Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo07g00819 | ATGGACCCCCATCACCTCCCAAACCCCTCTCCCCATCTCCAATTTTCCGCCCTCGACGATCCCGACATCGTTCACCTTCACCATGTTCACGAGCTCAGTTCTATTTGGCCGTCGTTGTTGTTGCCTCATCAACCGCTCCCTACCTCATCCACCCACCTGATGTCAGGCTACGGTAATGATCAAGAAGAGCCAGAAGAAGAGCTTGGTGCTATGAAGGAGATGATGTACAAGATCGCCGCGATGCAGCCAGTCGATATCGACCCATCAACTATTCGAAAACCCAAGAGACGAAACGTTCGAATTAGCGACGACCCACAAAGCATTGCCGCTCGTCTTCGTCGAGAAAGAATCAGCGAAAAGATCAGAATTCTTCAAAGGCTCGTCCCCGGAGGAACAAAGATGGATACAGCTTCAATGCTAGATGAAGCCATTAGGTATGTCAAGTTCTTGAAAAGACAAATCCAATTTCTTCAGTCAACTCAGCCGAGCACCGGCGACAGCGCAGTCGCCGGAGGGTGGCCATTTCCATTCCATAAGGCTAATACTTCAAACTCCTCGTCCACTTCCATGGAAGCTACTCCAACCATTATGCCATCAGGATGCCCTAAAATTTCTCCTGCGATTACTCACTTGATTGTTCAAAATTCGGAGCAGGACGAAGAAATAAAGAGTGGAACGCTTCAAATCAACTGGCTCGACTCAAAGTCAGTGCTCACCCTAGACCTTCATCCACTTTCATCTCTCCTTGCAACCGGCGGGGCTGATTTCGTTATCAAGGACAGAATAAAGCCCCTGGTTCTGCTGTTAATAGATAGCCTTCGCTTCTCACATTCTGGAGGTGAGCTGATCATATGGAAATTGCACCATTTGGAAAGTGGCCAGACTTGGAAGGTCCTGGAGACGTTATTGCAAGGCTTATAA | 921 | 48.43 | MDPHHLPNPSPHLQFSALDDPDIVHLHHVHELSSIWPSLLLPHQPLPTSSTHLMSGYGNDQEEPEEELGAMKEMMYKIAAMQPVDIDPSTIRKPKRRNVRISDDPQSIAARLRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIQFLQSTQPSTGDSAVAGGWPFPFHKANTSNSSSTSMEATPTIMPSGCPKISPAITHLIVQNSEQDEEIKSGTLQINWLDSKSVLTLDLHPLSSLLATGGADFVIKDRIKPLVLLLIDSLRFSHSGGELIIWKLHHLESGQTWKVLETLLQGL | 306 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 3798815 | 3805601 | + | CmoCh07G008190.1 | Cmo07g00819 | 386127 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo07g00819 | 306 | Pfam | Helix-loop-helix DNA-binding domain | 110 | 150 | IPR011598 | GO:0046983 | |
Cmo07g00819 | 306 | PANTHER | TRANSCRIPTION FACTOR HEC3-RELATED | 55 | 195 | IPR045843 | GO:0003700|GO:0006355 | |
Cmo07g00819 | 306 | Gene3D | - | 104 | 167 | IPR036638 | GO:0046983 | |
Cmo07g00819 | 306 | SMART | finulus | 107 | 156 | IPR011598 | GO:0046983 | |
Cmo07g00819 | 306 | CDD | bHLH_AtIND_like | 102 | 159 | - | - | |
Cmo07g00819 | 306 | PANTHER | TRANSCRIPTION FACTOR HEC3-RELATED | 55 | 195 | - | - | |
Cmo07g00819 | 306 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 101 | 150 | IPR011598 | GO:0046983 | |
Cmo07g00819 | 306 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 106 | 159 | IPR036638 | GO:0046983 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo03g01075 | Cmo07g00819 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo02g00585 | Cmo-Chr2:3473200 | Cmo07g00819 | Cmo-Chr7:3798815 | 1.40E-45 | dispersed | |
Cmo03g01076 | Cmo-Chr3:8048733 | Cmo07g00819 | Cmo-Chr7:3798815 | 6.94E-24 | dispersed | |
Cmo05g00176 | Cmo-Chr5:764159 | Cmo07g00819 | Cmo-Chr7:3798815 | 1.17E-47 | dispersed | |
Cmo07g00819 | Cmo-Chr7:3798815 | Cmo09g00229 | Cmo-Chr9:1062565 | 9.36E-38 | dispersed | |
Cmo07g01131 | Cmo-Chr7:5963757 | Cmo07g00819 | Cmo-Chr7:3798815 | 2.22E-22 | dispersed | |
Cmo03g01075 | Cmo-Chr3:8046980 | Cmo07g00819 | Cmo-Chr7:3798815 | 1.73E-92 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
10152 | PF00010 | HLH | 2.20E-06 | No_clan | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo07g00819 | - | - | csv:101222266 | 298.13 |