Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo07g00858 | ATGAACGCCATGCAAGACACTGCTCTCCACCTCCTCTCCAATGGCGGATTCCTCCACCACTCTTCTCCTTCCTCTCTTTTCCCCTCTCTTTCCCGCTCCCGAACCCTCCAATTCCCCACAATCAATGCCAAAATCGCCTTCATTTTGCCCTCTAAACTTCCCTCTCGCGCCCCTGACATTCCCCCTCTCTCGCCGCCGCTCCCTCCGCCGCCGTCTCACAGCGGCTCTCGCTCCGAGTTTCAGGAGAAAATGCTCTTCCTCGACTCCATCGGTATCGATTTCCTTTCTGTCATTAAAGACCATCCTCCCGTCGCTACTGCCTCTCTTGCCGACATCAGATCCGCAGTCGATTTCATGACCTCGATGAATTTCACCGCCGTTGAGTTCCGCCGAATCGTTGGTATGTGCCCTGAGATTCTCACCTCTCGCGTTTCAGACATCGTTCCGGTGTTTACGTTCCTCCTTCGTGAGGCTAGAGTCGACGGTTCTGACATCAAACGTGTTATCAATCGACGCCCTAGGTTGCTTGCGTGTAGCGTGAAGAATCGGCTTCGTCCGACTATGTACTTCCTGCAAAGCATCGGTATATCTGAGGTACATAAACACACTTCTTTACTTTCTTGTAGCGTGGAAGAGAAATTGATTCCGAGAATCGAGTTCTTCGAGAACCTAGGGTTTTCTCGCCGGGACGCTGTGATAATGTTCCGGCGATTCCCGCAGCTGTTCTGCTGCAGCATCAAGGAGAATTTGGAGCCGAAACTGAATTACTTCGTGGTGGAAATGGGAAGAGAATTGAAGGAATTGAAGGAGTTCCCTCATTACTTCTCGTTTAGCTTAGAGAATAGGATTAAGCCGAGACATCAAATCTGTGTGGAGAAGGGCGTTTGTTTTCCATTGCCAGTGTTGCTGAAAACCAGTGAGATGAAATTCCGGGAAAAATTGGAGCTTCTCAACTTTCATGCCATTTCCATCTTCCTTCTCCAAATCCACTGTGTTTCATTTCTCTTGTCCCTTGGATTCTCCATGCGTGGCGGCGGTTCTCGAGCTCCGAACAGGTCGGAGCCACTGCCGCACTCCCAACCTGCTCAGATCCTCCCGCCTCTCAAGCGGCAGCTTGCTTTCGAGTTGTCTAGGCCGTCGTTCGTTCCTTCGGGTGACTATTACCACTTTGGCGGTGGTTCTTCCAATGCTCTTGATCAACAACCTGATGCTATCGTCGTTAAACCTCTCAAACCAAAACAGAAGGGGGCCATGTATAACCATGTGATTGAATCTAGTGACTGCATTCATGATCAGAGTTCTTCAAAAGATGCTCTAAGTTTTGTACAGACACCTGTATCTGCAAAAGGCGGAAGGGTGTACAATAAGGCAAAGACTCCAAGAAGAGCTACGTCTGGGCCTGGAACACCTATCTCAGACACTAGCACTTATTCTCCTCTTACCCCAGCTGGAAACTGTCGACATGACAGTTCTTTAGGTCTTCTGACAAAAAAATTCATCAATTTAATTAAGCAAGCAAGGGATGGCATTCTTGACTTGAACAAAGCTGCAGAAACTTTGAAGGTGCAGAAAAGGAGAATATATGACATTACAAATGTTTTGGAAGGCATAGGTCTCATAGAAAAGAAGCTGAAAAACATAATATGTTGGAAGGGATTCAATGCCCAAAGTCCAGGAAATGTGGATAGTGATACTGCTATGTTGCAGGTGGATGTTGAAAAGCTTTCTTTTGAAGAGCGTAGATTAGAAGATAAGATAAGTGCATTGCAGGAAAGACTTAGGAATCTGAGTGAAGATGAAAATATCCAAAAATGGCTCTTTGTGACTGAAGAAGACATTAAAAGCTTGCCTTGCTTTCAGAATGAAACGCTGATAGCAATTAAAGCTCCTCATGGAACCACATTGGAAGTTCCTGATCCCGATGAAGCTGTTGATGATCCACAGAGAAGATATAGAATAGTTCTTAGGAGCACGATGGGTCCTATTGATGTATATCTTGTCAGTCAATTTGAGGAGAAAATTGAGGAGATGAATGTGGTCCAGACACCTAGTAGCTTCCTACATGCTTCCAGTTCAGGATCAAACGAACATCTAGCAACAGAAGCAATTATTGGTGAGAGCAGTAGAAACGAAATCGAACCCCAAGCTCAACTGTCCCAGTACAGCAGCATCTGTGATGTGCATGGTTCAAACGAGTTTCCTGGTGGAATGATGAAGATTATGCCTTCAGAAATTGATAATGATGCAGATTACTGGCTGTTATCAGATGCTGAAGTTAGCATTACAGATATGTGGAGAACAGATACTATAGCAGCAGATATTGTATGGGACCAGTCAGATATGGTTCCTCATGACTTCATAATATCTGATGTTAGTGCCCAAAGGCCAAGACCAGTAAGCCCACATTCAGAGAGGGGCGGAATGCCATCTGATGTTAACTTAAGACAAAGGTGA | 2454 | 45.84 | MNAMQDTALHLLSNGGFLHHSSPSSLFPSLSRSRTLQFPTINAKIAFILPSKLPSRAPDIPPLSPPLPPPPSHSGSRSEFQEKMLFLDSIGIDFLSVIKDHPPVATASLADIRSAVDFMTSMNFTAVEFRRIVGMCPEILTSRVSDIVPVFTFLLREARVDGSDIKRVINRRPRLLACSVKNRLRPTMYFLQSIGISEVHKHTSLLSCSVEEKLIPRIEFFENLGFSRRDAVIMFRRFPQLFCCSIKENLEPKLNYFVVEMGRELKELKEFPHYFSFSLENRIKPRHQICVEKGVCFPLPVLLKTSEMKFREKLELLNFHAISIFLLQIHCVSFLLSLGFSMRGGGSRAPNRSEPLPHSQPAQILPPLKRQLAFELSRPSFVPSGDYYHFGGGSSNALDQQPDAIVVKPLKPKQKGAMYNHVIESSDCIHDQSSSKDALSFVQTPVSAKGGRVYNKAKTPRRATSGPGTPISDTSTYSPLTPAGNCRHDSSLGLLTKKFINLIKQARDGILDLNKAAETLKVQKRRIYDITNVLEGIGLIEKKLKNIICWKGFNAQSPGNVDSDTAMLQVDVEKLSFEERRLEDKISALQERLRNLSEDENIQKWLFVTEEDIKSLPCFQNETLIAIKAPHGTTLEVPDPDEAVDDPQRRYRIVLRSTMGPIDVYLVSQFEEKIEEMNVVQTPSSFLHASSSGSNEHLATEAIIGESSRNEIEPQAQLSQYSSICDVHGSNEFPGGMMKIMPSEIDNDADYWLLSDAEVSITDMWRTDTIAADIVWDQSDMVPHDFIISDVSAQRPRPVSPHSERGGMPSDVNLRQR | 817 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 4049258 | 4058625 | + | CmoCh07G008580.1 | Cmo07g00858 | 386166 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo07g00858 | 817 | PANTHER | TRANSCRIPTION FACTOR E2FB | 365 | 798 | - | - | |
Cmo07g00858 | 817 | SUPERFAMILY | E2F-DP heterodimerization region | 566 | 669 | IPR037241 | - | |
Cmo07g00858 | 817 | MobiDBLite | consensus disorder prediction | 58 | 73 | - | - | |
Cmo07g00858 | 817 | MobiDBLite | consensus disorder prediction | 58 | 78 | - | - | |
Cmo07g00858 | 817 | MobiDBLite | consensus disorder prediction | 452 | 482 | - | - | |
Cmo07g00858 | 817 | Pfam | E2F transcription factor CC-MB domain | 568 | 668 | IPR032198 | GO:0046983 | |
Cmo07g00858 | 817 | SMART | mt_12 | 130 | 161 | IPR003690 | GO:0003690|GO:0006355 | |
Cmo07g00858 | 817 | SMART | mt_12 | 232 | 264 | IPR003690 | GO:0003690|GO:0006355 | |
Cmo07g00858 | 817 | SMART | mt_12 | 265 | 296 | IPR003690 | GO:0003690|GO:0006355 | |
Cmo07g00858 | 817 | SMART | mt_12 | 166 | 197 | IPR003690 | GO:0003690|GO:0006355 | |
Cmo07g00858 | 817 | SMART | mt_12 | 95 | 125 | IPR003690 | GO:0003690|GO:0006355 | |
Cmo07g00858 | 817 | SMART | mt_12 | 198 | 227 | IPR003690 | GO:0003690|GO:0006355 | |
Cmo07g00858 | 817 | Coils | Coil | 572 | 599 | - | - | |
Cmo07g00858 | 817 | Gene3D | Transcription termination factor 3, mitochondrial | 149 | 326 | IPR038538 | - | |
Cmo07g00858 | 817 | SMART | E2F_TDP_2 | 487 | 552 | IPR003316 | GO:0005667|GO:0006355 | |
Cmo07g00858 | 817 | CDD | E2F_DD | 568 | 669 | IPR032198 | GO:0046983 | |
Cmo07g00858 | 817 | SUPERFAMILY | Winged helix DNA-binding domain | 487 | 550 | IPR036390 | - | |
Cmo07g00858 | 817 | Pfam | E2F/DP family winged-helix DNA-binding domain | 489 | 552 | IPR003316 | GO:0005667|GO:0006355 | |
Cmo07g00858 | 817 | Gene3D | - | 559 | 669 | - | - | |
Cmo07g00858 | 817 | MobiDBLite | consensus disorder prediction | 465 | 482 | - | - | |
Cmo07g00858 | 817 | MobiDBLite | consensus disorder prediction | 792 | 817 | - | - | |
Cmo07g00858 | 817 | Pfam | mTERF | 155 | 310 | IPR003690 | GO:0003690|GO:0006355 | |
Cmo07g00858 | 817 | Gene3D | - | 481 | 555 | IPR036388 | - | |
Cmo07g00858 | 817 | PANTHER | TRANSCRIPTION FACTOR E2F | 365 | 798 | IPR015633 | GO:0000978|GO:0006357 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo03g01117 | Cmo07g00858 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo05g00304 | Cmo-Chr5:1342930 | Cmo07g00858 | Cmo-Chr7:4049258 | 2.29E-65 | dispersed | |
Cmo07g00858 | Cmo-Chr7:4049258 | Cmo20g00168 | Cmo-Chr20:850643 | 9.32E-77 | dispersed | |
Cmo18g00114 | Cmo-Chr18:783508 | Cmo07g00858 | Cmo-Chr7:4049258 | 3.27E-11 | dispersed | |
Cmo19g00843 | Cmo-Chr19:8215102 | Cmo07g00858 | Cmo-Chr7:4049258 | 4.94E-22 | dispersed | |
Cmo09g00996 | Cmo-Chr9:5292979 | Cmo07g00858 | Cmo-Chr7:4049258 | 1.50E-22 | transposed | |
Cmo02g01350 | Cmo-Chr2:8036553 | Cmo07g00858 | Cmo-Chr7:4049258 | 2.15E-140 | wgd | |
Cmo03g01117 | Cmo-Chr3:8970606 | Cmo07g00858 | Cmo-Chr7:4049258 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
10154 | PF02536 | mTERF | 4.50E-33 | No_clan | Cmo | TR |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo07g00858 | K06620 | - | csv:101212480 | 961.059 |