Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g00850 ATGAATGATTTGTTTTCCTCCGATTCCTTCCGTCGGGATCCGCACCACCACTCCGTCGAGATGGCCCCCGATGTTCCGTCGTCAACAACTATCAATCTAAACAATTTCTTTGAAGACGTCGAGTCCGTGAAAGCAGAATTGGCGGAGCTCGAACGCCTCCATCGAAGCCTCCAGAATTCTCATGAACATAGTAAGACTTTGCATAACTCGAAGGCGATTAAGGATCTTCGATCTCGAATGGAATCAGATTTGACTTTGGCTTTGAAGAAAGCTAGGTTTATCAAGCTTCGATTGGAGGAACTCGACCGGTCCAATACCGAGAATCGGAATCTTCCTGGTTGTGGGTATGGCTCCTCTGCTGACCGGTCTAGAACTTCCGTCGTCAATGGATTGAGGAAAAATCTTTGTGATTCGATGGAGAATTTCAACCGGTTGAGAGAGGAGATCTCGTCGACGTATAAGGAGACGATTGAACGAAGATATTTTACGATTACAGGGGAGAATCCCGATGAGAAGACGATCGATCTCTTGATCTCTACAGGTGAAAGCGAGACATTCCTACAAAAAGCCATACAGAAGCAAGGAAAAGGCAAAGTTCTAGAAACAATCCAAGAGATTCAAGAAAGGCACGACGCAGTGAAAGACATTGAGAAGAACCTAAAAGAGCTACACCAAGTGTTCATGGACATGGCGGTACTAGTCCAAACGCAAGGGCAGCATTTGGACGACATTGAGAGCCAAGTGACTCGAGCCAACTCCGCCATCAAGCGCGGTGCCACTGAGCTACAAACCGCAAGACACTACCAAAAAAACACCAGAAAATGGATGTGCATAGGCGTTGCTGCTTTTATATTTATCCTCTTCATCATTATTCTTTCTGTCGTCCTTGCCAACAAGAAGTAA 903 45.74 MNDLFSSDSFRRDPHHHSVEMAPDVPSSTTINLNNFFEDVESVKAELAELERLHRSLQNSHEHSKTLHNSKAIKDLRSRMESDLTLALKKARFIKLRLEELDRSNTENRNLPGCGYGSSADRSRTSVVNGLRKNLCDSMENFNRLREEISSTYKETIERRYFTITGENPDEKTIDLLISTGESETFLQKAIQKQGKGKVLETIQEIQERHDAVKDIEKNLKELHQVFMDMAVLVQTQGQHLDDIESQVTRANSAIKRGATELQTARHYQKNTRKWMCIGVAAFIFILFIIILSVVLANKK 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4017505 4018612 - CmoCh07G008500.1 Cmo07g00850 386158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g00850 300 PANTHER SYNTAXIN 13 293 IPR045242 -
Cmo07g00850 300 SUPERFAMILY t-snare proteins 32 258 IPR010989 GO:0016020|GO:0016192
Cmo07g00850 300 MobiDBLite consensus disorder prediction 1 25 - -
Cmo07g00850 300 Gene3D - 31 163 - -
Cmo07g00850 300 MobiDBLite consensus disorder prediction 1 20 - -
Cmo07g00850 300 CDD SNARE_syntaxin1-like 202 264 - -
Cmo07g00850 300 Gene3D - 192 297 - -
Cmo07g00850 300 Coils Coil 203 223 - -
Cmo07g00850 300 CDD SynN 36 190 IPR006011 GO:0016020
Cmo07g00850 300 PANTHER SYNTAXIN-121 13 293 - -
Cmo07g00850 300 Pfam Syntaxin 35 238 IPR006011 GO:0016020
Cmo07g00850 300 ProSitePatterns Syntaxin / epimorphin family signature. 209 248 IPR006012 GO:0005484|GO:0006886|GO:0016020
Cmo07g00850 300 SMART tSNARE_6 198 265 IPR000727 -
Cmo07g00850 300 SMART SynN_4 28 154 IPR006011 GO:0016020
Cmo07g00850 300 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 203 265 IPR000727 -
Cmo07g00850 300 Pfam SNARE domain 241 291 IPR000727 -
Cmo07g00850 300 Coils Coil 33 60 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g00850 Cmo-Chr7:4017505 Cmo13g00695 Cmo-Chr13:7115501 7.68E-114 dispersed
Cmo14g00363 Cmo-Chr14:1665244 Cmo07g00850 Cmo-Chr7:4017505 1.23E-133 wgd
Cmo06g00530 Cmo-Chr6:2569877 Cmo07g00850 Cmo-Chr7:4017505 4.31E-144 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g00850 K08486 - csv:101213443 488.804