Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g00812 ATGGTGAGAGATGACTTGTGTATTACAATTCCGAGCGATTTCAGATGTCCGATCTCGCTTGACGTCATGAAATCCCCTGTAAGTTTGTGTACCGGAGTTACTTACGATCGTTCCAGTATCCAGAAATGGCTCGACAATGGAAACAATACTTGTCCGGCTACCATGCAGATCCTTCAAACGAAGGAGTTCGTCCCTAACCACAATCTCCACCGCCTTATTCAGATTTGGTCCGATTCCCTTCGGCAAAGAGTCCACTCGCCCGATTCCTCCCCTGTTTCTGACTCTGTTCTTTCCTCCGATCAAGTTCTTGACCTCGTCAAGCGCATAGAGATCGATCAGTCTCGCACCGACTCGCTTCTGCGGCTTGTCTCTTTCGCCGCTAAATCGGTGGAGAATCGGAGGCTTCTCTGTGGAATCGGCGGTTTCGTGCCGGTTCTTGTCGATCTTCTTAGCAATGTCAATGGCGGCGTTTTGGTTGAGCAGACTGTGAGGTTATTGCATTTGATTCGAAATGAAATAGAAGATAAGGAGCGATTTGTGAAATCGATGTTGAAGAGCGATCGTAATTGTCTTTCGTCTCTGCTTCTGATTCTGCGGAAAGGAACCGTCGAATTGAAAATCTGTTCTGCTAGTCTACTAGAGCATCTCGCAATCGACGCCGAATCGAAGATTGTAATCGCCGAAACGGATGGATTGATGCAAGAATTACTGAAATTAACAAACTCTGAGAACGATTCAAACCTAATCGAATCGGTTCTATCGTGTTTAATTTCAATTTCAATGCCGAAACGGATCAAAATCAAATTAGTCCATCTCGGAGCGATAAAATCGGTAACGAAGCTTCTCTCAGAAGCGAACTCAAGTTCGAGCGTTTCAATAACGGAGAAGGTTCTGAAAGTGCTGGAAACAGCGTCGACGGTGTGGGAAGGAAGGATGGAGATCGGAGAGGACTCAACGTGCTTAGCAGCGATCGTACAAAAGGTACTGAAGGTGTCGAACACGGCGACGGAGCACGCGGTGACGACGCTGTGGAGCGTGTGCTATCTGTTCAGAGATGAGAAGGCAGCAGAGGCGTTAACGAAGGCGAACGGATTGACGAAGATTTTACTGCTAATGCAGAGCAATTGCTCGCCACCAGTACGACAGATGGCGAGAGATTTGCTGAAGATTTTCCGAATCAATTCGAAATCGTGCCTAGCGAGTTACGACACGAAAACTACGCACATCATGCCCTGTTAG 1239 47.22 MVRDDLCITIPSDFRCPISLDVMKSPVSLCTGVTYDRSSIQKWLDNGNNTCPATMQILQTKEFVPNHNLHRLIQIWSDSLRQRVHSPDSSPVSDSVLSSDQVLDLVKRIEIDQSRTDSLLRLVSFAAKSVENRRLLCGIGGFVPVLVDLLSNVNGGVLVEQTVRLLHLIRNEIEDKERFVKSMLKSDRNCLSSLLLILRKGTVELKICSASLLEHLAIDAESKIVIAETDGLMQELLKLTNSENDSNLIESVLSCLISISMPKRIKIKLVHLGAIKSVTKLLSEANSSSSVSITEKVLKVLETASTVWEGRMEIGEDSTCLAAIVQKVLKVSNTATEHAVTTLWSVCYLFRDEKAAEALTKANGLTKILLLMQSNCSPPVRQMARDLLKIFRINSKSCLASYDTKTTHIMPC 412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3753755 3754993 + CmoCh07G008120.1 Cmo07g00812 386120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g00812 412 PANTHER WDSAM1 PROTEIN 4 412 IPR045185 GO:0061630
Cmo07g00812 412 Pfam U-box domain 10 78 IPR003613 GO:0004842|GO:0016567
Cmo07g00812 412 SUPERFAMILY ARM repeat 115 394 IPR016024 -
Cmo07g00812 412 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 76 IPR013083 -
Cmo07g00812 412 CDD RING-Ubox_PUB 14 56 IPR045210 -
Cmo07g00812 412 ProSiteProfiles U-box domain profile. 9 83 IPR003613 GO:0004842|GO:0016567
Cmo07g00812 412 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 27-RELATED 4 412 - -
Cmo07g00812 412 SUPERFAMILY RING/U-box 6 78 - -
Cmo07g00812 412 Gene3D - 77 401 IPR011989 -
Cmo07g00812 412 SMART Ubox_2 13 76 IPR003613 GO:0004842|GO:0016567
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g00625 Cmo07g00812 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00625 Cmo-Chr2:3880872 Cmo07g00812 Cmo-Chr7:3753755 2.45E-134 dispersed
Cmo07g00812 Cmo-Chr7:3753755 Cmo09g00300 Cmo-Chr9:1303514 7.55E-40 dispersed
Cmo07g00812 Cmo-Chr7:3753755 Cmo04g00079 Cmo-Chr4:427713 7.94E-44 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g00812 - - cmax:111478747 696.041