Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g00828 ATGGAGGATTCTTCCCGGAAAAAATCCGGCTCAGTTTGGGAGCCTCGTTCTCGTCGGAGATCTTGGTGTTGTTCGTTTGCGGTGCCGCCGTCCAGTCCCGATAACTTCGTGATTTCTCGGTCTAAAACCCCTCGAAATAAGTCGGAGAGTGTAGCGAAACCTAATATCTCTGTGCCCAATTCGCCTCAGAGTTCCAAATCTGGGTTGGGGTTGGTCGGTCGGATTGACCCTCGAAGGATCTTGTCTCCGGGGAGGGTTTCGCCGATTGATTCCGACCAGAATGTTGAGGGTTTGGCTCAAGAAATGGGCACTGAGAACTCTGCAGTTATCGATTCGATCATCCAACCGCGAGTTGAAAGCTTTCGAGCCCCAAAGGAGAAATATCGCGATCCTCCAGCTAGCTTGTCCCGCACTGGTTCGATTGCTGGATATGATAAGAAGGATGTGTTTGATGTGAGGTTGAATTTGAGGGGAAAAAACGGCGGCTGCTTGGTTTTGGAGTTGAATTCAGAGGCATTGTGTGCTAATTCAGAGGTTTTTTCTGAGCTGATTGTGAAACACAAGAAGGATTTAGCATCAAATGGCAGCCCTTCGCGTTCTAAATTGTGTAGAATTGAAGTTCCTGAGGTGGATAACTTGGGGGTGTTTAGGGACACCATTGAGCTTATGTTTGAGGATGATATTTCAAAATGGCTCGTGAAGGTCGGCGTCTACAGGGCTATCGACATACTTGAGGTATCTGCAGGTATCATGTTCACAAAGTGTGTTGCTTCATGTTTAAACTACTTAGAGGCCGTGCCTTGGACAGAAGAGGAAGAAGAGAAACTGAGGAATCTGTTCTTAAAAGTCAAGTTCGACGATGCAACGAGTAGAGATGTCATGGCCAGACTACGCTCGCTCGACTCAGTAACTTCACAGCAATGTGTAGCCAGACAGCTTGTTTGGTCTATTTCCACGTGTACGAATTCCGTTGCAAGGAACGAACTGAAGTGTTTAGTCAAGGCCCTTCTGTGCAAAAGCTCAGTCTATGAGAAACATCATCTAGACCTCAGTAAAGAAGACCTTTATGCAGTTTTCCATACTTGTCTAGCTTCTTTAGTCAGCCTCTTGAAGGGATCCTCGGACAGCGTCTCCCCTGAAAGATGCTTAAAGAATATAACCCCGAAGCCATTAATCGAACAAATCGCACTGGAGGTCGATAACATCAACTGGCTGCTTGAAATCTTACTAGATTGGCAAATGGCTGAAGAATTCGTCAACATATGGGCAGATCAGAAAGAACTGATTAGGATGCACGAGAACACTTCACCGATGGTTCGGTACGAGCTTAGTCGAGTTTCAGCTTACTTATTCATTGCAATGGGGACGAGAAAACTGAATTGTCGTTCAGAATCACGGTCGAGCCTGCTACAGGCATGGTTTGGTCCAATGCTACTAGACTTCAGCTGGTTACAGCGCTGCAAAAAGGGACTGGATATGAAACTACTGGAGGAAGCCATGGGTCAGGTATTGCTTACTCTACCTATGAAGCAACAACATTTGCTATTCATGGACTGGTGTCGGTTCTTCTCGAAGCGCGGTACCGAGTGTCCTAATCTTAGCAAGTCGTTCCAAATATGGTGGCGTCGTTCGTTCCTTAGAGGGTCGGAGACCTACTCCATTGAATCTAGGTAA 1674 46.54 MEDSSRKKSGSVWEPRSRRRSWCCSFAVPPSSPDNFVISRSKTPRNKSESVAKPNISVPNSPQSSKSGLGLVGRIDPRRILSPGRVSPIDSDQNVEGLAQEMGTENSAVIDSIIQPRVESFRAPKEKYRDPPASLSRTGSIAGYDKKDVFDVRLNLRGKNGGCLVLELNSEALCANSEVFSELIVKHKKDLASNGSPSRSKLCRIEVPEVDNLGVFRDTIELMFEDDISKWLVKVGVYRAIDILEVSAGIMFTKCVASCLNYLEAVPWTEEEEEKLRNLFLKVKFDDATSRDVMARLRSLDSVTSQQCVARQLVWSISTCTNSVARNELKCLVKALLCKSSVYEKHHLDLSKEDLYAVFHTCLASLVSLLKGSSDSVSPERCLKNITPKPLIEQIALEVDNINWLLEILLDWQMAEEFVNIWADQKELIRMHENTSPMVRYELSRVSAYLFIAMGTRKLNCRSESRSSLLQAWFGPMLLDFSWLQRCKKGLDMKLLEEAMGQVLLTLPMKQQHLLFMDWCRFFSKRGTECPNLSKSFQIWWRRSFLRGSETYSIESR 557
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3870628 3877261 + CmoCh07G008280.1 Cmo07g00828 386136

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g00828 557 MobiDBLite consensus disorder prediction 1 15 - -
Cmo07g00828 557 MobiDBLite consensus disorder prediction 1 71 - -
Cmo07g00828 557 PANTHER OS04G0278000 PROTEIN 15 557 - -
Cmo07g00828 557 MobiDBLite consensus disorder prediction 32 68 - -
Cmo07g00828 557 PANTHER OSJNBA0011J08.25 PROTEIN-RELATED 15 557 IPR038920 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g00828 - - - csv:101203669 992.645
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo03g01081 Cmo07g00828 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g00828 Cmo-Chr7:3870628 Cmo15g01309 Cmo-Chr15:8995923 3.10E-53 dispersed
Cmo03g01081 Cmo-Chr3:8088858 Cmo07g00828 Cmo-Chr7:3870628 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1297 Blo04g00957 Blo16g00538 . . Bpe15g00410 . . . . . Cma03g01096 Cma07g00804 Car03g00987 Car07g00790 Sed14g0231 Cpe19g00526 . Bhi03g01346 Tan03g1304 Cmetu08g2020 . Hepe04g1110 . . Cla01g01513 Cam01g1582 Cec04g1225 Cco04g1295 Clacu01g1607 Cmu01g1494 Cre04g1173 . . . . Lsi01g01153 . . Cme08g01087 . . Bda11g01378 Bda14g01048 . . Bma03g01023 Bma06g00499 . Cmo03g01081 Cmo07g00828 . . . . . . . . . . . . . . . . . . . . . Csa06g02777 Chy02g01058 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004566 3 1 2 3 1 2 2 2 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo07g00828 Cmo_Chr07 FPKM 1.675788 1.885372 5.895447 6.536121 18.97356 17.55159 18.189436 4.342354 4.601051 5.025084