAAGATGCCTATGTTGGGGATGAAGCTCAGTCTAAGAGAGGTATCCTTACCTTGAAATATCCCATTGAACATGGTATTGTCAGTAACTGGGATGACATGGAGAAGATTTGGCATCACACGTTCTACAATGAGCTCCGTGTTGCTCCTGAAGAGCACCCCGTGCTTCTGACTGAGGCTCCACTCAACCCAAAGGCTAACAGAGAAAAGATGACTCAAATCATGTTTGAGACATTCAATGTGCCTGCCATGTACGTTGCCATTCAGGCCGTTCTATCACTCTATGCTAGTGGACGTACAACTGGTATCGTGCTGGATTCTGGTGATGGTGTGAGTCACACCGTTCCCATCTATGAGGGTTATGCTCTCCCTCATGCCATTCTCCGTTTGGACCTTGCTGGTCGTGATCTCACTGATGCTCTAATGAAGATCCTCACTGAAAGAGGTTACATGTTTACCACTACTGCCGAACGGGAAATTGTCCGTGACATGAAGGAGAAGTTGGCTTATGTTGCTCTTGACTACGAACAAGAACTCGAGACTGCAAAGAGCAGTTCCTCAATTGAGAAGAACTACGAACTGCCTGATGGACAAGTCATCACCATTGGAGCTGAGAGATTCCGTTGCCCAGAAGTCCTATTCCAGCCATCTCTCATCGGTATGGAAGCTGCAGGAATCCACGAAACTACCTACAACTCCATCATGAAGTGTGATGTCGATATCAGAAAGGACCTTTATGGAAACATCGTCCTCAGTGGTGGTTCAACCATGTTCCCTGGTATTGCTGACAGGATGAGCAAGGAAATCACAGCCCTTGCTCCCAGCAGCATGAAGATTAAGGTCGTTGCCCCACCAGAAAGGAAATACAGTGTCTGGATTGGAGGGTCTATTCTTGCATCTCTAAGCACCTTCCAGCAGATGTGGATTTCAAAGGGTGAATACGACGAGTCGGGTCCATCCATTGTCCACAGGAAGTGCTTCTAA 1134 47.71 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSIEKNYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3719562 3722299 - CmoCh07G008070.1 Cmo07g00807 386115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g00807 377 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Cmo07g00807 377 SUPERFAMILY Actin-like ATPase domain 148 377 IPR043129 -
Cmo07g00807 377 Gene3D - 10 371 - -
Cmo07g00807 377 PRINTS Actin signature 28 37 IPR004000 -
Cmo07g00807 377 PRINTS Actin signature 51 62 IPR004000 -
Cmo07g00807 377 PRINTS Actin signature 63 85 IPR004000 -
Cmo07g00807 377 PRINTS Actin signature 117 130 IPR004000 -
Cmo07g00807 377 PRINTS Actin signature 142 161 IPR004000 -
Cmo07g00807 377 PRINTS Actin signature 238 254 IPR004000 -
Cmo07g00807 377 Gene3D - 140 340 - -
Cmo07g00807 377 PANTHER ACTIN 1 376 IPR004000 -
Cmo07g00807 377 SMART actin_3 7 377 IPR004000 -
Cmo07g00807 377 Gene3D Actin; Chain A, domain 4 182 273 - -
Cmo07g00807 377 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Cmo07g00807 377 PANTHER ACTIN 1 376 - -
Cmo07g00807 377 Pfam Actin 5 377 IPR004000 -
Cmo07g00807 377 ProSitePatterns Actins signature 2. 358 366 IPR004001 -
Cmo07g00807 377 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Cmo07g00807 377 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo07g00807 Cmo20g01080 CCT
Cmo02g00620 Cmo07g00807 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00620 Cmo-Chr2:3851300 Cmo07g00807 Cmo-Chr7:3719562 0 dispersed
Cmo07g00807 Cmo-Chr7:3719562 Cmo20g01080 Cmo-Chr20:10245769 0 dispersed
Cmo03g01068 Cmo-Chr3:7950941 Cmo07g00807 Cmo-Chr7:3719562 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g00807 K10355 - csv:101215469 758.059