Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g00858 ATGAACGCCATGCAAGACACTGCTCTCCACCTCCTCTCCAATGGCGGATTCCTCCACCACTCTTCTCCTTCCTCTCTTTTCCCCTCTCTTTCCCGCTCCCGAACCCTCCAATTCCCCACAATCAATGCCAAAATCGCCTTCATTTTGCCCTCTAAACTTCCCTCTCGCGCCCCTGACATTCCCCCTCTCTCGCCGCCGCTCCCTCCGCCGCCGTCTCACAGCGGCTCTCGCTCCGAGTTTCAGGAGAAAATGCTCTTCCTCGACTCCATCGGTATCGATTTCCTTTCTGTCATTAAAGACCATCCTCCCGTCGCTACTGCCTCTCTTGCCGACATCAGATCCGCAGTCGATTTCATGACCTCGATGAATTTCACCGCCGTTGAGTTCCGCCGAATCGTTGGTATGTGCCCTGAGATTCTCACCTCTCGCGTTTCAGACATCGTTCCGGTGTTTACGTTCCTCCTTCGTGAGGCTAGAGTCGACGGTTCTGACATCAAACGTGTTATCAATCGACGCCCTAGGTTGCTTGCGTGTAGCGTGAAGAATCGGCTTCGTCCGACTATGTACTTCCTGCAAAGCATCGGTATATCTGAGGTACATAAACACACTTCTTTACTTTCTTGTAGCGTGGAAGAGAAATTGATTCCGAGAATCGAGTTCTTCGAGAACCTAGGGTTTTCTCGCCGGGACGCTGTGATAATGTTCCGGCGATTCCCGCAGCTGTTCTGCTGCAGCATCAAGGAGAATTTGGAGCCGAAACTGAATTACTTCGTGGTGGAAATGGGAAGAGAATTGAAGGAATTGAAGGAGTTCCCTCATTACTTCTCGTTTAGCTTAGAGAATAGGATTAAGCCGAGACATCAAATCTGTGTGGAGAAGGGCGTTTGTTTTCCATTGCCAGTGTTGCTGAAAACCAGTGAGATGAAATTCCGGGAAAAATTGGAGCTTCTCAACTTTCATGCCATTTCCATCTTCCTTCTCCAAATCCACTGTGTTTCATTTCTCTTGTCCCTTGGATTCTCCATGCGTGGCGGCGGTTCTCGAGCTCCGAACAGGTCGGAGCCACTGCCGCACTCCCAACCTGCTCAGATCCTCCCGCCTCTCAAGCGGCAGCTTGCTTTCGAGTTGTCTAGGCCGTCGTTCGTTCCTTCGGGTGACTATTACCACTTTGGCGGTGGTTCTTCCAATGCTCTTGATCAACAACCTGATGCTATCGTCGTTAAACCTCTCAAACCAAAACAGAAGGGGGCCATGTATAACCATGTGATTGAATCTAGTGACTGCATTCATGATCAGAGTTCTTCAAAAGATGCTCTAAGTTTTGTACAGACACCTGTATCTGCAAAAGGCGGAAGGGTGTACAATAAGGCAAAGACTCCAAGAAGAGCTACGTCTGGGCCTGGAACACCTATCTCAGACACTAGCACTTATTCTCCTCTTACCCCAGCTGGAAACTGTCGACATGACAGTTCTTTAGGTCTTCTGACAAAAAAATTCATCAATTTAATTAAGCAAGCAAGGGATGGCATTCTTGACTTGAACAAAGCTGCAGAAACTTTGAAGGTGCAGAAAAGGAGAATATATGACATTACAAATGTTTTGGAAGGCATAGGTCTCATAGAAAAGAAGCTGAAAAACATAATATGTTGGAAGGGATTCAATGCCCAAAGTCCAGGAAATGTGGATAGTGATACTGCTATGTTGCAGGTGGATGTTGAAAAGCTTTCTTTTGAAGAGCGTAGATTAGAAGATAAGATAAGTGCATTGCAGGAAAGACTTAGGAATCTGAGTGAAGATGAAAATATCCAAAAATGGCTCTTTGTGACTGAAGAAGACATTAAAAGCTTGCCTTGCTTTCAGAATGAAACGCTGATAGCAATTAAAGCTCCTCATGGAACCACATTGGAAGTTCCTGATCCCGATGAAGCTGTTGATGATCCACAGAGAAGATATAGAATAGTTCTTAGGAGCACGATGGGTCCTATTGATGTATATCTTGTCAGTCAATTTGAGGAGAAAATTGAGGAGATGAATGTGGTCCAGACACCTAGTAGCTTCCTACATGCTTCCAGTTCAGGATCAAACGAACATCTAGCAACAGAAGCAATTATTGGTGAGAGCAGTAGAAACGAAATCGAACCCCAAGCTCAACTGTCCCAGTACAGCAGCATCTGTGATGTGCATGGTTCAAACGAGTTTCCTGGTGGAATGATGAAGATTATGCCTTCAGAAATTGATAATGATGCAGATTACTGGCTGTTATCAGATGCTGAAGTTAGCATTACAGATATGTGGAGAACAGATACTATAGCAGCAGATATTGTATGGGACCAGTCAGATATGGTTCCTCATGACTTCATAATATCTGATGTTAGTGCCCAAAGGCCAAGACCAGTAAGCCCACATTCAGAGAGGGGCGGAATGCCATCTGATGTTAACTTAAGACAAAGGTGA 2454 45.84 MNAMQDTALHLLSNGGFLHHSSPSSLFPSLSRSRTLQFPTINAKIAFILPSKLPSRAPDIPPLSPPLPPPPSHSGSRSEFQEKMLFLDSIGIDFLSVIKDHPPVATASLADIRSAVDFMTSMNFTAVEFRRIVGMCPEILTSRVSDIVPVFTFLLREARVDGSDIKRVINRRPRLLACSVKNRLRPTMYFLQSIGISEVHKHTSLLSCSVEEKLIPRIEFFENLGFSRRDAVIMFRRFPQLFCCSIKENLEPKLNYFVVEMGRELKELKEFPHYFSFSLENRIKPRHQICVEKGVCFPLPVLLKTSEMKFREKLELLNFHAISIFLLQIHCVSFLLSLGFSMRGGGSRAPNRSEPLPHSQPAQILPPLKRQLAFELSRPSFVPSGDYYHFGGGSSNALDQQPDAIVVKPLKPKQKGAMYNHVIESSDCIHDQSSSKDALSFVQTPVSAKGGRVYNKAKTPRRATSGPGTPISDTSTYSPLTPAGNCRHDSSLGLLTKKFINLIKQARDGILDLNKAAETLKVQKRRIYDITNVLEGIGLIEKKLKNIICWKGFNAQSPGNVDSDTAMLQVDVEKLSFEERRLEDKISALQERLRNLSEDENIQKWLFVTEEDIKSLPCFQNETLIAIKAPHGTTLEVPDPDEAVDDPQRRYRIVLRSTMGPIDVYLVSQFEEKIEEMNVVQTPSSFLHASSSGSNEHLATEAIIGESSRNEIEPQAQLSQYSSICDVHGSNEFPGGMMKIMPSEIDNDADYWLLSDAEVSITDMWRTDTIAADIVWDQSDMVPHDFIISDVSAQRPRPVSPHSERGGMPSDVNLRQR 817
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4049258 4058625 + CmoCh07G008580.1 Cmo07g00858 386166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g00858 817 PANTHER TRANSCRIPTION FACTOR E2FB 365 798 - -
Cmo07g00858 817 SUPERFAMILY E2F-DP heterodimerization region 566 669 IPR037241 -
Cmo07g00858 817 MobiDBLite consensus disorder prediction 58 73 - -
Cmo07g00858 817 MobiDBLite consensus disorder prediction 58 78 - -
Cmo07g00858 817 MobiDBLite consensus disorder prediction 452 482 - -
Cmo07g00858 817 Pfam E2F transcription factor CC-MB domain 568 668 IPR032198 GO:0046983
Cmo07g00858 817 SMART mt_12 130 161 IPR003690 GO:0003690|GO:0006355
Cmo07g00858 817 SMART mt_12 232 264 IPR003690 GO:0003690|GO:0006355
Cmo07g00858 817 SMART mt_12 265 296 IPR003690 GO:0003690|GO:0006355
Cmo07g00858 817 SMART mt_12 166 197 IPR003690 GO:0003690|GO:0006355
Cmo07g00858 817 SMART mt_12 95 125 IPR003690 GO:0003690|GO:0006355
Cmo07g00858 817 SMART mt_12 198 227 IPR003690 GO:0003690|GO:0006355
Cmo07g00858 817 Coils Coil 572 599 - -
Cmo07g00858 817 Gene3D Transcription termination factor 3, mitochondrial 149 326 IPR038538 -
Cmo07g00858 817 SMART E2F_TDP_2 487 552 IPR003316 GO:0005667|GO:0006355
Cmo07g00858 817 CDD E2F_DD 568 669 IPR032198 GO:0046983
Cmo07g00858 817 SUPERFAMILY Winged helix DNA-binding domain 487 550 IPR036390 -
Cmo07g00858 817 Pfam E2F/DP family winged-helix DNA-binding domain 489 552 IPR003316 GO:0005667|GO:0006355
Cmo07g00858 817 Gene3D - 559 669 - -
Cmo07g00858 817 MobiDBLite consensus disorder prediction 465 482 - -
Cmo07g00858 817 MobiDBLite consensus disorder prediction 792 817 - -
Cmo07g00858 817 Pfam mTERF 155 310 IPR003690 GO:0003690|GO:0006355
Cmo07g00858 817 Gene3D - 481 555 IPR036388 -
Cmo07g00858 817 PANTHER TRANSCRIPTION FACTOR E2F 365 798 IPR015633 GO:0000978|GO:0006357
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo03g01117 Cmo07g00858 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00304 Cmo-Chr5:1342930 Cmo07g00858 Cmo-Chr7:4049258 2.29E-65 dispersed
Cmo07g00858 Cmo-Chr7:4049258 Cmo20g00168 Cmo-Chr20:850643 9.32E-77 dispersed
Cmo18g00114 Cmo-Chr18:783508 Cmo07g00858 Cmo-Chr7:4049258 3.27E-11 dispersed
Cmo19g00843 Cmo-Chr19:8215102 Cmo07g00858 Cmo-Chr7:4049258 4.94E-22 dispersed
Cmo09g00996 Cmo-Chr9:5292979 Cmo07g00858 Cmo-Chr7:4049258 1.50E-22 transposed
Cmo02g01350 Cmo-Chr2:8036553 Cmo07g00858 Cmo-Chr7:4049258 2.15E-140 wgd
Cmo03g01117 Cmo-Chr3:8970606 Cmo07g00858 Cmo-Chr7:4049258 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10154 PF02536 mTERF 4.50E-33 No_clan Cmo TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g00858 K06620 - csv:101212480 961.059