Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g00893 ATGGAAGGAGCTTCAATGGATTCGCCGCCAGATTATGTGGAGGGCGTGGTGTCGGTGTTCCCGAGCAGAAAGCACCGAGTCGTGACCACCAGATCGTGGAACTTTCTGGGTCTCAATCGCCGCTCCAAACGGAACCTTAAAATCGAATCTAATATCATCGTTGCCGTTTTGGATACTGGGATTTGGATAAATAGCCCTAGTTTCAGCGATGAAGGCTACGGTCCGCCTCCCGCTAAATGGAAGGGCCGATGCGTCACCGGACCTAATTTCACCGCCTGCAACAACAAAGTGATCGGTGCTAATTACTTCGATCTGGACAATGTAAGCCAATTTACAGAGCCGAGTGTCGCCGACACGGAGGGGCATGGCTCTCACACAGCGTCGACTGTGGCAGGCTCGGCGGTGGAGGGGGCGAGTTTGTATGGCCTGGGCAAAGGGACTGCACGCGGTGGTGTGCCTTCTGCTCGAATTGCAGTGTACAAAGTGTGCTGGAGTATTTTCTGTAGCGATATGGATGTTCTTGCAGGCTTCGATGAGGCCATTGCTGATGGCGTTGATTTCATTTCCGTCTCCATTGGCTCGGTGGCTGTGGATTTCTTCAGGGACAGCCACGCAATTGGGGCTTTTCATGCTATGAAGAAGGGTATTTTAACGTCCTGCGCCGCTGGAAACGATGGCCCTGAATTGTCCACCGTTGAGAATGTGGCTCCCTGGATTATGACCGTAGCTGCAACCGGCATTGATAGGCGATTTGTCACTGCTTTCAAACTCGGGAATGACAAGAAATTTACTGGATTCTCCATCAACACTTTCTCGCCCAGGAATCAAAATGCTAGTGCTTGTGACGTAGATGCTCTCAGCCAAAGCAAGGTGAAAGGAAGAATCGTGTATTGCTTGACAACATTCACAGATTACAACATCGAATCCTTAGGAGGCACTGGAATCATTGAACTCCTTGAAGAACAAACCGATTCTTCCCCCATTTTGCTTCTCCCTGGAGCTGTCATTCCTCCAGTCTCTGGCAAATATATCGATCTCTATATCAACTCCACCAAGGATCCTAGAGCTATCATTTACAAGAGCAAGACCGTCAAAATTGCTGCTCCTTTCGTGGCCTCTTTCTCATCCAGAGGCCCTCAGCTCATCAGCCCAAATATCCTCAAGCCTGATCTTGCTGCACCAGGGATAGATATCTTGGCTGCTTATACCAAGTTGTCAAGTTTGACAGGGAAAATTGCAGACAGTAGATATAGCTTGTTCAGTGTAATGGCAGGTACGTCCATGGCTTGTCCTCACGCCACTGCGGCTGCTGCCTACGTTAAGTCGTTCCACCCCGACTGGTCTCCGGCTGCGGTCAAGTCGGCTCTCATGACCACCGCAACGCCAATGAAGATCAAGTCTGAGGATGCTGAGTTTGGCTCTGGAGCTGGACAAATAAACCCAACCAAGGCAGTTCATCCCGGCCTTGTTTACGACATTTCGCTCAACTCGTACATATCTTTCCTCTGCAAAGAAGGCTACAACAGTACAACAATTGGCCTACTTGTTGGTAGCAAGGAGTATAACTGCTCCAAGATCAAGCCTGCTCAAGGCACTGACGGGCTCAACTACCCTACAATGCACAAACAGCTCTCAGATCCTGGTTCTGCCATTACAGCGGTGTTTTATCGGACCGTGACTCATGTCGAGCACGGTGCGTCGGTGTACAGGGCGAATATATCATCCCCAGTTGGTCTGTCTGTCAAAGTTTTTCCAGACAGTCTAGATTTTGCCAAGGCAGGAGAAAGGAAGACATTCAAAGTTGTGGTGAAGGGCGAAGCTATGAGAGATGGAACTCGGATTCTATCAGCTTTACTTGAATGGAAGGGCTCTAAACACGTAGTTAGAAGCAATATACTGATCTATAGGCAGTTATTAATGTCAGGATCAACAGGATTGGTTGGTTGGCTGAAGCTGACGGATCCGCTTGAAAGAAGAATGCAACGAATTGAATGA 1995 49.07 MEGASMDSPPDYVEGVVSVFPSRKHRVVTTRSWNFLGLNRRSKRNLKIESNIIVAVLDTGIWINSPSFSDEGYGPPPAKWKGRCVTGPNFTACNNKVIGANYFDLDNVSQFTEPSVADTEGHGSHTASTVAGSAVEGASLYGLGKGTARGGVPSARIAVYKVCWSIFCSDMDVLAGFDEAIADGVDFISVSIGSVAVDFFRDSHAIGAFHAMKKGILTSCAAGNDGPELSTVENVAPWIMTVAATGIDRRFVTAFKLGNDKKFTGFSINTFSPRNQNASACDVDALSQSKVKGRIVYCLTTFTDYNIESLGGTGIIELLEEQTDSSPILLLPGAVIPPVSGKYIDLYINSTKDPRAIIYKSKTVKIAAPFVASFSSRGPQLISPNILKPDLAAPGIDILAAYTKLSSLTGKIADSRYSLFSVMAGTSMACPHATAAAAYVKSFHPDWSPAAVKSALMTTATPMKIKSEDAEFGSGAGQINPTKAVHPGLVYDISLNSYISFLCKEGYNSTTIGLLVGSKEYNCSKIKPAQGTDGLNYPTMHKQLSDPGSAITAVFYRTVTHVEHGASVYRANISSPVGLSVKVFPDSLDFAKAGERKTFKVVVKGEAMRDGTRILSALLEWKGSKHVVRSNILIYRQLLMSGSTGLVGWLKLTDPLERRMQRIE 664
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4228554 4233110 + CmoCh07G008930.1 Cmo07g00893 386201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g00893 664 ProSiteProfiles Serine proteases, subtilase domain profile. 32 485 - -
Cmo07g00893 664 CDD PA_subtilisin_like 255 358 - -
Cmo07g00893 664 Gene3D - 502 637 - -
Cmo07g00893 664 Gene3D - 248 364 - -
Cmo07g00893 664 PANTHER CUCUMISIN PROTEIN 13 638 - -
Cmo07g00893 664 Pfam Fibronectin type-III domain 535 634 IPR041469 -
Cmo07g00893 664 ProSitePatterns Serine proteases, subtilase family, aspartic acid active site. 54 64 IPR023827 -
Cmo07g00893 664 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 13 638 IPR045051 -
Cmo07g00893 664 Pfam Subtilase family 50 475 IPR000209 GO:0006508|GO:0008236
Cmo07g00893 664 Gene3D Peptidase S8/S53 domain 51 498 IPR036852 GO:0004252|GO:0006508
Cmo07g00893 664 CDD Peptidases_S8_3 29 461 IPR034197 -
Cmo07g00893 664 ProSitePatterns Serine proteases, subtilase family, serine active site. 425 435 IPR023828 -
Cmo07g00893 664 PRINTS Subtilisin serine protease family (S8) signature 118 131 IPR015500 -
Cmo07g00893 664 PRINTS Subtilisin serine protease family (S8) signature 49 68 IPR015500 -
Cmo07g00893 664 PRINTS Subtilisin serine protease family (S8) signature 424 440 IPR015500 -
Cmo07g00893 664 SUPERFAMILY Subtilisin-like 46 485 IPR036852 GO:0004252|GO:0006508
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo06g00463 Cmo07g00893 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g00893 Cmo-Chr7:4228554 Cmo04g01223 Cmo-Chr4:6205237 0 dispersed
Cmo06g00463 Cmo-Chr6:2236164 Cmo07g00893 Cmo-Chr7:4228554 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g00893 - - csv:101207592 1012.68