Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo07g00850 | ATGAATGATTTGTTTTCCTCCGATTCCTTCCGTCGGGATCCGCACCACCACTCCGTCGAGATGGCCCCCGATGTTCCGTCGTCAACAACTATCAATCTAAACAATTTCTTTGAAGACGTCGAGTCCGTGAAAGCAGAATTGGCGGAGCTCGAACGCCTCCATCGAAGCCTCCAGAATTCTCATGAACATAGTAAGACTTTGCATAACTCGAAGGCGATTAAGGATCTTCGATCTCGAATGGAATCAGATTTGACTTTGGCTTTGAAGAAAGCTAGGTTTATCAAGCTTCGATTGGAGGAACTCGACCGGTCCAATACCGAGAATCGGAATCTTCCTGGTTGTGGGTATGGCTCCTCTGCTGACCGGTCTAGAACTTCCGTCGTCAATGGATTGAGGAAAAATCTTTGTGATTCGATGGAGAATTTCAACCGGTTGAGAGAGGAGATCTCGTCGACGTATAAGGAGACGATTGAACGAAGATATTTTACGATTACAGGGGAGAATCCCGATGAGAAGACGATCGATCTCTTGATCTCTACAGGTGAAAGCGAGACATTCCTACAAAAAGCCATACAGAAGCAAGGAAAAGGCAAAGTTCTAGAAACAATCCAAGAGATTCAAGAAAGGCACGACGCAGTGAAAGACATTGAGAAGAACCTAAAAGAGCTACACCAAGTGTTCATGGACATGGCGGTACTAGTCCAAACGCAAGGGCAGCATTTGGACGACATTGAGAGCCAAGTGACTCGAGCCAACTCCGCCATCAAGCGCGGTGCCACTGAGCTACAAACCGCAAGACACTACCAAAAAAACACCAGAAAATGGATGTGCATAGGCGTTGCTGCTTTTATATTTATCCTCTTCATCATTATTCTTTCTGTCGTCCTTGCCAACAAGAAGTAA | 903 | 45.74 | MNDLFSSDSFRRDPHHHSVEMAPDVPSSTTINLNNFFEDVESVKAELAELERLHRSLQNSHEHSKTLHNSKAIKDLRSRMESDLTLALKKARFIKLRLEELDRSNTENRNLPGCGYGSSADRSRTSVVNGLRKNLCDSMENFNRLREEISSTYKETIERRYFTITGENPDEKTIDLLISTGESETFLQKAIQKQGKGKVLETIQEIQERHDAVKDIEKNLKELHQVFMDMAVLVQTQGQHLDDIESQVTRANSAIKRGATELQTARHYQKNTRKWMCIGVAAFIFILFIIILSVVLANKK | 300 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 4017505 | 4018612 | - | CmoCh07G008500.1 | Cmo07g00850 | 386158 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo07g00850 | 300 | PANTHER | SYNTAXIN | 13 | 293 | IPR045242 | - | |
Cmo07g00850 | 300 | SUPERFAMILY | t-snare proteins | 32 | 258 | IPR010989 | GO:0016020|GO:0016192 | |
Cmo07g00850 | 300 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
Cmo07g00850 | 300 | Gene3D | - | 31 | 163 | - | - | |
Cmo07g00850 | 300 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Cmo07g00850 | 300 | CDD | SNARE_syntaxin1-like | 202 | 264 | - | - | |
Cmo07g00850 | 300 | Gene3D | - | 192 | 297 | - | - | |
Cmo07g00850 | 300 | Coils | Coil | 203 | 223 | - | - | |
Cmo07g00850 | 300 | CDD | SynN | 36 | 190 | IPR006011 | GO:0016020 | |
Cmo07g00850 | 300 | PANTHER | SYNTAXIN-121 | 13 | 293 | - | - | |
Cmo07g00850 | 300 | Pfam | Syntaxin | 35 | 238 | IPR006011 | GO:0016020 | |
Cmo07g00850 | 300 | ProSitePatterns | Syntaxin / epimorphin family signature. | 209 | 248 | IPR006012 | GO:0005484|GO:0006886|GO:0016020 | |
Cmo07g00850 | 300 | SMART | tSNARE_6 | 198 | 265 | IPR000727 | - | |
Cmo07g00850 | 300 | SMART | SynN_4 | 28 | 154 | IPR006011 | GO:0016020 | |
Cmo07g00850 | 300 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 203 | 265 | IPR000727 | - | |
Cmo07g00850 | 300 | Pfam | SNARE domain | 241 | 291 | IPR000727 | - | |
Cmo07g00850 | 300 | Coils | Coil | 33 | 60 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo07g00850 | Cmo-Chr7:4017505 | Cmo13g00695 | Cmo-Chr13:7115501 | 7.68E-114 | dispersed | |
Cmo14g00363 | Cmo-Chr14:1665244 | Cmo07g00850 | Cmo-Chr7:4017505 | 1.23E-133 | wgd | |
Cmo06g00530 | Cmo-Chr6:2569877 | Cmo07g00850 | Cmo-Chr7:4017505 | 4.31E-144 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo07g00850 | K08486 | - | csv:101213443 | 488.804 |