Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g00890 ATGGCGGAAGAACACAGATGCCAAGCACCTGAAGGTCACCGTCTCTGTGCTAATAATTGTGGCTTCTTTGGCAGTCCAGCCACCATGGATCTCTGCTCCAAATGTTACAGAGACTTTCGCCTCAAAGAACAAGAACAAGCCTCTACCAAATCCACCATCGAAGCCGCTCTCTCAGCCTCATCTTCTTCTTCTTCTCCTTCCTCTTTACTGATCGATCCTCCTCCCGTTTCCCCTGTTGTAGCCTTGCCTTCGCCGGACACAGATCTGACCATCCCGCCCCTTGCAGCGGCTGGATCTGAGGCGGTCATCCAGTCGTGCCCAAACCCGAACCCGAATCGGTGTTCGTCGTGCCGTAAGAAAGTCGGTTTGACCGGGTTCAGATGCAGATGCGGAATCACGTTCTGTGGAGCTCATAGGTACCCGGAGAAACACGGCTGCACCTTCGATTTCAAGTCAATCGGAAGAGAGGAGATCGCTCGTGCGAACCCCGTCGTGAAAGCCGACAAACTGGAGAGAATTTGA 522 53.26 MAEEHRCQAPEGHRLCANNCGFFGSPATMDLCSKCYRDFRLKEQEQASTKSTIEAALSASSSSSSPSSLLIDPPPVSPVVALPSPDTDLTIPPLAAAGSEAVIQSCPNPNPNRCSSCRKKVGLTGFRCRCGITFCGAHRYPEKHGCTFDFKSIGREEIARANPVVKADKLERI 173
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4210165 4210686 - CmoCh07G008900.1 Cmo07g00890 386198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g00890 173 SMART A20_3 13 37 IPR002653 GO:0003677|GO:0008270
Cmo07g00890 173 SMART AN1_Zf_4 114 151 IPR000058 GO:0008270
Cmo07g00890 173 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 15 59 - -
Cmo07g00890 173 PANTHER ZINC FINGER A20 AND AN1 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 6 1 173 - -
Cmo07g00890 173 Gene3D - 1 68 - -
Cmo07g00890 173 ProSiteProfiles Zinc finger A20-type profile. 10 44 IPR002653 GO:0003677|GO:0008270
Cmo07g00890 173 PANTHER AN1-TYPE ZINC FINGER PROTEIN 1 173 - -
Cmo07g00890 173 Pfam A20-like zinc finger 14 37 IPR002653 GO:0003677|GO:0008270
Cmo07g00890 173 Gene3D - 95 169 IPR035896 -
Cmo07g00890 173 ProSiteProfiles Zinc finger AN1-type profile. 108 154 IPR000058 GO:0008270
Cmo07g00890 173 SUPERFAMILY AN1-like Zinc finger 107 168 IPR035896 -
Cmo07g00890 173 Pfam AN1-like Zinc finger 114 150 IPR000058 GO:0008270
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01365 Cmo-Chr2:8107913 Cmo07g00890 Cmo-Chr7:4210165 2.21E-57 dispersed
Cmo02g01556 Cmo-Chr2:9021910 Cmo07g00890 Cmo-Chr7:4210165 6.86E-46 dispersed
Cmo07g00890 Cmo-Chr7:4210165 Cmo20g00181 Cmo-Chr20:902855 5.70E-62 dispersed
Cmo03g01153 Cmo-Chr3:9136836 Cmo07g00890 Cmo-Chr7:4210165 2.42E-56 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g00890 - - bhj:120073734 280.796