Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g00841 ATGGATTCCGCCGCAACCACCGCAATTCTGACCAACATGCTTCACAACGCCGCCGCCGCCGCCACCACCACCACCAATCTCCCAACGGAATTCCTCTGGCCACACGCCGACTTAGCCGCAAATGCCGACGACCCAGAAGAGCTTCAAGAGCCATTAATCGATTTATCCGGTTTCCGGCGAGGGGACGCGGCGGCGACAGTGGAAGCCGCCGCTCTCATCCGGCAAGCGTGTAGGAACCATGGGTTCTTCCAAGTGACGAACCATGGCATGGACCCAGATCTAATAAACGCCGCATACGAGCATGTGGAGACCATTTTCAATATGCCTTTAGTCAAGAAAATTAGTGTCCGAAAGAAGCCTGGAAGGGTGTCTGGATATTCAGGGGCCCATGCAGAGCGATTCTCCTCTAAATTGCCATGGAAAGAGACGTTTTCTTTTGAGTATTGTAGCGATGATTCTGAATGGCCTAATGTTCTTCATTACTTCAAGACCTTATTGGGGCGCGAGTTCGAGAAAACAGGATGGGTGTACCAGAGATACTGCGAGGAGATGAAAAGAATTGGGCTAATGATAATGGAGCTTTTGGCTATAAGTTTGGGAGTTGAAAGACGGCATTATAGGGAGTTTTTTGAAGATGGGAGGTCAATAATGAGGTGTAATTATTACCCACCGTGTGAGAATGCAGGGCTGACGCTAGGGACTGGGCCGCACTGTGACCCGACGTCTCTAACAATTCTGCACCAAGACCAAGTTGGTGGCCTTGAGGTTTTTGCTAATAATAGATGGCTTTCTGTCAAGCCACGACCGGATGCTTTGGTTATTAATATTGGTGACACCTTCATGGCGCTATCAAACGGGGCGTACAAGAGCTGCCTGCATAGGGCAGTGGTGAACAGGAAGAGAGAAAGGAGGTCACTGGCGTTCTTCGTGTGTCCAAAATATGATAAAGTGGTGAGACCCCCACAAGATTTGGTGGGCAGAGAAGGGCCAAGAAAGTACCCTGATTTTACATGGTCAGATCTTTTGGACTTTACACAAAACCATTATAGAGCTGATGTTGCTACACTCCAAAGCTTTGTTCATTGGCTTCGACCCTCCCATTCCCCTTCCTTTTAA 1116 49.01 MDSAATTAILTNMLHNAAAAATTTTNLPTEFLWPHADLAANADDPEELQEPLIDLSGFRRGDAAATVEAAALIRQACRNHGFFQVTNHGMDPDLINAAYEHVETIFNMPLVKKISVRKKPGRVSGYSGAHAERFSSKLPWKETFSFEYCSDDSEWPNVLHYFKTLLGREFEKTGWVYQRYCEEMKRIGLMIMELLAISLGVERRHYREFFEDGRSIMRCNYYPPCENAGLTLGTGPHCDPTSLTILHQDQVGGLEVFANNRWLSVKPRPDALVINIGDTFMALSNGAYKSCLHRAVVNRKRERRSLAFFVCPKYDKVVRPPQDLVGREGPRKYPDFTWSDLLDFTQNHYRADVATLQSFVHWLRPSHSPSF 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3953016 3955268 - CmoCh07G008410.1 Cmo07g00841 386149

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g00841 371 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 20 366 - -
Cmo07g00841 371 Pfam 2OG-Fe(II) oxygenase superfamily 215 312 IPR044861 -
Cmo07g00841 371 PRINTS Isopenicillin N synthase signature 73 90 - -
Cmo07g00841 371 PRINTS Isopenicillin N synthase signature 237 258 - -
Cmo07g00841 371 PRINTS Isopenicillin N synthase signature 300 318 - -
Cmo07g00841 371 SUPERFAMILY Clavaminate synthase-like 20 351 - -
Cmo07g00841 371 PANTHER GIBBERELLIN 20 OXIDASE 1-B-LIKE 20 366 - -
Cmo07g00841 371 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 213 312 IPR005123 -
Cmo07g00841 371 Pfam non-haem dioxygenase in morphine synthesis N-terminal 51 152 IPR026992 -
Cmo07g00841 371 Gene3D - 16 349 IPR027443 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g00841 K05282 GA20ox; gibberellin-44 dioxygenase [EC:1.14.11.12] - csv:101214165 577.785
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo03g01099 Cmo07g00841 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g00841 Cmo-Chr7:3953016 Cmo15g01459 Cmo-Chr15:9889633 1.37E-135 dispersed
Cmo15g00653 Cmo-Chr15:3158793 Cmo07g00841 Cmo-Chr7:3953016 4.45E-143 transposed
Cmo03g01099 Cmo-Chr3:8896065 Cmo07g00841 Cmo-Chr7:3953016 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1330 . . . . . . . . . . Cma03g01109 Cma07g00811 Car03g01002 Car07g00798 . Cpe19g00512 Cpe10g00323 . . . . . . . Cla01g01490 Cam01g1558 Cec04g1205 Cco04g1272 Clacu01g1584 Cmu01g1473 Cre04g1154 . . Cone6ag1263 . Lsi01g01170 . . Cme08g01138 . . . . . . . . . Cmo03g01099 Cmo07g00841 . . . . . . . . . . . . . . . . . . . . . Csa06g02740 Chy02g01095 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007963 0 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 2 1 1 3 1 1 1 1 1 1 1 3 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo07g00841 Cmo_Chr07 FPKM 6.563544 6.818737 9.682362 10.360178 11.723959 10.811203 11.860204 11.2102 10.365135 10.525396