Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g00819 ATGGACCCCCATCACCTCCCAAACCCCTCTCCCCATCTCCAATTTTCCGCCCTCGACGATCCCGACATCGTTCACCTTCACCATGTTCACGAGCTCAGTTCTATTTGGCCGTCGTTGTTGTTGCCTCATCAACCGCTCCCTACCTCATCCACCCACCTGATGTCAGGCTACGGTAATGATCAAGAAGAGCCAGAAGAAGAGCTTGGTGCTATGAAGGAGATGATGTACAAGATCGCCGCGATGCAGCCAGTCGATATCGACCCATCAACTATTCGAAAACCCAAGAGACGAAACGTTCGAATTAGCGACGACCCACAAAGCATTGCCGCTCGTCTTCGTCGAGAAAGAATCAGCGAAAAGATCAGAATTCTTCAAAGGCTCGTCCCCGGAGGAACAAAGATGGATACAGCTTCAATGCTAGATGAAGCCATTAGGTATGTCAAGTTCTTGAAAAGACAAATCCAATTTCTTCAGTCAACTCAGCCGAGCACCGGCGACAGCGCAGTCGCCGGAGGGTGGCCATTTCCATTCCATAAGGCTAATACTTCAAACTCCTCGTCCACTTCCATGGAAGCTACTCCAACCATTATGCCATCAGGATGCCCTAAAATTTCTCCTGCGATTACTCACTTGATTGTTCAAAATTCGGAGCAGGACGAAGAAATAAAGAGTGGAACGCTTCAAATCAACTGGCTCGACTCAAAGTCAGTGCTCACCCTAGACCTTCATCCACTTTCATCTCTCCTTGCAACCGGCGGGGCTGATTTCGTTATCAAGGACAGAATAAAGCCCCTGGTTCTGCTGTTAATAGATAGCCTTCGCTTCTCACATTCTGGAGGTGAGCTGATCATATGGAAATTGCACCATTTGGAAAGTGGCCAGACTTGGAAGGTCCTGGAGACGTTATTGCAAGGCTTATAA 921 48.43 MDPHHLPNPSPHLQFSALDDPDIVHLHHVHELSSIWPSLLLPHQPLPTSSTHLMSGYGNDQEEPEEELGAMKEMMYKIAAMQPVDIDPSTIRKPKRRNVRISDDPQSIAARLRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIQFLQSTQPSTGDSAVAGGWPFPFHKANTSNSSSTSMEATPTIMPSGCPKISPAITHLIVQNSEQDEEIKSGTLQINWLDSKSVLTLDLHPLSSLLATGGADFVIKDRIKPLVLLLIDSLRFSHSGGELIIWKLHHLESGQTWKVLETLLQGL 306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3798815 3805601 + CmoCh07G008190.1 Cmo07g00819 386127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g00819 306 Pfam Helix-loop-helix DNA-binding domain 110 150 IPR011598 GO:0046983
Cmo07g00819 306 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 55 195 IPR045843 GO:0003700|GO:0006355
Cmo07g00819 306 Gene3D - 104 167 IPR036638 GO:0046983
Cmo07g00819 306 SMART finulus 107 156 IPR011598 GO:0046983
Cmo07g00819 306 CDD bHLH_AtIND_like 102 159 - -
Cmo07g00819 306 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 55 195 - -
Cmo07g00819 306 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 101 150 IPR011598 GO:0046983
Cmo07g00819 306 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 106 159 IPR036638 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo03g01075 Cmo07g00819 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00585 Cmo-Chr2:3473200 Cmo07g00819 Cmo-Chr7:3798815 1.40E-45 dispersed
Cmo03g01076 Cmo-Chr3:8048733 Cmo07g00819 Cmo-Chr7:3798815 6.94E-24 dispersed
Cmo05g00176 Cmo-Chr5:764159 Cmo07g00819 Cmo-Chr7:3798815 1.17E-47 dispersed
Cmo07g00819 Cmo-Chr7:3798815 Cmo09g00229 Cmo-Chr9:1062565 9.36E-38 dispersed
Cmo07g01131 Cmo-Chr7:5963757 Cmo07g00819 Cmo-Chr7:3798815 2.22E-22 dispersed
Cmo03g01075 Cmo-Chr3:8046980 Cmo07g00819 Cmo-Chr7:3798815 1.73E-92 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10152 PF00010 HLH 2.20E-06 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g00819 - - csv:101222266 298.13