Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g00858 ATGAACGCCATGCAAGACACTGCTCTCCACCTCCTCTCCAATGGCGGATTCCTCCACCACTCTTCTCCTTCCTCTCTTTTCCCCTCTCTTTCCCGCTCCCGAACCCTCCAATTCCCCACAATCAATGCCAAAATCGCCTTCATTTTGCCCTCTAAACTTCCCTCTCGCGCCCCTGACATTCCCCCTCTCTCGCCGCCGCTCCCTCCGCCGCCGTCTCACAGCGGCTCTCGCTCCGAGTTTCAGGAGAAAATGCTCTTCCTCGACTCCATCGGTATCGATTTCCTTTCTGTCATTAAAGACCATCCTCCCGTCGCTACTGCCTCTCTTGCCGACATCAGATCCGCAGTCGATTTCATGACCTCGATGAATTTCACCGCCGTTGAGTTCCGCCGAATCGTTGGTATGTGCCCTGAGATTCTCACCTCTCGCGTTTCAGACATCGTTCCGGTGTTTACGTTCCTCCTTCGTGAGGCTAGAGTCGACGGTTCTGACATCAAACGTGTTATCAATCGACGCCCTAGGTTGCTTGCGTGTAGCGTGAAGAATCGGCTTCGTCCGACTATGTACTTCCTGCAAAGCATCGGTATATCTGAGGTACATAAACACACTTCTTTACTTTCTTGTAGCGTGGAAGAGAAATTGATTCCGAGAATCGAGTTCTTCGAGAACCTAGGGTTTTCTCGCCGGGACGCTGTGATAATGTTCCGGCGATTCCCGCAGCTGTTCTGCTGCAGCATCAAGGAGAATTTGGAGCCGAAACTGAATTACTTCGTGGTGGAAATGGGAAGAGAATTGAAGGAATTGAAGGAGTTCCCTCATTACTTCTCGTTTAGCTTAGAGAATAGGATTAAGCCGAGACATCAAATCTGTGTGGAGAAGGGCGTTTGTTTTCCATTGCCAGTGTTGCTGAAAACCAGTGAGATGAAATTCCGGGAAAAATTGGAGCTTCTCAACTTTCATGCCATTTCCATCTTCCTTCTCCAAATCCACTGTGTTTCATTTCTCTTGTCCCTTGGATTCTCCATGCGTGGCGGCGGTTCTCGAGCTCCGAACAGGTCGGAGCCACTGCCGCACTCCCAACCTGCTCAGATCCTCCCGCCTCTCAAGCGGCAGCTTGCTTTCGAGTTGTCTAGGCCGTCGTTCGTTCCTTCGGGTGACTATTACCACTTTGGCGGTGGTTCTTCCAATGCTCTTGATCAACAACCTGATGCTATCGTCGTTAAACCTCTCAAACCAAAACAGAAGGGGGCCATGTATAACCATGTGATTGAATCTAGTGACTGCATTCATGATCAGAGTTCTTCAAAAGATGCTCTAAGTTTTGTACAGACACCTGTATCTGCAAAAGGCGGAAGGGTGTACAATAAGGCAAAGACTCCAAGAAGAGCTACGTCTGGGCCTGGAACACCTATCTCAGACACTAGCACTTATTCTCCTCTTACCCCAGCTGGAAACTGTCGACATGACAGTTCTTTAGGTCTTCTGACAAAAAAATTCATCAATTTAATTAAGCAAGCAAGGGATGGCATTCTTGACTTGAACAAAGCTGCAGAAACTTTGAAGGTGCAGAAAAGGAGAATATATGACATTACAAATGTTTTGGAAGGCATAGGTCTCATAGAAAAGAAGCTGAAAAACATAATATGTTGGAAGGGATTCAATGCCCAAAGTCCAGGAAATGTGGATAGTGATACTGCTATGTTGCAGGTGGATGTTGAAAAGCTTTCTTTTGAAGAGCGTAGATTAGAAGATAAGATAAGTGCATTGCAGGAAAGACTTAGGAATCTGAGTGAAGATGAAAATATCCAAAAATGGCTCTTTGTGACTGAAGAAGACATTAAAAGCTTGCCTTGCTTTCAGAATGAAACGCTGATAGCAATTAAAGCTCCTCATGGAACCACATTGGAAGTTCCTGATCCCGATGAAGCTGTTGATGATCCACAGAGAAGATATAGAATAGTTCTTAGGAGCACGATGGGTCCTATTGATGTATATCTTGTCAGTCAATTTGAGGAGAAAATTGAGGAGATGAATGTGGTCCAGACACCTAGTAGCTTCCTACATGCTTCCAGTTCAGGATCAAACGAACATCTAGCAACAGAAGCAATTATTGGTGAGAGCAGTAGAAACGAAATCGAACCCCAAGCTCAACTGTCCCAGTACAGCAGCATCTGTGATGTGCATGGTTCAAACGAGTTTCCTGGTGGAATGATGAAGATTATGCCTTCAGAAATTGATAATGATGCAGATTACTGGCTGTTATCAGATGCTGAAGTTAGCATTACAGATATGTGGAGAACAGATACTATAGCAGCAGATATTGTATGGGACCAGTCAGATATGGTTCCTCATGACTTCATAATATCTGATGTTAGTGCCCAAAGGCCAAGACCAGTAAGCCCACATTCAGAGAGGGGCGGAATGCCATCTGATGTTAACTTAAGACAAAGGTGA 2454 45.84 MNAMQDTALHLLSNGGFLHHSSPSSLFPSLSRSRTLQFPTINAKIAFILPSKLPSRAPDIPPLSPPLPPPPSHSGSRSEFQEKMLFLDSIGIDFLSVIKDHPPVATASLADIRSAVDFMTSMNFTAVEFRRIVGMCPEILTSRVSDIVPVFTFLLREARVDGSDIKRVINRRPRLLACSVKNRLRPTMYFLQSIGISEVHKHTSLLSCSVEEKLIPRIEFFENLGFSRRDAVIMFRRFPQLFCCSIKENLEPKLNYFVVEMGRELKELKEFPHYFSFSLENRIKPRHQICVEKGVCFPLPVLLKTSEMKFREKLELLNFHAISIFLLQIHCVSFLLSLGFSMRGGGSRAPNRSEPLPHSQPAQILPPLKRQLAFELSRPSFVPSGDYYHFGGGSSNALDQQPDAIVVKPLKPKQKGAMYNHVIESSDCIHDQSSSKDALSFVQTPVSAKGGRVYNKAKTPRRATSGPGTPISDTSTYSPLTPAGNCRHDSSLGLLTKKFINLIKQARDGILDLNKAAETLKVQKRRIYDITNVLEGIGLIEKKLKNIICWKGFNAQSPGNVDSDTAMLQVDVEKLSFEERRLEDKISALQERLRNLSEDENIQKWLFVTEEDIKSLPCFQNETLIAIKAPHGTTLEVPDPDEAVDDPQRRYRIVLRSTMGPIDVYLVSQFEEKIEEMNVVQTPSSFLHASSSGSNEHLATEAIIGESSRNEIEPQAQLSQYSSICDVHGSNEFPGGMMKIMPSEIDNDADYWLLSDAEVSITDMWRTDTIAADIVWDQSDMVPHDFIISDVSAQRPRPVSPHSERGGMPSDVNLRQR 817
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4049258 4058625 + CmoCh07G008580.1 Cmo07g00858 386166

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g00858 817 PANTHER TRANSCRIPTION FACTOR E2FB 365 798 - -
Cmo07g00858 817 SUPERFAMILY E2F-DP heterodimerization region 566 669 IPR037241 -
Cmo07g00858 817 MobiDBLite consensus disorder prediction 58 73 - -
Cmo07g00858 817 MobiDBLite consensus disorder prediction 58 78 - -
Cmo07g00858 817 MobiDBLite consensus disorder prediction 452 482 - -
Cmo07g00858 817 Pfam E2F transcription factor CC-MB domain 568 668 IPR032198 GO:0046983
Cmo07g00858 817 SMART mt_12 130 161 IPR003690 GO:0003690|GO:0006355
Cmo07g00858 817 SMART mt_12 232 264 IPR003690 GO:0003690|GO:0006355
Cmo07g00858 817 SMART mt_12 265 296 IPR003690 GO:0003690|GO:0006355
Cmo07g00858 817 SMART mt_12 166 197 IPR003690 GO:0003690|GO:0006355
Cmo07g00858 817 SMART mt_12 95 125 IPR003690 GO:0003690|GO:0006355
Cmo07g00858 817 SMART mt_12 198 227 IPR003690 GO:0003690|GO:0006355
Cmo07g00858 817 Coils Coil 572 599 - -
Cmo07g00858 817 Gene3D Transcription termination factor 3, mitochondrial 149 326 IPR038538 -
Cmo07g00858 817 SMART E2F_TDP_2 487 552 IPR003316 GO:0005667|GO:0006355
Cmo07g00858 817 CDD E2F_DD 568 669 IPR032198 GO:0046983
Cmo07g00858 817 SUPERFAMILY Winged helix DNA-binding domain 487 550 IPR036390 -
Cmo07g00858 817 Pfam E2F/DP family winged-helix DNA-binding domain 489 552 IPR003316 GO:0005667|GO:0006355
Cmo07g00858 817 Gene3D - 559 669 - -
Cmo07g00858 817 MobiDBLite consensus disorder prediction 465 482 - -
Cmo07g00858 817 MobiDBLite consensus disorder prediction 792 817 - -
Cmo07g00858 817 Pfam mTERF 155 310 IPR003690 GO:0003690|GO:0006355
Cmo07g00858 817 Gene3D - 481 555 IPR036388 -
Cmo07g00858 817 PANTHER TRANSCRIPTION FACTOR E2F 365 798 IPR015633 GO:0000978|GO:0006357
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g00858 K06620 E2F3; transcription factor E2F3 - csv:101212480 961.059
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo03g01117 Cmo07g00858 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00304 Cmo-Chr5:1342930 Cmo07g00858 Cmo-Chr7:4049258 2.29E-65 dispersed
Cmo07g00858 Cmo-Chr7:4049258 Cmo20g00168 Cmo-Chr20:850643 9.32E-77 dispersed
Cmo18g00114 Cmo-Chr18:783508 Cmo07g00858 Cmo-Chr7:4049258 3.27E-11 dispersed
Cmo19g00843 Cmo-Chr19:8215102 Cmo07g00858 Cmo-Chr7:4049258 4.94E-22 dispersed
Cmo09g00996 Cmo-Chr9:5292979 Cmo07g00858 Cmo-Chr7:4049258 1.50E-22 transposed
Cmo02g01350 Cmo-Chr2:8036553 Cmo07g00858 Cmo-Chr7:4049258 2.15E-140 wgd
Cmo03g01117 Cmo-Chr3:8970606 Cmo07g00858 Cmo-Chr7:4049258 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g917 . Blo12g00527 . Bda03g00671 . . . . . . . Cma07g00828 Car03g01015 Car07g00815 . Cpe10g00310 . Bhi03g01787 Tan03g1249 . . . . . Cla04g01021 Cam04g1063 Cec04g1183 Cco04g1250 Clacu04g1090 Cmu04g1074 Cre04g1133 Cone3ag0151 Cone10ag0135 . . Lsi01g01191 Csa06g02714 Chy08g00971 . . . . . Bpe04g00633 . . Bma04g00537 . Cmo03g01117 Cmo07g00858 . . . . . Cpe19g00497 . . . . . . . . . . . . . . . . . Cme08g01161
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo18g00114 CCT,CST 18 393 E2F-DP Transcription Factor Family AT3G48160 54.6 2.3e-103 373.2
Cmo04g00407 . 83 286 E2F-DP Transcription Factor Family AT5G02470 55.1 1.5e-59 227.3
Cmo16g00284 . 121 324 E2F-DP Transcription Factor Family AT5G02470 54.6 9.7e-59 224.6
Cmo03g01117 CST 11 460 E2F-DP Transcription Factor Family AT2G36010 52.3 1.6e-111 400.6
Cmo07g00858 CST 353 796 E2F-DP Transcription Factor Family AT2G36010 51.6 8.4e-108 388.3
Cmo02g01350 CST 21 454 E2F-DP Transcription Factor Family AT2G36010 51.0 7.9e-106 381.7
Cmo20g00168 CST 21 261 E2F-DP Transcription Factor Family AT2G36010 56.1 1.7e-63 241.1
Cmo02g01350 CST 24 461 E2F-DP Transcription Factor Family AT5G22220 52.5 7.3e-101 365.2
Cmo03g01117 CST 50 450 E2F-DP Transcription Factor Family AT5G22220 50.1 1.4e-88 324.3
Cmo20g00168 CST 10 261 E2F-DP Transcription Factor Family AT5G22220 60.2 8.8e-62 235.3
Cmo12g00363 CST 153 409 E2F-DP Transcription Factor Family AT1G47870 52.9 3.8e-66 249.6
Cmo05g00304 CST 155 415 E2F-DP Transcription Factor Family AT1G47870 52.7 2.7e-64 243.4
Cmo04g00407 . 83 286 E2F-DP Transcription Factor Family AT5G02470 55.1 1.5e-59 227.3
Cmo16g00284 . 121 324 E2F-DP Transcription Factor Family AT5G02470 54.6 9.7e-59 224.6
Cmo02g01350 CST 24 461 E2F-DP Transcription Factor Family AT5G22220 52.5 7.3e-101 365.2
Cmo03g01117 CST 50 450 E2F-DP Transcription Factor Family AT5G22220 50.1 1.4e-88 324.3
Cmo20g00168 CST 10 261 E2F-DP Transcription Factor Family AT5G22220 60.2 8.8e-62 235.3
Cmo03g01117 CST 11 460 E2F-DP Transcription Factor Family AT2G36010 52.3 1.6e-111 400.6
Cmo07g00858 CST 353 796 E2F-DP Transcription Factor Family AT2G36010 51.6 8.4e-108 388.3
Cmo02g01350 CST 21 454 E2F-DP Transcription Factor Family AT2G36010 51.0 7.9e-106 381.7
Cmo20g00168 CST 21 261 E2F-DP Transcription Factor Family AT2G36010 56.1 1.7e-63 241.1
Cmo12g00363 CST 153 409 E2F-DP Transcription Factor Family AT1G47870 52.9 3.8e-66 249.6
Cmo05g00304 CST 155 415 E2F-DP Transcription Factor Family AT1G47870 52.7 2.7e-64 243.4
Cmo18g00114 CCT,CST 18 393 E2F-DP Transcription Factor Family AT3G48160 54.6 2.3e-103 373.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005036 1 2 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 3 0 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10154 PF02536 mTERF 4.50E-33 No_clan Cmo TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo07g00858 Cmo_Chr07 FPKM 160.034485 173.686142 146.907272 140.767487 117.868843 115.588875 113.117157 276.535858 302.576965 273.884277