Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g00821 ATGGAGTTGAAGGTGGAGAAGCCCACGTTGAGAAAAGCTCCCCATGTCGGTGAAACTTACAGGAGTGCCAGAGTGTATGCAGAAGCCGCCGGAGAAGATGAAAAAAGTGGCAGCACTGTCCATACTGGCGACGGAGATTATCAAGTTTGCAGTCGGTCGAGGACGTTTCAGACGGTGAAGATCGATGGCGTTCCTTTCTCCGGCAAGGTGGAGGAAAGGCTTGATTGGTTGCGTTCTCAGATTATAGGTGGAGATGCAGAGTTTGATTCTCCATTTGGAGAAAGGAGATTGTGTTATGCTGATCATACAGCTTCTGGTCGTTCTCTTCGTTATATTGAAGATTTCATCCTCAGAAACGTTCTTCCCTTTTATGGCAACACGCACACATGCGACAGCTACGTAGGCCAGCATACAACAAAGATGGTGACCGATGCAACGACGTACATCAAGAGGTACTTGGGCGGTGGAGAAGAAGAAGCACTTCTATTCTGTGGACAAGGCACAACGTCTGCCATTAAAAGACTGCAAGAGGTGATGGGCATTGCAGTGCCATCCATTCTGAGGGAGAGGGTAATAGAGACCCTAAAGGAAGAAGAAAGGTGGGTAGTTTTTGTTGGACCTTATGAGCATCACTCCAACCTCCTCTCATGGCGGCAGAGTTTGGCTGAGGTGGTGGAGATTGGAATGGATGAGAATGGGCTTTTAGACGTTGAGATGCTCAGATCTCAACTTGAGGCATATAAGAAAGCTGGAAATAGGCCAATTTTGGGATCTTTCTCAGCTTGTAGTAATGTCACTGGAATTTATTCAGATACAAGAGCTATTTCTACACTTCTTCATCAATATGGAGGCCATGTTTGCTTTGATTTTGCTGCAAGTGGTCCTTACGTGCAAATTGATATGCGGTCGGGGGAAATCGATGGCTATGATGCTATTTTCTTAAGTACACATAAGTTTCTTGGAGGACCTGGCTCACCTGGAATCCTTCTGATGAACAAAAGTCTTTATAAATTGAAATCATCTCCTCCATCAACTTGTGGGGGTGGCACTGTGAACTATGTCAATGGCTTCAGTGAAAAGGACACACTGTATTATGAAGACATAGAAGAGAGGGAAAATGGTGGAACACCACAGATTATAGGAATAATTAGAGCAGCTTTGGCTTTTTGGGTAAAAGAATACATCACCTACCAAGAGATAGAGAAGCGAGAGCACCAGTATGTAGAAAGGGGTTTGAAGAAACTTCACCAGAATAGAAACATCTGCATTTTAGGGAGGACGTCTTCTAAGCGACAGGCCATATTATCTTTTATCATTTACTCTTCGACGAACTCGTCGCTCAACTGTATCACAGATAAATTATGTACAACTAACATCAGAGAAAAGGATGAAAAGCTTTACATGTGGGGAGAGATGGGGTGTATGAGAGCAAAACCTCTTCATGGTCCTTTTGTTGCAGCACTCCTGAGCGACCTGTTCGGCATTCAGGCTCGTGGGGGATGCAGTTGTGCGGGACCTTATGGTCACAAACTGCTAAACATTGATGAAGCATGCTCGCACGCGTACAGATCTGCCATTGCTAAGGGGTATGCTGGAATAAAACCTGGATGGACAAGAGTAAGCTTTCCCTACTACATGCCAAATGAGGAGTTTGAGTTCATTTTAAAAGCTTTGGAATTCATAGCTGATTATGGACAAAGATTCCTTCCCTTGTATGCCTTCAATTTGAGAACTGGGAGCTGGACTCTGAAGAAAAAAGACCTCGCCAACCTACTCGAAAAGGAGAATTACAGTAATGGTCAGATCTTAACATTAGAAAACCAGTGTGCCAATGCAGAGGCTAAGTTAGCAGCAATAGAGCTGGAGACCACTTCTCTCGTGTTCAACGTCAAGTAA 1896 44.41 MELKVEKPTLRKAPHVGETYRSARVYAEAAGEDEKSGSTVHTGDGDYQVCSRSRTFQTVKIDGVPFSGKVEERLDWLRSQIIGGDAEFDSPFGERRLCYADHTASGRSLRYIEDFILRNVLPFYGNTHTCDSYVGQHTTKMVTDATTYIKRYLGGGEEEALLFCGQGTTSAIKRLQEVMGIAVPSILRERVIETLKEEERWVVFVGPYEHHSNLLSWRQSLAEVVEIGMDENGLLDVEMLRSQLEAYKKAGNRPILGSFSACSNVTGIYSDTRAISTLLHQYGGHVCFDFAASGPYVQIDMRSGEIDGYDAIFLSTHKFLGGPGSPGILLMNKSLYKLKSSPPSTCGGGTVNYVNGFSEKDTLYYEDIEERENGGTPQIIGIIRAALAFWVKEYITYQEIEKREHQYVERGLKKLHQNRNICILGRTSSKRQAILSFIIYSSTNSSLNCITDKLCTTNIREKDEKLYMWGEMGCMRAKPLHGPFVAALLSDLFGIQARGGCSCAGPYGHKLLNIDEACSHAYRSAIAKGYAGIKPGWTRVSFPYYMPNEEFEFILKALEFIADYGQRFLPLYAFNLRTGSWTLKKKDLANLLEKENYSNGQILTLENQCANAEAKLAAIELETTSLVFNVK 631
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3832096 3838560 + CmoCh07G008210.1 Cmo07g00821 386129

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g00821 631 Coils Coil 602 622 - -
Cmo07g00821 631 Gene3D - 116 355 IPR015421 GO:0003824
Cmo07g00821 631 PANTHER - 43 595 - -
Cmo07g00821 631 Pfam Aminotransferase class-V 120 440 IPR000192 -
Cmo07g00821 631 Gene3D Aspartate Aminotransferase, domain 1 382 566 IPR015422 GO:0003824
Cmo07g00821 631 SUPERFAMILY PLP-dependent transferases 91 559 IPR015424 -
Cmo07g00821 631 PANTHER CYSTEINE DESULFURASE 43 595 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g00821 - - - cmax:111497234 1222.22
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g01077 Cmo-Chr3:8058099 Cmo07g00821 Cmo-Chr7:3832096 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1289 . . . Bda10g00393 . . . Bma15g00795 . . . Cma07g00799 . Car07g00786 Sed14g0225 . . Bhi03g01355 Tan03g1312 Cmetu08g1351 . Hepe04g1115 . . . . . . . . . . . . . . . . . . . . . Bpe10g00255 . . . . . Cmo07g00821 . . . . . . . . . . . . . . . . . . . . . . Chy02g01051 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005411 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 3 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo07g00821 Cmo_Chr07 FPKM 3.077263 2.588636 0.0 0.0 0.0 0.0 0.0 0.351927 0.716107 0.823213