Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g00896 ATGGGATCTAATACATGTGAAATTGTTGAAGCAAGGGAAGAAATTAAGGCTGTTCAAAGTAAGGTAGAATCTCGTCATTCGGATTTTGTATCTCACCGAGATCGGAAACCTTCTGCATTGAAAATTGGATTCAAGGGATTTCTAGAGGATGATATCAATCAGCTTTTTGAGTCGATTAGTATTAAAAATGCATCCAAGAGCTTAGGTCATTCACAAGTAGATGTAAATGCGCTGAGAAAAAGTACGCTAAAGAAGCCAATAAGTGTTGGCATGCCTCGCTCGCCAGGTATTGGTACTTCTGATTCTGGTAGTTTGAAGCAGGCACTCAGGGAACTGTGCCTTTCAAAGGCGTCTGAGATGGCTGCTATGAAAAGATCATCAAAACCAGCTACCTTGTCAAGACTCTCGGAAGCTGGTCGGATCAAGACATTGTACAATTCCGTTATGGTTGAAGCCACTGAGTCAGGCTCTTCTTCAGATAACGGTAAGGGGGGGCGTGTGGTCGAAATATCCCTGGTTCCAGAGGGCAAAAAACAGAACGTTGAGCAGAGACTTGAGCATGTCCAAGCATCTGCTGTTAAATCACCAGCTGAAAGTTCTCGTTCTTCTCCTCAGTTCACGGTTACGAAAACACAAAGTTCTATTGAGGTTGGTACTGTCGAACAAAACGTCAATACCACTCTGTCAAGGAAAGTTGGACCTCAAACATTAAAGGCAGAGCTGGAGAAGGAAGAGGAGTCCATTACCCCACCATCTATATCTTCTTGTACGATTAAGAAGGTATTAGATAAGGAGAAGAAGATTCTTGTCTCGAGCAGGGTAGGAAATAAAGTGTCATCGTCCAAGGCTGGACGGAAAGGTCGGCTGCAAACTGCTTCTTCATCTAAGTTGGGTAGTGGCAATAAGGTAAGCAAGTTATCTAGAAGTAATTCCCGTTCGATCAAACCAGTTATTCGGAACAAGGGGCTGGTTAAAAAGAAAGTCAAACAGGATTTGAGTTCTCCAACATGTAGTTCAAGCACATACAATGCAGTAAATGGCGACACGGATCCTAGTAAAAAGAAGTTGATATGTGAGAGGTGCCACTGCGCATTGAACAGTGCAGCTAAAGACTCGAAGAAGGGCTCTGCTTCCCAGTTTAGTGCTCTTGGTACTGATGTAAATAATGCTAGTTCAAAATCTGGTGCTAACAAATCAGGCATCACGGATGGCAAGGCTTCTGATGTTCGAGTAAAAAACAATACAAGGGTACGAGATAAGGGTGAGTTCTCTCAAAGCTCAAAAAGTAGTCAAGGCGAGTACAGTAGCAGTACTACGAGTATTATAAGTGATGACTGCAATGGGCATGGATCGAGTAATGGTAACAGACCTCATATGTCGAAAGATGTAAGGTGGGAAGCCATACGTCACGCACAATTGCAGCATGGGGTTCTCAGCTTGAGGCATTTCAATCTCTTAAAGAAGCTTGGTTGTGGGGACATTGGAACGGTGTATCTTGCCGAGCTAAATGGCACTAATTGCCTATTTGCCATTAAGGTCATGGACAACGAGTTTCTAGCAAGACGGAAGAAAATGCCGAGAGCGCAAACCGAGAGAGAAATACTGAGAATGCTAGATCATCCATTCCTCCCAACACTTTATGTTCAATTTACTTCAGATAATCTATCATGTCTTGTCATGGAATATTGTCCCGGTGGAGATCTTCATGTTCTGCGGCAGAAGCAGCTCGGCCGAGTTTTTCCTGAGCCTGCAGCAAGATGCAAAAAGCACCGAACATCGCATGAAAAGTACGTAAAATCTGAGGTGCATGCTACTCATATATACTTAATCTATACTTTGTTAAGCACAAACATGCAGTTTCAAGTTGATTTGATCAAATTGATATCTATACTCTCGATCCCTTCGAATGCCATATTTTATGACAATGTCAATAGCACAATCTTGCTGGTTCGGCTCAAGCAGTCATTTTATGTTGCTGAGGTCCTCCTTGCCTTGGAGTACTTGCACATGCTTGGAGTTATTTATCGAGATTTAAAACCCGAGAACATTCTTGTCAGGGAAGATGGTCACATAATGCTCACCGACTTCGACCTGTCGCTTAGGTGCACGGTCTGTCCAACACTCCTGAAGTCATCATCCTCCGATTCAGACTCGGCGAAGACATCAGGTCCATGTACAGATTCTAGTTGTGCTGAGCCTTTTTGCATTGAACCATCATGCCAAGTCCCATGCTTCAGCCCAAGGTTCTTACCAGCTGCTTCCAAAACAAGGAAGTCAAAACCCGACCTCACAACTCAGTTCAGGTCATTGCCCCAGCTCGTTGCTGAACCCACCGATGCACGATCAAATTCCTTCGTTGGCACTCACGAGTATTTGGCACCGGAGATCATCAAAGGAGAGGGTCATGGAGCTGCAGTCGATTGGTGGACGTTTGGTGTTTTTCTCTATGAACTTCTATATGGTAGAACCCCTTTCAAGGGATCCAACAACGAAGAGACATTAGCCAATGTAGTATTGCAGAGCCTCAGTTTCCCCGACAGCCCGATCGTTAGTTTCCAAGCAAGGGATCTAATCCGAGGGCTGTTAGTGAAGGAGCCTGAAAGTCGATTCGGGACGGAAAAAGGAGCGGCCGAAATCAAACAGCACCCGTTCTTCGAGGGGCTAAACTGGGCGTTGATCCGTTGTGCAATTCCTCCAGAAGTCCCGGAGGTATGTGATATGGACATTCCAAGCATGATTTCTCAACAAAACAAGTTCAGGTATTTGGAAAGCAAGTCGACTGGAGAGCACTTGGAGTTCGAATTGTTCTAG 2811 44.47 MGSNTCEIVEAREEIKAVQSKVESRHSDFVSHRDRKPSALKIGFKGFLEDDINQLFESISIKNASKSLGHSQVDVNALRKSTLKKPISVGMPRSPGIGTSDSGSLKQALRELCLSKASEMAAMKRSSKPATLSRLSEAGRIKTLYNSVMVEATESGSSSDNGKGGRVVEISLVPEGKKQNVEQRLEHVQASAVKSPAESSRSSPQFTVTKTQSSIEVGTVEQNVNTTLSRKVGPQTLKAELEKEEESITPPSISSCTIKKVLDKEKKILVSSRVGNKVSSSKAGRKGRLQTASSSKLGSGNKVSKLSRSNSRSIKPVIRNKGLVKKKVKQDLSSPTCSSSTYNAVNGDTDPSKKKLICERCHCALNSAAKDSKKGSASQFSALGTDVNNASSKSGANKSGITDGKASDVRVKNNTRVRDKGEFSQSSKSSQGEYSSSTTSIISDDCNGHGSSNGNRPHMSKDVRWEAIRHAQLQHGVLSLRHFNLLKKLGCGDIGTVYLAELNGTNCLFAIKVMDNEFLARRKKMPRAQTEREILRMLDHPFLPTLYVQFTSDNLSCLVMEYCPGGDLHVLRQKQLGRVFPEPAARCKKHRTSHEKYVKSEVHATHIYLIYTLLSTNMQFQVDLIKLISILSIPSNAIFYDNVNSTILLVRLKQSFYVAEVLLALEYLHMLGVIYRDLKPENILVREDGHIMLTDFDLSLRCTVCPTLLKSSSSDSDSAKTSGPCTDSSCAEPFCIEPSCQVPCFSPRFLPAASKTRKSKPDLTTQFRSLPQLVAEPTDARSNSFVGTHEYLAPEIIKGEGHGAAVDWWTFGVFLYELLYGRTPFKGSNNEETLANVVLQSLSFPDSPIVSFQARDLIRGLLVKEPESRFGTEKGAAEIKQHPFFEGLNWALIRCAIPPEVPEVCDMDIPSMISQQNKFRYLESKSTGEHLEFELF 936
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4259422 4263644 + CmoCh07G008960.1 Cmo07g00896 386204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g00896 936 Gene3D Transferase(Phosphotransferase) domain 1 655 700 - -
Cmo07g00896 936 MobiDBLite consensus disorder prediction 385 401 - -
Cmo07g00896 936 ProSiteProfiles Protein kinase domain profile. 483 885 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo07g00896 936 PANTHER FLIPPASE KINASE 1-RELATED 655 936 - -
Cmo07g00896 936 PANTHER FLIPPASE KINASE 1-RELATED 3 586 - -
Cmo07g00896 936 Pfam Protein tyrosine and serine/threonine kinase 484 701 IPR001245 GO:0004672|GO:0006468
Cmo07g00896 936 SMART serkin_6 483 885 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo07g00896 936 MobiDBLite consensus disorder prediction 331 345 - -
Cmo07g00896 936 ProSitePatterns Serine/Threonine protein kinases active-site signature. 673 685 IPR008271 GO:0004672|GO:0006468
Cmo07g00896 936 MobiDBLite consensus disorder prediction 273 345 - -
Cmo07g00896 936 MobiDBLite consensus disorder prediction 385 439 - -
Cmo07g00896 936 Gene3D Phosphorylase Kinase; domain 1 477 609 - -
Cmo07g00896 936 MobiDBLite consensus disorder prediction 193 210 - -
Cmo07g00896 936 SUPERFAMILY Protein kinase-like (PK-like) 458 904 IPR011009 -
Cmo07g00896 936 MobiDBLite consensus disorder prediction 273 316 - -
Cmo07g00896 936 Gene3D Transferase(Phosphotransferase) domain 1 778 903 - -
Cmo07g00896 936 MobiDBLite consensus disorder prediction 424 439 - -
Cmo07g00896 936 Pfam Protein kinase domain 782 885 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo07g00896 936 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 655 936 - -
Cmo07g00896 936 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 3 586 - -
Cmo07g00896 936 MobiDBLite consensus disorder prediction 409 423 - -
Cmo07g00896 936 MobiDBLite consensus disorder prediction 190 210 - -
Cmo07g00896 936 CDD STKc_phototropin_like 481 906 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g00896 Cmo-Chr7:4259422 Cmo20g00200 Cmo-Chr20:979509 0 dispersed
Cmo13g00533 Cmo-Chr13:6233697 Cmo07g00896 Cmo-Chr7:4259422 8.41E-118 dispersed
Cmo18g00473 Cmo-Chr18:3196968 Cmo07g00896 Cmo-Chr7:4259422 3.10E-116 dispersed
Cmo02g01378 Cmo-Chr2:8182901 Cmo07g00896 Cmo-Chr7:4259422 0 wgd
Cmo03g01161 Cmo-Chr3:9165435 Cmo07g00896 Cmo-Chr7:4259422 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74478 PF07714 PK_Tyr_Ser-Thr 2.60E-17 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g00896 - K08286 qlo:115952794 1034.25