Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo07g00849 | ATGAACAACGGCACCGACGACGGCGGCGGATTTCTGTCCTCAGGCAACATCGGCGGATACGGATATGGAATCGGCGTCTCGTTAGGGCTTTTGATTCTCATCACTACAATCCTCTTGGCTTCCTATTACTGCACCAGAGTCGTCCAATCGCCGACCTCCGGGATTCAGAACAACGTCAATCTCTCGCCGCCGCCGCCGCCGCGGCTGGCGGAGGAGGATGCCGTAGTTGTCGTCGATATCGGAATCGATCAGGAGACGATTAGGAATTTTCCGAAATTGCTGTATTCAGAGGCGAAGATTCAGAACAACGATTCCTCTGCTTCTTGTTGCTCTATCTGTTTGGCCGATTACAAAAACTCCGATGTTCTTCGGATTTTGCCCGATTGCGGCCATTTGTTCCACCTCAAGTGTGTCGATCCGTGGCTGAGGCTTCACCCAACCTGTCCGGTTTGCCGGACCTCGCCCATTCCGACGCCGTTGTCGACTCCTCTGGCGGAGCAAAATCGATCCATCTCCTCGATCGCGAATCGCCATAGTTAG | 540 | 53.89 | MNNGTDDGGGFLSSGNIGGYGYGIGVSLGLLILITTILLASYYCTRVVQSPTSGIQNNVNLSPPPPPRLAEEDAVVVVDIGIDQETIRNFPKLLYSEAKIQNNDSSASCCSICLADYKNSDVLRILPDCGHLFHLKCVDPWLRLHPTCPVCRTSPIPTPLSTPLAEQNRSISSIANRHS | 179 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 4015530 | 4016142 | - | CmoCh07G008490.1 | Cmo07g00849 | 386157 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo07g00849 | 179 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 71 | 156 | IPR013083 | - | |
Cmo07g00849 | 179 | ProSiteProfiles | Zinc finger RING-type profile. | 110 | 152 | IPR001841 | - | |
Cmo07g00849 | 179 | PANTHER | TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED | 1 | 168 | IPR045899 | - | |
Cmo07g00849 | 179 | PANTHER | RING-H2 FINGER PROTEIN ATL71-RELATED | 1 | 168 | - | - | |
Cmo07g00849 | 179 | SUPERFAMILY | RING/U-box | 86 | 157 | - | - | |
Cmo07g00849 | 179 | SMART | ring_2 | 110 | 151 | IPR001841 | - | |
Cmo07g00849 | 179 | Pfam | Ring finger domain | 110 | 152 | IPR001841 | - | |
Cmo07g00849 | 179 | CDD | RING-H2_PA-TM-RING | 109 | 152 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo07g00849 | Cmo-Chr7:4015530 | Cmo14g02129 | Cmo-Chr14:15390320 | 1.73E-27 | dispersed | |
Cmo14g00369 | Cmo-Chr14:1709505 | Cmo07g00849 | Cmo-Chr7:4015530 | 1.82E-43 | wgd | |
Cmo03g01106 | Cmo-Chr3:8935077 | Cmo07g00849 | Cmo-Chr7:4015530 | 5.51E-75 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo07g00849 | - | - | cpep:111782200 | 280.796 |