Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g00849 ATGAACAACGGCACCGACGACGGCGGCGGATTTCTGTCCTCAGGCAACATCGGCGGATACGGATATGGAATCGGCGTCTCGTTAGGGCTTTTGATTCTCATCACTACAATCCTCTTGGCTTCCTATTACTGCACCAGAGTCGTCCAATCGCCGACCTCCGGGATTCAGAACAACGTCAATCTCTCGCCGCCGCCGCCGCCGCGGCTGGCGGAGGAGGATGCCGTAGTTGTCGTCGATATCGGAATCGATCAGGAGACGATTAGGAATTTTCCGAAATTGCTGTATTCAGAGGCGAAGATTCAGAACAACGATTCCTCTGCTTCTTGTTGCTCTATCTGTTTGGCCGATTACAAAAACTCCGATGTTCTTCGGATTTTGCCCGATTGCGGCCATTTGTTCCACCTCAAGTGTGTCGATCCGTGGCTGAGGCTTCACCCAACCTGTCCGGTTTGCCGGACCTCGCCCATTCCGACGCCGTTGTCGACTCCTCTGGCGGAGCAAAATCGATCCATCTCCTCGATCGCGAATCGCCATAGTTAG 540 53.89 MNNGTDDGGGFLSSGNIGGYGYGIGVSLGLLILITTILLASYYCTRVVQSPTSGIQNNVNLSPPPPPRLAEEDAVVVVDIGIDQETIRNFPKLLYSEAKIQNNDSSASCCSICLADYKNSDVLRILPDCGHLFHLKCVDPWLRLHPTCPVCRTSPIPTPLSTPLAEQNRSISSIANRHS 179
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4015530 4016142 - CmoCh07G008490.1 Cmo07g00849 386157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g00849 179 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 156 IPR013083 -
Cmo07g00849 179 ProSiteProfiles Zinc finger RING-type profile. 110 152 IPR001841 -
Cmo07g00849 179 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 168 IPR045899 -
Cmo07g00849 179 PANTHER RING-H2 FINGER PROTEIN ATL71-RELATED 1 168 - -
Cmo07g00849 179 SUPERFAMILY RING/U-box 86 157 - -
Cmo07g00849 179 SMART ring_2 110 151 IPR001841 -
Cmo07g00849 179 Pfam Ring finger domain 110 152 IPR001841 -
Cmo07g00849 179 CDD RING-H2_PA-TM-RING 109 152 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g00849 Cmo-Chr7:4015530 Cmo14g02129 Cmo-Chr14:15390320 1.73E-27 dispersed
Cmo14g00369 Cmo-Chr14:1709505 Cmo07g00849 Cmo-Chr7:4015530 1.82E-43 wgd
Cmo03g01106 Cmo-Chr3:8935077 Cmo07g00849 Cmo-Chr7:4015530 5.51E-75 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g00849 - - cpep:111782200 280.796